Wall clock time and date at job start Mon Mar 30 2020 01:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45199 * 109.47110 * 2 1 4 4 C 1.34228 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00009 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.46896 * 109.47001 * 174.67510 * 6 4 3 8 8 C 1.46900 * 110.99895 * 166.08780 * 7 6 4 9 9 C 1.50700 * 109.47051 * 201.63070 * 8 7 6 10 10 H 1.07993 * 120.00279 * 4.25716 * 9 8 7 11 11 C 1.37878 * 119.99880 * 184.26854 * 9 8 7 12 12 N 1.31512 * 120.00073 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00129 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47083 * 89.99039 * 13 11 9 15 15 H 1.48493 * 109.47254 * 209.99459 * 13 11 9 16 16 H 1.48505 * 109.46542 * 329.99702 * 13 11 9 17 17 C 1.46899 * 111.00014 * 290.03727 * 7 6 4 18 18 H 1.09001 * 109.53423 * 51.15234 * 17 7 6 19 19 C 1.53112 * 109.50409 * 171.25420 * 17 7 6 20 20 C 1.53116 * 109.21247 * 177.62931 * 19 17 7 21 21 C 1.53039 * 109.28100 * 302.31295 * 20 19 17 22 22 N 1.46846 * 109.52130 * 59.17586 * 21 20 19 23 23 C 1.46841 * 111.20251 * 298.26215 * 22 21 20 24 24 H 1.08994 * 109.46960 * 299.99729 * 1 2 3 25 25 H 1.09004 * 109.46530 * 59.99939 * 1 2 3 26 26 H 1.09000 * 109.47026 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46836 * 240.00238 * 2 1 3 28 28 H 1.08992 * 109.46864 * 120.00304 * 2 1 3 29 29 H 1.08996 * 109.47418 * 54.66793 * 6 4 3 30 30 H 1.09009 * 109.46897 * 294.67064 * 6 4 3 31 31 H 1.09007 * 109.47246 * 321.62933 * 8 7 6 32 32 H 1.08998 * 109.47406 * 81.62592 * 8 7 6 33 33 H 0.97006 * 119.99993 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.52460 * 57.69407 * 19 17 7 35 35 H 1.09000 * 109.52174 * 297.56303 * 19 17 7 36 36 H 1.09000 * 109.50875 * 62.25386 * 20 19 17 37 37 H 1.09000 * 109.50448 * 182.37153 * 20 19 17 38 38 H 1.08995 * 109.46309 * 179.19566 * 21 20 19 39 39 H 1.09001 * 109.46199 * 299.16647 * 21 20 19 40 40 H 1.00895 * 111.00068 * 174.16074 * 22 21 20 41 41 H 1.09003 * 109.46523 * 181.75561 * 23 22 21 42 42 H 1.09000 * 109.46305 * 301.73761 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3822 2.8627 0.1302 8 6 6.0058 4.1530 -0.1926 9 6 7.4482 3.9334 -0.5697 10 1 7.8423 2.9302 -0.6363 11 6 8.2650 5.0135 -0.8293 12 7 7.7851 6.2353 -0.7484 13 14 10.0532 4.7414 -1.2959 14 1 10.1663 4.6170 -2.7714 15 1 10.8666 5.8941 -0.8326 16 1 10.5481 3.4967 -0.6548 17 6 5.7697 2.4123 1.4736 18 1 5.2277 1.4999 1.7226 19 6 7.2756 2.1373 1.5060 20 6 7.6822 1.7255 2.9236 21 6 7.2912 2.8341 3.9036 22 7 5.8417 3.0593 3.8368 23 6 5.4341 3.5014 2.4972 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.5103 3.5001 0.8395 30 1 3.6636 3.4374 -0.9327 31 1 5.4778 4.6129 -1.0281 32 1 5.9531 4.8095 0.6759 33 1 8.3597 6.9951 -0.9314 34 1 7.8168 3.0390 1.2194 35 1 7.5140 1.3327 0.8105 36 1 7.1704 0.8024 3.1954 37 1 8.7603 1.5694 2.9621 38 1 7.5665 2.5377 4.9158 39 1 7.8141 3.7533 3.6396 40 1 5.5453 3.7185 4.5408 41 1 4.3605 3.6897 2.4878 42 1 5.9658 4.4174 2.2396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246908918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:16 Heat of formation + Delta-G solvation = -73.848549 kcal Electronic energy + Delta-G solvation = -22196.152807 eV Core-core repulsion = 18983.509424 eV Total energy + Delta-G solvation = -3212.643383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20077 -38.71148 -36.36752 -35.22551 -32.65181 -31.75655 -31.28905 -29.28264 -28.17255 -25.53637 -23.31696 -23.07646 -22.65639 -21.17834 -20.07881 -18.52273 -17.34650 -16.74145 -16.39612 -16.04978 -15.62867 -14.81989 -14.58494 -14.28702 -13.99811 -13.60280 -13.37866 -13.16268 -12.84869 -12.70135 -12.30934 -12.23020 -12.17057 -11.82626 -11.56384 -11.44794 -11.20494 -10.92103 -10.64651 -10.63347 -10.40906 -10.34178 -10.09342 -9.87714 -9.78045 -9.34638 -9.09780 -8.42104 -8.11579 -7.25961 -6.07186 -4.03680 2.65881 2.89080 3.30197 3.36863 3.41029 4.37863 4.53090 4.90895 4.91228 4.94802 5.09806 5.26159 5.26442 5.45221 5.53181 5.60301 5.63522 5.70023 5.72465 5.74266 5.83502 5.90046 5.95001 6.13392 6.22223 6.42883 6.45189 6.52837 6.66588 6.74432 7.00452 7.07868 7.28376 7.37919 7.51719 7.71649 7.77849 8.02289 8.08948 8.24088 8.45886 9.00924 9.55604 11.02832 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.005961 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.964336 B = 4695.851418 C = 5555.966525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.459 3.541 5 O -0.486 6.486 6 C 0.061 3.939 7 N -0.515 5.515 8 C 0.184 3.816 9 C -0.497 4.497 10 H 0.073 0.927 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.105 3.895 18 H 0.072 0.928 19 C -0.124 4.124 20 C -0.117 4.117 21 C 0.059 3.941 22 N -0.687 5.687 23 C 0.018 3.982 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.026 0.974 32 H 0.012 0.988 33 H 0.261 0.739 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.333 0.667 41 H 0.058 0.942 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -7.087 5.834 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.301 3.699 5 O -0.371 6.371 6 C -0.069 4.069 7 N -0.240 5.240 8 C 0.060 3.940 9 C -0.536 4.536 10 H 0.091 0.909 11 C -0.147 4.147 12 N -0.539 5.539 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.196 1.196 17 C -0.004 4.004 18 H 0.090 0.910 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.318 5.318 23 C -0.113 4.113 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.351 -8.234 5.324 13.549 hybrid contribution 0.920 1.345 0.271 1.652 sum -8.431 -6.889 5.595 12.241 Atomic orbital electron populations 1.21790 0.93042 1.02593 1.03367 1.22908 0.94961 0.80995 1.02368 1.86504 1.25527 1.31748 1.84816 1.24049 0.79833 0.93467 0.72590 1.90636 1.60022 1.42831 1.43635 1.21644 0.92081 0.89157 1.03980 1.62109 1.02331 1.33766 1.25767 1.19975 0.94924 0.83086 0.95994 1.21240 0.94090 0.93374 1.44866 0.90892 1.24968 0.98773 0.95091 0.95864 1.69949 1.36155 0.97912 1.49838 0.86558 0.84682 0.77730 0.78917 1.20632 1.21424 1.19628 1.21516 0.97481 0.95871 0.85527 0.91012 1.22107 0.95386 1.04570 0.94088 1.21614 0.99836 0.97826 0.96233 1.21902 0.87867 0.98298 0.98957 1.60282 1.14519 1.51475 1.05515 1.22783 0.99328 0.99600 0.89589 0.91618 0.91582 0.90588 0.91487 0.91550 0.91645 0.87096 0.95576 0.97008 0.92954 0.86960 0.92100 0.92458 0.92141 0.91834 0.94950 0.85063 0.92329 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -5.57 10.22 -39.25 -0.40 -5.97 16 4 C 0.46 8.15 7.49 36.01 0.27 8.42 16 5 O -0.49 -9.98 14.75 -18.75 -0.28 -10.26 16 6 C 0.06 1.09 5.45 -4.98 -0.03 1.06 16 7 N -0.51 -10.98 4.10 -229.34 -0.94 -11.92 16 8 C 0.18 4.48 4.52 -4.98 -0.02 4.45 16 9 C -0.50 -13.16 6.47 -34.44 -0.22 -13.39 16 10 H 0.07 1.96 6.27 -52.49 -0.33 1.63 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.11 2.12 2.05 -67.56 -0.14 1.98 16 18 H 0.07 1.51 6.35 -51.93 -0.33 1.18 16 19 C -0.12 -2.55 4.05 -26.61 -0.11 -2.66 16 20 C -0.12 -2.00 6.09 -26.65 -0.16 -2.17 16 21 C 0.06 0.95 6.55 -3.83 -0.03 0.92 16 22 N -0.69 -11.13 6.85 -113.74 -0.78 -11.91 16 23 C 0.02 0.32 5.21 -3.76 -0.02 0.30 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.07 1.07 6.26 -51.93 -0.33 0.74 16 30 H 0.11 1.86 7.72 -51.92 -0.40 1.46 16 31 H 0.03 0.67 7.64 -51.92 -0.40 0.27 16 32 H 0.01 0.31 5.35 -51.93 -0.28 0.03 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.11 2.62 5.01 -51.93 -0.26 2.36 16 35 H 0.06 1.31 7.95 -51.93 -0.41 0.90 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.33 4.62 8.90 -39.29 -0.35 4.27 16 41 H 0.06 1.00 6.52 -51.93 -0.34 0.67 16 42 H 0.05 1.13 5.94 -51.93 -0.31 0.82 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -29.74 325.35 -8.39 -38.12 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.67 Total: 5.34 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.06 Total: 0.33 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.98 Total: -48.55 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.68 Total: -16.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.74 -8.39 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246908918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.726 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds