Wall clock time and date at job start Mon Mar 30 2020 01:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45199 * 109.47110 * 2 1 4 4 C 1.34228 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00009 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.46896 * 109.47001 * 174.67510 * 6 4 3 8 8 C 1.46900 * 110.99895 * 166.08780 * 7 6 4 9 9 C 1.50700 * 109.47051 * 201.63070 * 8 7 6 10 10 H 1.07993 * 120.00279 * 4.25716 * 9 8 7 11 11 C 1.37878 * 119.99880 * 184.26854 * 9 8 7 12 12 N 1.31512 * 120.00073 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00129 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47083 * 89.99039 * 13 11 9 15 15 H 1.48493 * 109.47254 * 209.99459 * 13 11 9 16 16 H 1.48505 * 109.46542 * 329.99702 * 13 11 9 17 17 C 1.46899 * 111.00014 * 290.03727 * 7 6 4 18 18 H 1.09001 * 109.53423 * 51.15234 * 17 7 6 19 19 C 1.53112 * 109.50409 * 171.25420 * 17 7 6 20 20 C 1.53116 * 109.21247 * 177.62931 * 19 17 7 21 21 C 1.53039 * 109.28100 * 302.31295 * 20 19 17 22 22 N 1.46846 * 109.52130 * 59.17586 * 21 20 19 23 23 C 1.46841 * 111.20251 * 298.26215 * 22 21 20 24 24 H 1.08994 * 109.46960 * 299.99729 * 1 2 3 25 25 H 1.09004 * 109.46530 * 59.99939 * 1 2 3 26 26 H 1.09000 * 109.47026 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46836 * 240.00238 * 2 1 3 28 28 H 1.08992 * 109.46864 * 120.00304 * 2 1 3 29 29 H 1.08996 * 109.47418 * 54.66793 * 6 4 3 30 30 H 1.09009 * 109.46897 * 294.67064 * 6 4 3 31 31 H 1.09007 * 109.47246 * 321.62933 * 8 7 6 32 32 H 1.08998 * 109.47406 * 81.62592 * 8 7 6 33 33 H 0.97006 * 119.99993 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.52460 * 57.69407 * 19 17 7 35 35 H 1.09000 * 109.52174 * 297.56303 * 19 17 7 36 36 H 1.09000 * 109.50875 * 62.25386 * 20 19 17 37 37 H 1.09000 * 109.50448 * 182.37153 * 20 19 17 38 38 H 1.08995 * 109.46309 * 179.19566 * 21 20 19 39 39 H 1.09001 * 109.46199 * 299.16647 * 21 20 19 40 40 H 1.00895 * 111.00068 * 174.16074 * 22 21 20 41 41 H 1.09003 * 109.46523 * 181.75561 * 23 22 21 42 42 H 1.09000 * 109.46305 * 301.73761 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3822 2.8627 0.1302 8 6 6.0058 4.1530 -0.1926 9 6 7.4482 3.9334 -0.5697 10 1 7.8423 2.9302 -0.6363 11 6 8.2650 5.0135 -0.8293 12 7 7.7851 6.2353 -0.7484 13 14 10.0532 4.7414 -1.2959 14 1 10.1663 4.6170 -2.7714 15 1 10.8666 5.8941 -0.8326 16 1 10.5481 3.4967 -0.6548 17 6 5.7697 2.4123 1.4736 18 1 5.2277 1.4999 1.7226 19 6 7.2756 2.1373 1.5060 20 6 7.6822 1.7255 2.9236 21 6 7.2912 2.8341 3.9036 22 7 5.8417 3.0593 3.8368 23 6 5.4341 3.5014 2.4972 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.5103 3.5001 0.8395 30 1 3.6636 3.4374 -0.9327 31 1 5.4778 4.6129 -1.0281 32 1 5.9531 4.8095 0.6759 33 1 8.3597 6.9951 -0.9314 34 1 7.8168 3.0390 1.2194 35 1 7.5140 1.3327 0.8105 36 1 7.1704 0.8024 3.1954 37 1 8.7603 1.5694 2.9621 38 1 7.5665 2.5377 4.9158 39 1 7.8141 3.7533 3.6396 40 1 5.5453 3.7185 4.5408 41 1 4.3605 3.6897 2.4878 42 1 5.9658 4.4174 2.2396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246908918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:16 Heat of formation + Delta-G solvation = -94.535126 kcal Electronic energy + Delta-G solvation = -22197.049844 eV Core-core repulsion = 18983.509424 eV Total energy + Delta-G solvation = -3213.540420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.60994 -40.21641 -37.70590 -36.77868 -34.65890 -32.88998 -32.59326 -30.71419 -30.01655 -27.21211 -24.88888 -24.35631 -24.10451 -22.60609 -21.51284 -20.14581 -18.81085 -18.39214 -17.91802 -17.46519 -17.01179 -16.55273 -16.29799 -15.61310 -15.39871 -15.13374 -14.82945 -14.63762 -14.11920 -14.05298 -13.81327 -13.64130 -13.54857 -13.11835 -12.99168 -12.89894 -12.72339 -12.51168 -12.47039 -12.37233 -11.94201 -11.76122 -11.49474 -11.44969 -11.30684 -11.10931 -10.91259 -10.48594 -9.52326 -8.93077 -8.14883 -6.16644 1.24565 1.41215 1.42793 1.52442 1.63481 2.42960 3.07716 3.17037 3.44792 3.81887 3.97413 4.02598 4.07619 4.13719 4.17493 4.22014 4.30145 4.37082 4.39461 4.51210 4.62892 4.77026 4.85898 4.88301 4.95225 5.01536 5.03101 5.15077 5.17989 5.25105 5.29053 5.47678 5.49506 5.72612 5.76757 5.93342 6.10763 6.34942 6.51606 6.53950 6.87217 6.92671 7.45715 8.94552 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.005961 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.964336 B = 4695.851418 C = 5555.966525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.468 3.532 5 O -0.519 6.519 6 C 0.057 3.943 7 N -0.531 5.531 8 C 0.200 3.800 9 C -0.500 4.500 10 H 0.063 0.937 11 C 0.009 3.991 12 N -0.930 5.930 13 Si 0.951 3.049 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.267 1.267 17 C 0.110 3.890 18 H 0.067 0.933 19 C -0.122 4.122 20 C -0.112 4.112 21 C 0.060 3.940 22 N -0.682 5.682 23 C 0.030 3.970 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.008 0.992 32 H 0.000 1.000 33 H 0.262 0.738 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.017 0.983 40 H 0.350 0.650 41 H 0.072 0.928 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -7.973 6.960 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.311 3.689 5 O -0.407 6.407 6 C -0.072 4.072 7 N -0.256 5.256 8 C 0.075 3.925 9 C -0.539 4.539 10 H 0.081 0.919 11 C -0.189 4.189 12 N -0.571 5.571 13 Si 0.777 3.223 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.191 1.191 17 C 0.001 3.999 18 H 0.085 0.915 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.069 4.069 22 N -0.314 5.314 23 C -0.101 4.101 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.035 0.965 40 H 0.168 0.832 41 H 0.090 0.910 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.130 -9.126 6.465 15.090 hybrid contribution 1.052 1.543 -0.071 1.869 sum -9.078 -7.583 6.394 13.446 Atomic orbital electron populations 1.21813 0.90024 1.04397 1.03754 1.23278 0.97262 0.79299 1.02286 1.86492 1.23702 1.33784 1.84084 1.23842 0.80551 0.92746 0.71769 1.90625 1.60987 1.43687 1.45379 1.21692 0.90144 0.90048 1.05281 1.61951 1.04588 1.32006 1.27020 1.19632 0.94034 0.84144 0.94649 1.21434 0.95336 0.92891 1.44228 0.91858 1.25649 1.02426 0.94857 0.96004 1.70045 1.37454 0.98546 1.51079 0.85653 0.80376 0.77770 0.78541 1.20390 1.20972 1.19112 1.21446 0.96960 0.96047 0.85472 0.91524 1.21969 0.95572 1.02356 0.96066 1.21589 1.00866 0.98468 0.94148 1.21942 0.87471 0.97149 1.00342 1.60272 1.14739 1.51737 1.04649 1.22550 0.99738 0.97456 0.90373 0.91171 0.91231 0.88052 0.91709 0.91635 0.89685 0.86207 0.97396 0.98236 0.92934 0.89944 0.94061 0.91771 0.90742 0.88457 0.96461 0.83165 0.90965 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.99 0.74 -1.39 16 2 C 0.05 1.19 6.19 71.99 0.45 1.64 16 3 O -0.36 -10.52 10.22 -51.39 -0.53 -11.05 16 4 C 0.47 16.34 7.49 71.24 0.53 16.87 16 5 O -0.52 -21.28 14.75 21.97 0.32 -20.96 16 6 C 0.06 2.03 5.45 85.56 0.47 2.49 16 7 N -0.53 -22.98 4.10 -879.49 -3.60 -26.59 16 8 C 0.20 10.01 4.52 85.56 0.39 10.39 16 9 C -0.50 -27.16 6.47 25.60 0.17 -27.00 16 10 H 0.06 3.50 6.27 -2.91 -0.02 3.48 16 11 C 0.01 0.47 5.46 84.66 0.46 0.93 16 12 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 13 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.11 4.42 2.05 45.01 0.09 4.51 16 18 H 0.07 2.79 6.35 -2.39 -0.02 2.77 16 19 C -0.12 -5.08 4.05 30.67 0.12 -4.95 16 20 C -0.11 -3.72 6.09 30.65 0.19 -3.53 16 21 C 0.06 1.81 6.55 86.33 0.57 2.37 16 22 N -0.68 -20.78 6.85 -513.77 -3.52 -24.30 16 23 C 0.03 1.08 5.21 86.37 0.45 1.53 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 28 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.09 2.68 6.26 -2.39 -0.01 2.67 16 30 H 0.12 4.00 7.72 -2.38 -0.02 3.98 16 31 H 0.01 0.42 7.64 -2.38 -0.02 0.40 16 32 H 0.00 0.00 5.35 -2.39 -0.01 -0.01 16 33 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 34 H 0.08 3.95 5.01 -2.39 -0.01 3.94 16 35 H 0.04 1.82 7.95 -2.39 -0.02 1.80 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.35 8.84 8.90 -89.70 -0.80 8.04 16 41 H 0.07 2.38 6.52 -2.39 -0.02 2.37 16 42 H 0.02 1.06 5.94 -2.39 -0.01 1.04 16 Total: -1.00 -64.47 325.35 -0.17 -64.64 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.22 Total: 21.90 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.62 Total: 3.87 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -6.84 Total: -104.20 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.20 Total: -32.00 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.47 -0.17 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246908918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.895 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds