Wall clock time and date at job start Mon Mar 30 2020 01:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46894 * 2 1 4 4 C 1.34229 * 116.99975 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00224 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47052 * 180.34703 * 6 4 3 8 8 C 1.46896 * 111.00197 * 287.14831 * 7 6 4 9 9 C 1.50701 * 109.47066 * 170.00081 * 8 7 6 10 10 H 1.07996 * 119.99742 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99532 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00206 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47243 * 89.99786 * 13 11 9 15 15 H 1.48500 * 109.47013 * 209.99534 * 13 11 9 16 16 H 1.48502 * 109.47442 * 329.99897 * 13 11 9 17 17 C 1.46901 * 110.99874 * 163.19260 * 7 6 4 18 18 H 1.08989 * 110.27497 * 174.68918 * 17 7 6 19 19 C 1.54601 * 110.30800 * 296.88419 * 17 7 6 20 20 C 1.54940 * 102.92037 * 140.87045 * 19 17 7 21 21 N 1.48533 * 103.22770 * 322.58720 * 20 19 17 22 22 C 1.46901 * 110.99952 * 159.71815 * 21 20 19 23 23 C 1.47903 * 105.82314 * 39.20641 * 21 20 19 24 24 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46911 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.46628 * 60.00528 * 1 2 3 27 27 H 1.08997 * 109.46911 * 239.99796 * 2 1 3 28 28 H 1.08997 * 109.46628 * 119.99472 * 2 1 3 29 29 H 1.09001 * 109.47132 * 60.34793 * 6 4 3 30 30 H 1.08999 * 109.47057 * 300.34768 * 6 4 3 31 31 H 1.09001 * 109.46738 * 290.00171 * 8 7 6 32 32 H 1.08997 * 109.46806 * 50.00153 * 8 7 6 33 33 H 0.97003 * 120.00276 * 179.97438 * 12 11 9 34 34 H 1.08996 * 110.72307 * 259.22803 * 19 17 7 35 35 H 1.08997 * 110.72616 * 22.52029 * 19 17 7 36 36 H 1.09000 * 110.67019 * 204.14942 * 20 19 17 37 37 H 1.08999 * 110.66500 * 81.01838 * 20 19 17 38 38 H 1.08997 * 109.47466 * 302.60240 * 22 21 20 39 39 H 1.09006 * 109.47284 * 62.60440 * 22 21 20 40 40 H 1.09006 * 109.47391 * 182.60188 * 22 21 20 41 41 H 1.08999 * 109.91734 * 94.02046 * 23 21 20 42 42 H 1.09000 * 109.91865 * 215.12301 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 7 5.3877 2.8606 -0.0077 8 6 5.8990 2.4270 1.2994 9 6 7.3709 2.1235 1.1875 10 1 7.8760 2.2414 0.2403 11 6 8.0728 1.6964 2.2948 12 7 9.3571 1.4311 2.1970 13 14 7.1991 1.4931 3.9332 14 1 6.6695 0.1102 4.0437 15 1 8.1569 1.7462 5.0396 16 1 6.0765 2.4614 4.0192 17 6 5.9801 4.1448 -0.4050 18 1 7.0656 4.1034 -0.3166 19 6 5.5708 4.4993 -1.8531 20 6 5.3285 6.0279 -1.7802 21 7 4.7036 6.2097 -0.4451 22 6 4.8330 7.5999 0.0118 23 6 5.4161 5.2849 0.4630 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5894 3.4681 0.8926 30 1 3.5802 3.4711 -0.8873 31 1 5.7462 3.2206 2.0308 32 1 5.3666 1.5311 1.6188 33 1 9.8511 1.1309 2.9760 34 1 6.3774 4.2693 -2.5492 35 1 4.6564 3.9770 -2.1343 36 1 4.6488 6.3478 -2.5700 37 1 6.2721 6.5702 -1.8404 38 1 5.8867 7.8775 0.0370 39 1 4.2999 8.2588 -0.6737 40 1 4.4082 7.6950 1.0112 41 1 6.2308 5.8092 0.9625 42 1 4.7235 4.8843 1.2032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255441667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:19 Heat of formation + Delta-G solvation = -60.497035 kcal Electronic energy + Delta-G solvation = -21989.602343 eV Core-core repulsion = 18777.537926 eV Total energy + Delta-G solvation = -3212.064417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18754 -39.13344 -36.50596 -35.35606 -32.53220 -31.71488 -31.02506 -28.85597 -28.13637 -26.04311 -24.68174 -23.02661 -21.76470 -20.94930 -20.77399 -18.81741 -17.52247 -16.84141 -16.38242 -16.16980 -15.57354 -15.20779 -14.77830 -14.18317 -13.92639 -13.81506 -13.65141 -13.30648 -12.89653 -12.63623 -12.40127 -12.34383 -12.16076 -11.92714 -11.71191 -11.48003 -11.43807 -11.09383 -11.05384 -11.01360 -10.54074 -10.46968 -10.30048 -10.17413 -9.87322 -9.78960 -9.21313 -8.53195 -8.32971 -7.48561 -6.02349 -3.98382 2.73423 2.90518 3.30846 3.37141 3.38911 4.18678 4.44503 4.59391 4.94439 4.95866 4.99784 5.06264 5.17669 5.30665 5.31150 5.34284 5.46377 5.50866 5.60510 5.62589 5.65017 5.75250 5.77215 5.77302 5.87054 5.92778 5.95590 6.12273 6.17584 6.39677 6.60695 6.75983 6.81276 6.89499 7.03432 7.12957 7.59198 7.80800 7.93180 8.31088 8.65816 9.05252 9.59505 11.10834 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.008741 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.753437 B = 3202.604815 C = 5308.228889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.369 6.369 4 C 0.452 3.548 5 O -0.473 6.473 6 C 0.060 3.940 7 N -0.502 5.502 8 C 0.159 3.841 9 C -0.501 4.501 10 H 0.081 0.919 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.269 1.269 17 C 0.089 3.911 18 H 0.111 0.889 19 C -0.121 4.121 20 C 0.033 3.967 21 N -0.523 5.523 22 C 0.017 3.983 23 C 0.002 3.998 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.113 0.887 31 H -0.010 1.010 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.899 7.050 -5.606 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.293 3.707 5 O -0.357 6.357 6 C -0.069 4.069 7 N -0.226 5.226 8 C 0.033 3.967 9 C -0.539 4.539 10 H 0.099 0.901 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.699 3.301 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.194 1.194 17 C -0.020 4.020 18 H 0.128 0.872 19 C -0.159 4.159 20 C -0.095 4.095 21 N -0.247 5.247 22 C -0.132 4.132 23 C -0.127 4.127 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.007 0.993 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.943 6.174 -5.839 17.190 hybrid contribution 0.320 0.447 1.730 1.815 sum -14.623 6.621 -4.109 16.570 Atomic orbital electron populations 1.21784 0.93061 1.02582 1.03275 1.22913 0.94888 0.80996 1.02513 1.86482 1.25467 1.31741 1.85052 1.23915 0.79968 0.93426 0.73403 1.90724 1.59771 1.42625 1.42563 1.21584 0.91787 0.89481 1.04064 1.61792 1.00735 1.26751 1.33284 1.20305 0.97610 0.94678 0.84102 1.20924 0.90896 1.44328 0.97776 0.90097 1.24842 0.94711 0.95073 0.98526 1.69884 1.07407 1.46463 1.30219 0.86924 0.79772 0.79124 0.84321 1.20141 1.21221 1.19388 1.22575 1.01091 0.85839 0.92525 0.87152 1.22674 1.02146 0.93943 0.97140 1.23265 0.97503 0.96889 0.91861 1.64744 1.52216 1.05070 1.02663 1.22485 0.99622 0.90016 1.01061 1.23653 0.97242 0.95167 0.96645 0.90587 0.91667 0.91629 0.91424 0.91502 0.91287 0.86922 0.99263 0.94875 0.92731 0.90564 0.90474 0.90331 0.93734 0.95456 0.91665 0.91657 0.93319 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -5.83 10.22 -39.25 -0.40 -6.23 16 4 C 0.45 8.45 7.61 36.01 0.27 8.73 16 5 O -0.47 -10.68 14.71 -18.75 -0.28 -10.96 16 6 C 0.06 1.04 4.55 -4.97 -0.02 1.02 16 7 N -0.50 -10.41 4.11 -227.89 -0.94 -11.35 16 8 C 0.16 3.90 3.25 -4.98 -0.02 3.89 16 9 C -0.50 -14.33 8.95 -34.44 -0.31 -14.64 16 10 H 0.08 2.50 7.43 -52.49 -0.39 2.11 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 13 Si 0.87 22.07 27.47 -169.99 -4.67 17.40 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 17 C 0.09 1.61 2.90 -66.35 -0.19 1.42 16 18 H 0.11 2.29 6.73 -51.94 -0.35 1.95 16 19 C -0.12 -1.76 6.43 -24.87 -0.16 -1.92 16 20 C 0.03 0.41 6.56 -1.90 -0.01 0.40 16 21 N -0.52 -7.19 5.55 -238.70 -1.33 -8.52 16 22 C 0.02 0.20 9.40 60.06 0.56 0.76 16 23 C 0.00 0.04 5.26 -2.75 -0.01 0.02 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.07 1.16 6.58 -51.93 -0.34 0.81 16 30 H 0.11 1.72 5.84 -51.93 -0.30 1.41 16 31 H -0.01 -0.25 6.01 -51.93 -0.31 -0.56 16 32 H 0.03 0.87 5.85 -51.93 -0.30 0.57 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.11 6.02 -51.93 -0.31 0.79 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.54 7.96 -51.93 -0.41 0.13 16 38 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.81 7.73 -51.93 -0.40 0.41 16 42 H 0.08 1.34 5.39 -51.93 -0.28 1.06 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -32.67 328.76 -8.05 -40.72 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.80 Total: -0.59 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.63 Total: 1.65 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -1.49 Total: -46.94 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.68 Total: -17.19 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.67 -8.05 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255441667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.782 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds