Wall clock time and date at job start Mon Mar 30 2020 01:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46894 * 2 1 4 4 C 1.34229 * 116.99975 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00224 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47052 * 180.34703 * 6 4 3 8 8 C 1.46896 * 111.00197 * 287.14831 * 7 6 4 9 9 C 1.50701 * 109.47066 * 170.00081 * 8 7 6 10 10 H 1.07996 * 119.99742 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99532 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00206 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47243 * 89.99786 * 13 11 9 15 15 H 1.48500 * 109.47013 * 209.99534 * 13 11 9 16 16 H 1.48502 * 109.47442 * 329.99897 * 13 11 9 17 17 C 1.46901 * 110.99874 * 163.19260 * 7 6 4 18 18 H 1.08989 * 110.27497 * 174.68918 * 17 7 6 19 19 C 1.54601 * 110.30800 * 296.88419 * 17 7 6 20 20 C 1.54940 * 102.92037 * 140.87045 * 19 17 7 21 21 N 1.48533 * 103.22770 * 322.58720 * 20 19 17 22 22 C 1.46901 * 110.99952 * 159.71815 * 21 20 19 23 23 C 1.47903 * 105.82314 * 39.20641 * 21 20 19 24 24 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46911 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.46628 * 60.00528 * 1 2 3 27 27 H 1.08997 * 109.46911 * 239.99796 * 2 1 3 28 28 H 1.08997 * 109.46628 * 119.99472 * 2 1 3 29 29 H 1.09001 * 109.47132 * 60.34793 * 6 4 3 30 30 H 1.08999 * 109.47057 * 300.34768 * 6 4 3 31 31 H 1.09001 * 109.46738 * 290.00171 * 8 7 6 32 32 H 1.08997 * 109.46806 * 50.00153 * 8 7 6 33 33 H 0.97003 * 120.00276 * 179.97438 * 12 11 9 34 34 H 1.08996 * 110.72307 * 259.22803 * 19 17 7 35 35 H 1.08997 * 110.72616 * 22.52029 * 19 17 7 36 36 H 1.09000 * 110.67019 * 204.14942 * 20 19 17 37 37 H 1.08999 * 110.66500 * 81.01838 * 20 19 17 38 38 H 1.08997 * 109.47466 * 302.60240 * 22 21 20 39 39 H 1.09006 * 109.47284 * 62.60440 * 22 21 20 40 40 H 1.09006 * 109.47391 * 182.60188 * 22 21 20 41 41 H 1.08999 * 109.91734 * 94.02046 * 23 21 20 42 42 H 1.09000 * 109.91865 * 215.12301 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 7 5.3877 2.8606 -0.0077 8 6 5.8990 2.4270 1.2994 9 6 7.3709 2.1235 1.1875 10 1 7.8760 2.2414 0.2403 11 6 8.0728 1.6964 2.2948 12 7 9.3571 1.4311 2.1970 13 14 7.1991 1.4931 3.9332 14 1 6.6695 0.1102 4.0437 15 1 8.1569 1.7462 5.0396 16 1 6.0765 2.4614 4.0192 17 6 5.9801 4.1448 -0.4050 18 1 7.0656 4.1034 -0.3166 19 6 5.5708 4.4993 -1.8531 20 6 5.3285 6.0279 -1.7802 21 7 4.7036 6.2097 -0.4451 22 6 4.8330 7.5999 0.0118 23 6 5.4161 5.2849 0.4630 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5894 3.4681 0.8926 30 1 3.5802 3.4711 -0.8873 31 1 5.7462 3.2206 2.0308 32 1 5.3666 1.5311 1.6188 33 1 9.8511 1.1309 2.9760 34 1 6.3774 4.2693 -2.5492 35 1 4.6564 3.9770 -2.1343 36 1 4.6488 6.3478 -2.5700 37 1 6.2721 6.5702 -1.8404 38 1 5.8867 7.8775 0.0370 39 1 4.2999 8.2588 -0.6737 40 1 4.4082 7.6950 1.0112 41 1 6.2308 5.8092 0.9625 42 1 4.7235 4.8843 1.2032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255441667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:19 Heat of formation + Delta-G solvation = -84.781874 kcal Electronic energy + Delta-G solvation = -21990.655413 eV Core-core repulsion = 18777.537926 eV Total energy + Delta-G solvation = -3213.117487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61938 -40.43801 -37.86642 -36.85440 -34.68362 -32.71979 -32.28276 -30.56611 -29.53177 -27.44696 -26.02425 -24.17141 -23.46521 -22.28206 -21.96223 -20.32175 -18.98782 -18.89187 -17.74571 -17.55706 -16.84774 -16.52470 -16.40541 -15.65741 -15.34469 -15.21633 -14.87834 -14.71104 -14.48312 -13.95293 -13.91300 -13.57164 -13.41460 -13.22110 -12.90305 -12.84034 -12.63827 -12.53813 -12.44564 -12.18457 -12.17514 -12.05202 -11.88287 -11.72100 -11.48375 -11.31595 -11.23940 -10.78830 -9.44225 -9.09159 -8.29943 -6.30948 1.26966 1.28121 1.30731 1.39242 1.62410 2.30603 3.00893 3.08343 3.14944 3.74443 3.80118 3.89741 4.01495 4.12021 4.16837 4.20765 4.30334 4.36135 4.37548 4.45625 4.58488 4.61939 4.69073 4.84385 4.88001 4.91095 4.95040 4.97717 5.00748 5.04397 5.16374 5.22975 5.27217 5.47024 5.55441 5.78376 5.96420 6.08417 6.27065 6.52329 6.72707 6.90521 7.30761 8.86717 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.008741 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.753437 B = 3202.604815 C = 5308.228889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.361 6.361 4 C 0.456 3.544 5 O -0.521 6.521 6 C 0.065 3.935 7 N -0.521 5.521 8 C 0.175 3.825 9 C -0.504 4.504 10 H 0.040 0.960 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.937 3.063 14 H -0.276 1.276 15 H -0.276 1.276 16 H -0.249 1.249 17 C 0.085 3.915 18 H 0.070 0.930 19 C -0.114 4.114 20 C 0.040 3.960 21 N -0.522 5.522 22 C 0.016 3.984 23 C 0.013 3.987 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.141 0.859 31 H -0.004 1.004 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 8.509 -5.591 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.299 3.701 5 O -0.409 6.409 6 C -0.064 4.064 7 N -0.245 5.245 8 C 0.048 3.952 9 C -0.543 4.543 10 H 0.058 0.942 11 C -0.186 4.186 12 N -0.587 5.587 13 Si 0.761 3.239 14 H -0.201 1.201 15 H -0.201 1.201 16 H -0.173 1.173 17 C -0.025 4.025 18 H 0.088 0.912 19 C -0.152 4.152 20 C -0.088 4.088 21 N -0.246 5.246 22 C -0.133 4.133 23 C -0.117 4.117 24 H 0.118 0.882 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.013 0.987 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.005 7.669 -5.844 20.424 hybrid contribution 1.254 -0.014 1.604 2.036 sum -16.751 7.655 -4.240 18.899 Atomic orbital electron populations 1.21800 0.89668 1.04371 1.03915 1.23272 0.97473 0.79516 1.02065 1.86480 1.23631 1.33475 1.84216 1.24148 0.80605 0.93276 0.72052 1.90712 1.61044 1.44072 1.45034 1.21649 0.89443 0.89330 1.05959 1.61605 1.03084 1.28696 1.31093 1.19934 0.94665 0.94185 0.86382 1.21145 0.93169 1.43763 0.96201 0.94169 1.25725 0.95396 0.94841 1.02677 1.70030 1.09156 1.47920 1.31584 0.85874 0.79252 0.79339 0.79482 1.20137 1.20099 1.17267 1.22512 0.98858 0.85578 0.95506 0.91181 1.22641 1.02336 0.95792 0.94444 1.23305 0.98455 0.94992 0.92006 1.64782 1.51473 1.05868 1.02489 1.22570 0.99953 0.88839 1.01929 1.23429 0.96774 0.94970 0.96561 0.88223 0.91218 0.90745 0.91635 0.92398 0.89856 0.84159 0.98691 0.96374 0.92498 0.90541 0.89743 0.87468 0.93378 0.95641 0.89307 0.91359 0.94440 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.29 71.98 0.74 -1.48 16 2 C 0.05 1.25 6.19 71.98 0.45 1.70 16 3 O -0.36 -10.80 10.22 -51.41 -0.53 -11.33 16 4 C 0.46 16.71 7.61 71.24 0.54 17.26 16 5 O -0.52 -23.84 14.71 21.97 0.32 -23.51 16 6 C 0.06 2.16 4.55 85.56 0.39 2.55 16 7 N -0.52 -21.80 4.11 -874.91 -3.60 -25.40 16 8 C 0.18 8.74 3.25 85.56 0.28 9.02 16 9 C -0.50 -30.10 8.95 25.60 0.23 -29.87 16 10 H 0.04 2.65 7.43 -2.91 -0.02 2.63 16 11 C 0.01 0.65 5.47 84.66 0.46 1.11 16 12 N -0.95 -60.56 13.96 21.45 0.30 -60.27 16 13 Si 0.94 46.00 27.47 68.60 1.88 47.88 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 17 C 0.08 3.09 2.90 45.80 0.13 3.22 16 18 H 0.07 3.10 6.73 -2.39 -0.02 3.08 16 19 C -0.11 -3.17 6.43 31.80 0.20 -2.96 16 20 C 0.04 0.89 6.56 86.65 0.57 1.46 16 21 N -0.52 -12.94 5.55 -909.13 -5.05 -17.98 16 22 C 0.02 0.31 9.40 127.69 1.20 1.51 16 23 C 0.01 0.40 5.26 86.45 0.45 0.85 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.08 2.61 6.58 -2.39 -0.02 2.59 16 30 H 0.14 3.90 5.84 -2.39 -0.01 3.89 16 31 H 0.00 -0.21 6.01 -2.39 -0.01 -0.23 16 32 H 0.02 0.97 5.85 -2.39 -0.01 0.95 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.23 6.02 -2.39 -0.01 2.21 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 38 H 0.02 0.52 8.00 -2.39 -0.02 0.50 16 39 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.04 1.25 7.73 -2.39 -0.02 1.23 16 42 H 0.07 2.36 5.39 -2.39 -0.01 2.35 16 Total: -1.00 -73.52 328.76 -0.08 -73.59 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.94 Total: 12.65 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.65 Total: 4.37 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -8.35 Total: -103.65 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.20 Total: -34.84 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -73.52 -0.08 -73.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255441667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.189 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds