Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99842 * 2 1 4 4 H 1.09003 * 109.47156 * 29.99594 * 3 2 1 5 5 C 1.50695 * 109.46873 * 270.00005 * 3 2 1 6 6 O 1.21279 * 120.00446 * 354.99756 * 5 3 2 7 7 N 1.34775 * 119.99843 * 175.00132 * 5 3 2 8 8 C 1.46502 * 119.99998 * 179.97438 * 7 5 3 9 9 C 1.53009 * 109.47329 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.46967 * 180.02562 * 9 8 7 11 11 N 1.46508 * 109.46610 * 179.97438 * 10 9 8 12 12 C 1.46489 * 119.99941 * 269.99612 * 11 10 9 13 13 C 1.36936 * 119.99723 * 90.00332 * 11 10 9 14 14 H 1.08005 * 120.00532 * 20.35355 * 13 11 10 15 15 C 1.38808 * 119.99751 * 200.36252 * 13 11 10 16 16 N 1.31618 * 120.00149 * 14.98115 * 15 13 11 17 17 Si 1.86802 * 120.00064 * 194.98532 * 15 13 11 18 18 H 1.48508 * 109.47273 * 85.00084 * 17 15 13 19 19 H 1.48503 * 109.47417 * 204.99953 * 17 15 13 20 20 H 1.48503 * 109.46966 * 325.00183 * 17 15 13 21 21 C 1.52996 * 109.47104 * 149.99666 * 3 2 1 22 22 C 1.52997 * 117.50160 * 8.74709 * 21 3 2 23 23 C 1.52997 * 117.50240 * 300.08563 * 21 3 2 24 24 H 1.09003 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47429 * 60.00319 * 1 2 3 26 26 H 1.09000 * 109.47331 * 299.99783 * 1 2 3 27 27 H 0.96999 * 120.00470 * 359.97438 * 7 5 3 28 28 H 1.08994 * 109.47549 * 299.99713 * 8 7 5 29 29 H 1.09003 * 109.47225 * 60.00146 * 8 7 5 30 30 H 1.08994 * 109.46733 * 300.00411 * 9 8 7 31 31 H 1.09003 * 109.46686 * 60.00014 * 9 8 7 32 32 H 1.08995 * 109.47094 * 299.99671 * 10 9 8 33 33 H 1.08997 * 109.47118 * 60.00225 * 10 9 8 34 34 H 1.09008 * 109.47108 * 95.10133 * 12 11 10 35 35 H 1.08996 * 109.47459 * 215.09425 * 12 11 10 36 36 H 1.08996 * 109.47674 * 335.10219 * 12 11 10 37 37 H 0.97007 * 119.99893 * 179.97438 * 16 15 13 38 38 H 1.09007 * 115.54850 * 154.41910 * 21 3 2 39 39 H 1.08998 * 117.49851 * 359.97438 * 22 21 3 40 40 H 1.08999 * 117.50133 * 145.01704 * 22 21 3 41 41 H 1.08998 * 117.50105 * 214.97794 * 23 21 3 42 42 H 1.09001 * 117.49619 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2144 1.7643 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6587 3.0124 -1.6686 8 6 2.8579 3.4583 -3.0498 9 6 3.3625 4.9028 -3.0517 10 6 3.5698 5.3686 -4.4942 11 7 4.0525 6.7519 -4.4960 12 6 3.0964 7.8612 -4.5342 13 6 5.3973 7.0079 -4.4621 14 1 6.1001 6.2439 -4.7602 15 6 5.8571 8.2492 -4.0445 16 7 5.0488 9.0708 -3.4090 17 14 7.6233 8.7537 -4.3846 18 1 7.7182 9.3357 -5.7475 19 1 8.0509 9.7643 -3.3840 20 1 8.5049 7.5622 -4.2926 21 6 3.3588 1.2633 0.7213 22 6 3.9152 -0.1108 1.0992 23 6 3.3636 0.8169 2.1847 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 2.8467 3.6154 -0.9324 28 1 3.5917 2.8162 -3.5367 29 1 1.9123 3.4035 -3.5892 30 1 2.6284 5.5447 -2.5649 31 1 4.3080 4.9580 -2.5122 32 1 4.3038 4.7267 -4.9814 33 1 2.6241 5.3134 -5.0333 34 1 2.9004 8.2071 -3.5192 35 1 3.5120 8.6790 -5.1227 36 1 2.1653 7.5229 -4.9888 37 1 5.3703 9.9381 -3.1168 38 1 4.0734 2.0322 0.4273 39 1 3.3203 -0.9849 0.8344 40 1 4.9958 -0.2460 1.0542 41 1 4.0817 1.2916 2.8533 42 1 2.4059 0.5536 2.6337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264981735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -38.145291 kcal Electronic energy + Delta-G solvation = -20766.859615 eV Core-core repulsion = 17555.764442 eV Total energy + Delta-G solvation = -3211.095173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21113 -38.03678 -36.40904 -36.11209 -34.66851 -32.05475 -30.32040 -28.78036 -26.54511 -25.89659 -24.93191 -22.55646 -22.07474 -21.47517 -20.57073 -19.89411 -17.63798 -16.93900 -16.74533 -16.32263 -15.45045 -15.30707 -14.91149 -14.71128 -14.48483 -13.95942 -13.64354 -13.34718 -13.19233 -12.90996 -12.63525 -11.83978 -11.79252 -11.57359 -11.53873 -11.31993 -11.09205 -10.87918 -10.80382 -10.72546 -10.61892 -10.48327 -10.38116 -10.10063 -9.90539 -9.77848 -9.26530 -8.92552 -8.55220 -6.80088 -5.73811 -3.17348 2.57994 3.04136 3.38053 3.44521 3.45205 3.55473 3.65831 4.39699 4.49857 4.61075 4.65773 4.92063 4.95535 5.08128 5.17540 5.27312 5.28794 5.43125 5.46896 5.48107 5.52295 5.68468 5.84460 5.88419 5.94005 6.06737 6.12401 6.23448 6.43035 6.59622 6.73688 6.78224 6.81862 6.99727 7.36894 7.58387 7.70525 7.80304 8.26861 8.38149 9.22804 9.86939 10.34984 11.31430 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.003405 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.314589 B = 8221.843610 C = 8839.649805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.104 3.896 4 H 0.089 0.911 5 C 0.491 3.509 6 O -0.530 6.530 7 N -0.723 5.723 8 C 0.120 3.880 9 C -0.150 4.150 10 C 0.156 3.844 11 N -0.603 5.603 12 C 0.163 3.837 13 C -0.255 4.255 14 H 0.070 0.930 15 C 0.000 4.000 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.169 4.169 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.401 0.599 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.028 0.972 35 H 0.043 0.957 36 H -0.002 1.002 37 H 0.252 0.748 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 -14.450 10.441 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.042 3.958 4 H 0.106 0.894 5 C 0.275 3.725 6 O -0.406 6.406 7 N -0.377 5.377 8 C -0.004 4.004 9 C -0.191 4.191 10 C 0.028 3.972 11 N -0.325 5.325 12 C 0.018 3.982 13 C -0.384 4.384 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.554 5.554 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C -0.181 4.181 22 C -0.195 4.195 23 C -0.206 4.206 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.235 0.765 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.016 0.984 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.654 -14.987 9.800 19.474 hybrid contribution 0.840 1.027 0.294 1.359 sum -6.814 -13.959 10.094 18.525 Atomic orbital electron populations 1.22861 0.80665 1.03166 1.00076 1.87963 1.19942 1.24963 1.94415 1.21436 0.95325 0.86675 0.92327 0.89355 1.21186 0.77517 0.82009 0.91766 1.90697 1.50184 1.53764 1.46001 1.46213 1.67310 1.14102 1.10037 1.21515 1.00792 0.96582 0.81522 1.22555 1.01457 0.92075 1.02967 1.20713 0.97101 0.87115 0.92272 1.44002 1.03314 0.99506 1.85675 1.20797 0.88408 0.89780 0.99224 1.19243 0.82586 0.98876 1.37711 0.91263 1.24964 0.97732 0.98400 0.98694 1.70086 1.34926 1.09724 1.40628 0.86282 0.84576 0.78147 0.77594 1.21463 1.21786 1.20562 1.22286 0.96600 1.01267 0.97973 1.22891 1.00796 0.93987 1.01833 1.22970 1.03192 1.03867 0.90569 0.89251 0.93566 0.93997 0.76537 0.91768 0.92029 0.92185 0.91277 0.93592 0.94274 0.95351 0.93864 0.98367 0.93792 0.86085 0.87434 0.88760 0.88422 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.36 16 2 O -0.36 -4.26 8.24 -55.09 -0.45 -4.72 16 3 C 0.10 1.15 2.87 -27.89 -0.08 1.07 16 4 H 0.09 0.78 7.79 -51.93 -0.40 0.37 16 5 C 0.49 7.00 7.12 -10.99 -0.08 6.92 16 6 O -0.53 -9.73 16.51 -14.30 -0.24 -9.97 16 7 N -0.72 -9.57 5.44 -60.29 -0.33 -9.90 16 8 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 9 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 10 C 0.16 3.13 5.71 -4.04 -0.02 3.11 16 11 N -0.60 -15.04 2.93 -181.13 -0.53 -15.57 16 12 C 0.16 3.99 9.02 59.84 0.54 4.53 16 13 C -0.25 -6.95 9.68 -15.06 -0.15 -7.10 16 14 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 15 C 0.00 0.00 5.06 -17.43 -0.09 -0.08 16 16 N -0.91 -26.22 10.67 55.49 0.59 -25.62 16 17 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.16 -1.61 5.67 -90.62 -0.51 -2.12 16 22 C -0.16 -1.53 9.88 -26.70 -0.26 -1.79 16 23 C -0.17 -1.38 10.19 -26.70 -0.27 -1.65 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.40 4.42 8.47 -40.82 -0.35 4.07 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.03 0.74 7.40 -51.92 -0.38 0.36 16 35 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 36 H 0.00 -0.05 7.83 -51.93 -0.41 -0.45 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.12 1.16 8.03 -51.92 -0.42 0.74 16 39 H 0.11 1.15 7.06 -51.93 -0.37 0.78 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -32.45 349.25 -8.03 -40.47 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.30 Total: 0.07 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.01 Total: 3.27 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.27 Total: -51.09 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.69 Total: -14.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.45 -8.03 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264981735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.326 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds