Wall clock time and date at job start Mon Mar 30 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99842 * 2 1 4 4 H 1.09003 * 109.47156 * 29.99594 * 3 2 1 5 5 C 1.50695 * 109.46873 * 270.00005 * 3 2 1 6 6 O 1.21279 * 120.00446 * 354.99756 * 5 3 2 7 7 N 1.34775 * 119.99843 * 175.00132 * 5 3 2 8 8 C 1.46502 * 119.99998 * 179.97438 * 7 5 3 9 9 C 1.53009 * 109.47329 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.46967 * 180.02562 * 9 8 7 11 11 N 1.46508 * 109.46610 * 179.97438 * 10 9 8 12 12 C 1.46489 * 119.99941 * 269.99612 * 11 10 9 13 13 C 1.36936 * 119.99723 * 90.00332 * 11 10 9 14 14 H 1.08005 * 120.00532 * 20.35355 * 13 11 10 15 15 C 1.38808 * 119.99751 * 200.36252 * 13 11 10 16 16 N 1.31618 * 120.00149 * 14.98115 * 15 13 11 17 17 Si 1.86802 * 120.00064 * 194.98532 * 15 13 11 18 18 H 1.48508 * 109.47273 * 85.00084 * 17 15 13 19 19 H 1.48503 * 109.47417 * 204.99953 * 17 15 13 20 20 H 1.48503 * 109.46966 * 325.00183 * 17 15 13 21 21 C 1.52996 * 109.47104 * 149.99666 * 3 2 1 22 22 C 1.52997 * 117.50160 * 8.74709 * 21 3 2 23 23 C 1.52997 * 117.50240 * 300.08563 * 21 3 2 24 24 H 1.09003 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47429 * 60.00319 * 1 2 3 26 26 H 1.09000 * 109.47331 * 299.99783 * 1 2 3 27 27 H 0.96999 * 120.00470 * 359.97438 * 7 5 3 28 28 H 1.08994 * 109.47549 * 299.99713 * 8 7 5 29 29 H 1.09003 * 109.47225 * 60.00146 * 8 7 5 30 30 H 1.08994 * 109.46733 * 300.00411 * 9 8 7 31 31 H 1.09003 * 109.46686 * 60.00014 * 9 8 7 32 32 H 1.08995 * 109.47094 * 299.99671 * 10 9 8 33 33 H 1.08997 * 109.47118 * 60.00225 * 10 9 8 34 34 H 1.09008 * 109.47108 * 95.10133 * 12 11 10 35 35 H 1.08996 * 109.47459 * 215.09425 * 12 11 10 36 36 H 1.08996 * 109.47674 * 335.10219 * 12 11 10 37 37 H 0.97007 * 119.99893 * 179.97438 * 16 15 13 38 38 H 1.09007 * 115.54850 * 154.41910 * 21 3 2 39 39 H 1.08998 * 117.49851 * 359.97438 * 22 21 3 40 40 H 1.08999 * 117.50133 * 145.01704 * 22 21 3 41 41 H 1.08998 * 117.50105 * 214.97794 * 23 21 3 42 42 H 1.09001 * 117.49619 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2144 1.7643 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6587 3.0124 -1.6686 8 6 2.8579 3.4583 -3.0498 9 6 3.3625 4.9028 -3.0517 10 6 3.5698 5.3686 -4.4942 11 7 4.0525 6.7519 -4.4960 12 6 3.0964 7.8612 -4.5342 13 6 5.3973 7.0079 -4.4621 14 1 6.1001 6.2439 -4.7602 15 6 5.8571 8.2492 -4.0445 16 7 5.0488 9.0708 -3.4090 17 14 7.6233 8.7537 -4.3846 18 1 7.7182 9.3357 -5.7475 19 1 8.0509 9.7643 -3.3840 20 1 8.5049 7.5622 -4.2926 21 6 3.3588 1.2633 0.7213 22 6 3.9152 -0.1108 1.0992 23 6 3.3636 0.8169 2.1847 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 2.8467 3.6154 -0.9324 28 1 3.5917 2.8162 -3.5367 29 1 1.9123 3.4035 -3.5892 30 1 2.6284 5.5447 -2.5649 31 1 4.3080 4.9580 -2.5122 32 1 4.3038 4.7267 -4.9814 33 1 2.6241 5.3134 -5.0333 34 1 2.9004 8.2071 -3.5192 35 1 3.5120 8.6790 -5.1227 36 1 2.1653 7.5229 -4.9888 37 1 5.3703 9.9381 -3.1168 38 1 4.0734 2.0322 0.4273 39 1 3.3203 -0.9849 0.8344 40 1 4.9958 -0.2460 1.0542 41 1 4.0817 1.2916 2.8533 42 1 2.4059 0.5536 2.6337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264981735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:10 Heat of formation + Delta-G solvation = -58.462556 kcal Electronic energy + Delta-G solvation = -20767.740638 eV Core-core repulsion = 17555.764442 eV Total energy + Delta-G solvation = -3211.976196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24175 -39.01617 -37.91057 -37.09640 -36.10361 -33.78525 -31.93858 -29.82842 -27.95147 -27.43531 -26.37498 -23.66131 -23.21173 -22.47901 -22.05717 -21.05172 -18.76569 -18.64240 -17.85789 -17.25375 -16.84757 -16.52486 -16.34948 -15.80995 -15.61239 -15.33817 -15.07645 -14.72388 -14.50335 -14.37830 -13.93511 -13.34226 -13.02286 -12.82539 -12.71769 -12.54456 -12.47732 -12.41131 -12.28918 -12.25844 -12.02085 -11.87647 -11.75063 -11.47353 -11.36333 -11.11339 -10.63570 -10.27630 -10.12421 -8.81891 -7.82484 -5.28117 1.47374 1.49144 1.49542 1.56884 2.02663 2.52258 2.70819 2.93322 3.31359 3.57035 3.65927 3.77896 3.91794 4.11557 4.13517 4.23777 4.30358 4.39221 4.48553 4.50323 4.53795 4.64944 4.79864 4.81200 4.84919 4.87134 4.90706 4.99683 5.21831 5.29551 5.31426 5.35183 5.38726 5.47806 5.64961 5.72995 5.97276 6.33091 6.52339 7.15918 7.17766 7.88649 8.31181 9.21080 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.003405 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.314589 B = 8221.843610 C = 8839.649805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.375 6.375 3 C 0.109 3.891 4 H 0.116 0.884 5 C 0.489 3.511 6 O -0.576 6.576 7 N -0.715 5.715 8 C 0.132 3.868 9 C -0.128 4.128 10 C 0.150 3.850 11 N -0.620 5.620 12 C 0.175 3.825 13 C -0.264 4.264 14 H 0.071 0.929 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.965 3.035 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.270 1.270 21 C -0.175 4.175 22 C -0.172 4.172 23 C -0.146 4.146 24 H 0.101 0.899 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.413 0.587 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.006 0.994 35 H 0.015 0.985 36 H 0.031 0.969 37 H 0.248 0.752 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -15.137 11.524 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.048 3.952 4 H 0.134 0.866 5 C 0.276 3.724 6 O -0.455 6.455 7 N -0.368 5.368 8 C 0.008 3.992 9 C -0.169 4.169 10 C 0.023 3.977 11 N -0.343 5.343 12 C 0.030 3.970 13 C -0.394 4.394 14 H 0.089 0.911 15 C -0.247 4.247 16 N -0.584 5.584 17 Si 0.794 3.206 18 H -0.214 1.214 19 H -0.221 1.221 20 H -0.195 1.195 21 C -0.193 4.193 22 C -0.209 4.209 23 C -0.183 4.183 24 H 0.119 0.881 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.249 0.751 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.034 0.966 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.773 -15.694 10.902 20.630 hybrid contribution 0.818 1.171 -0.076 1.430 sum -6.956 -14.522 10.827 19.404 Atomic orbital electron populations 1.23029 0.79437 1.04245 1.00539 1.87952 1.21419 1.25532 1.94294 1.21505 0.96604 0.86970 0.90161 0.86633 1.21861 0.76259 0.81450 0.92874 1.90673 1.52243 1.54941 1.47688 1.46085 1.66785 1.14298 1.09655 1.21216 1.00511 0.94762 0.82718 1.22190 1.00544 0.93371 1.00747 1.20891 0.97977 0.84799 0.94000 1.44230 1.02805 1.01335 1.85920 1.20566 0.89469 0.89266 0.97676 1.19552 0.83910 0.99006 1.36936 0.91143 1.25686 1.01395 0.98584 0.99028 1.70237 1.36489 1.09793 1.41843 0.85308 0.80506 0.77783 0.76991 1.21436 1.22108 1.19480 1.22323 0.96095 1.01413 0.99498 1.22908 1.00994 0.93602 1.03366 1.23045 1.03693 1.01931 0.89611 0.88056 0.95074 0.91425 0.75058 0.92505 0.91802 0.92447 0.92980 0.93393 0.92247 0.97556 0.96636 0.95032 0.94318 0.85914 0.88758 0.88277 0.86874 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.62 16 2 O -0.37 -8.49 8.24 -129.99 -1.07 -9.56 16 3 C 0.11 2.22 2.87 29.85 0.09 2.31 16 4 H 0.12 1.70 7.79 -2.39 -0.02 1.68 16 5 C 0.49 13.45 7.12 87.66 0.62 14.08 16 6 O -0.58 -21.04 16.51 15.96 0.26 -20.78 16 7 N -0.71 -17.94 5.44 -463.05 -2.52 -20.46 16 8 C 0.13 3.85 5.67 86.38 0.49 4.34 16 9 C -0.13 -4.32 5.65 30.60 0.17 -4.14 16 10 C 0.15 5.82 5.71 86.38 0.49 6.31 16 11 N -0.62 -30.63 2.93 -726.96 -2.13 -32.76 16 12 C 0.18 8.57 9.02 127.77 1.15 9.72 16 13 C -0.26 -14.35 9.68 84.03 0.81 -13.53 16 14 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 15 C -0.05 -2.87 5.06 84.86 0.43 -2.44 16 16 N -0.94 -54.64 10.67 21.65 0.23 -54.40 16 17 Si 0.97 44.69 29.58 68.60 2.03 46.71 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.17 -3.12 5.67 -10.80 -0.06 -3.18 16 22 C -0.17 -3.09 9.88 30.62 0.30 -2.78 16 23 C -0.15 -1.99 10.19 30.62 0.31 -1.68 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 27 H 0.41 8.37 8.47 -92.71 -0.79 7.59 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 33 H 0.06 2.06 7.86 -2.39 -0.02 2.05 16 34 H 0.01 0.33 7.40 -2.38 -0.02 0.31 16 35 H 0.01 0.80 7.21 -2.39 -0.02 0.79 16 36 H 0.03 1.30 7.83 -2.39 -0.02 1.28 16 37 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 38 H 0.12 2.13 8.03 -2.38 -0.02 2.11 16 39 H 0.09 1.95 7.06 -2.39 -0.02 1.94 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.53 349.25 3.05 -66.49 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.20 Total: 14.15 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 6.04 Total: 10.61 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.42 Total: -107.62 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.81 Total: -30.34 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.53 3.05 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264981735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds