Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36944 * 120.00247 * 2 1 4 4 H 1.08000 * 119.99804 * 203.04873 * 3 2 1 5 5 C 1.38810 * 120.00044 * 23.04490 * 3 2 1 6 6 N 1.31617 * 119.99860 * 12.92964 * 5 3 2 7 7 Si 1.86797 * 119.99994 * 192.93102 * 5 3 2 8 8 H 1.48501 * 109.47109 * 90.00357 * 7 5 3 9 9 H 1.48504 * 109.47062 * 209.99704 * 7 5 3 10 10 H 1.48500 * 109.47299 * 329.99959 * 7 5 3 11 11 C 1.46498 * 119.99970 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47265 * 89.99750 * 11 2 1 13 13 C 1.52994 * 109.47359 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.47455 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00274 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99840 * 180.27571 * 15 14 13 18 18 C 1.53005 * 109.46932 * 179.72505 * 17 15 14 19 19 O 1.42893 * 112.84735 * 53.80340 * 18 17 15 20 20 C 1.53782 * 113.61437 * 282.49507 * 18 17 15 21 21 C 1.53777 * 87.07958 * 220.02085 * 20 18 17 22 22 C 1.53775 * 87.08351 * 25.43240 * 21 20 18 23 23 H 1.08998 * 109.46943 * 275.12621 * 1 2 3 24 24 H 1.09010 * 109.47118 * 35.12070 * 1 2 3 25 25 H 1.08994 * 109.47151 * 155.12287 * 1 2 3 26 26 H 0.96998 * 120.00144 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46866 * 329.99952 * 11 2 1 28 28 H 1.09004 * 109.47168 * 209.99814 * 11 2 1 29 29 H 1.09011 * 109.47206 * 60.00149 * 12 11 2 30 30 H 1.08996 * 109.47247 * 300.00456 * 12 11 2 31 31 H 1.08998 * 109.47429 * 60.00277 * 13 12 11 32 32 H 1.09004 * 109.47010 * 300.00025 * 13 12 11 33 33 H 0.97009 * 119.99733 * 359.97438 * 14 13 12 34 34 H 1.09007 * 109.47071 * 299.72157 * 17 15 14 35 35 H 1.08997 * 109.47416 * 59.72144 * 17 15 14 36 36 H 0.96702 * 114.00187 * 309.66447 * 19 18 17 37 37 H 1.09003 * 113.60980 * 334.56966 * 20 18 17 38 38 H 1.08997 * 113.61157 * 105.46848 * 20 18 17 39 39 H 1.08999 * 113.61289 * 270.88142 * 21 20 18 40 40 H 1.08996 * 113.69321 * 139.99231 * 21 20 18 41 41 H 1.09003 * 113.61462 * 220.01668 * 22 21 20 42 42 H 1.09001 * 113.61657 * 89.11431 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2598 1.1458 7 14 2.3161 4.0073 0.1455 8 1 1.7989 4.5534 -1.1350 9 1 1.9760 4.9364 1.2530 10 1 3.7910 3.8577 0.0600 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 6 3.2168 -3.0364 -1.4412 14 7 3.4615 -3.4597 -2.8221 15 6 4.1232 -4.6078 -3.0679 16 8 4.5165 -5.2904 -2.1458 17 6 4.3803 -5.0400 -4.4885 18 6 5.1490 -6.3630 -4.4879 19 8 4.5064 -7.3777 -3.7139 20 6 6.6469 -6.2049 -4.1779 21 6 6.9026 -7.2668 -5.2603 22 6 5.5693 -6.8318 -5.8909 23 1 -0.3633 0.0918 1.0235 24 1 -0.3634 0.8406 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0148 3.0663 1.4750 27 1 1.6084 -2.0281 0.5147 28 1 3.1499 -1.1382 0.5143 29 1 3.0416 -0.9517 -1.9560 30 1 1.5000 -1.8416 -1.9555 31 1 2.6274 -3.7956 -0.9271 32 1 4.1693 -2.9062 -0.9273 33 1 3.1466 -2.9139 -3.5597 34 1 3.4299 -5.1723 -5.0057 35 1 4.9689 -4.2780 -4.9993 36 1 4.2606 -7.0958 -2.8221 37 1 7.0433 -5.2210 -4.4291 38 1 6.9216 -6.5293 -3.1742 39 1 6.8932 -8.2885 -4.8804 40 1 7.7706 -7.0555 -5.8848 41 1 4.9741 -7.6625 -6.2702 42 1 5.6711 -6.0194 -6.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264983694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = -54.890118 kcal Electronic energy + Delta-G solvation = -20601.284772 eV Core-core repulsion = 17389.463489 eV Total energy + Delta-G solvation = -3211.821283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58852 -38.80010 -36.31567 -34.94969 -34.46524 -32.23375 -30.88068 -29.52698 -26.02172 -25.94750 -25.40423 -23.53707 -21.92513 -20.87807 -20.01642 -19.82351 -17.14976 -16.84790 -16.67627 -15.98245 -15.88349 -15.16385 -15.12925 -14.74486 -14.51137 -13.93613 -13.47275 -13.16410 -13.11263 -12.77570 -12.69732 -12.49054 -11.82486 -11.70091 -11.49850 -11.40660 -11.08425 -11.06443 -10.83309 -10.82642 -10.66509 -10.50687 -10.23179 -9.91446 -9.84367 -9.83528 -9.79580 -9.09036 -8.56840 -6.76640 -5.74001 -3.21585 2.46774 3.09878 3.36130 3.42357 3.43940 3.90415 4.29421 4.36251 4.43558 4.47828 4.60609 4.91148 5.04270 5.17736 5.20296 5.38011 5.39583 5.41176 5.41941 5.50831 5.67100 5.75699 5.84945 5.87199 6.01199 6.05048 6.09227 6.15170 6.37062 6.46855 6.71685 6.72384 6.89901 7.35050 7.39958 7.63372 7.71362 7.78562 8.12238 8.38388 9.22088 9.85557 10.34590 11.30765 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039180 B = 0.002837 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.482321 B = 9867.502980 C =10237.750041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.151 4.151 13 C 0.118 3.882 14 N -0.723 5.723 15 C 0.513 3.487 16 O -0.549 6.549 17 C -0.166 4.166 18 C 0.129 3.871 19 O -0.550 6.550 20 C -0.162 4.162 21 C -0.135 4.135 22 C -0.129 4.129 23 H 0.031 0.969 24 H 0.040 0.960 25 H -0.003 1.003 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.402 0.598 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.391 0.609 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 -15.289 -13.778 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.006 4.006 14 N -0.373 5.373 15 C 0.300 3.700 16 O -0.428 6.428 17 C -0.206 4.206 18 C 0.087 3.913 19 O -0.362 6.362 20 C -0.199 4.199 21 C -0.173 4.173 22 C -0.166 4.166 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.446 -15.942 -13.512 22.540 hybrid contribution 0.023 1.749 -0.026 1.749 sum 8.469 -14.193 -13.538 21.365 Atomic orbital electron populations 1.20794 0.82657 0.95310 0.99512 1.43900 1.01862 1.00677 1.86156 1.19188 0.98273 0.85628 1.35516 0.91436 1.25045 0.97929 0.98596 0.98166 1.70069 1.19468 1.27207 1.38506 0.86246 0.78749 0.84106 0.77380 1.21530 1.21719 1.20476 1.20591 0.96365 0.88544 0.91792 1.22538 0.99455 0.94160 1.03008 1.21498 1.00494 0.97086 0.81473 1.46207 1.57327 1.23667 1.10090 1.20652 0.77285 0.80911 0.91149 1.90546 1.51809 1.53984 1.46495 1.22378 1.03746 0.99516 0.94955 1.21774 0.90636 0.85825 0.93079 1.86318 1.79601 1.38827 1.31489 1.23574 0.96565 0.99484 1.00324 1.22742 0.97005 0.99609 0.97923 1.23065 0.97260 1.01739 0.94542 0.95054 0.94151 0.98411 0.93729 0.94409 0.93284 0.91562 0.92222 0.91651 0.91535 0.76423 0.88075 0.87757 0.75433 0.89832 0.90543 0.89860 0.91440 0.90519 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.98 59.85 0.54 4.50 16 2 N -0.60 -15.00 2.92 -181.12 -0.53 -15.53 16 3 C -0.26 -6.98 9.65 -15.06 -0.15 -7.12 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.49 10.71 55.49 0.59 -25.90 16 7 Si 0.91 21.68 29.57 -169.99 -5.03 16.65 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.16 3.07 5.64 -4.04 -0.02 3.05 16 12 C -0.15 -2.39 5.65 -26.73 -0.15 -2.54 16 13 C 0.12 1.61 5.67 -4.05 -0.02 1.59 16 14 N -0.72 -8.15 5.56 -60.30 -0.33 -8.49 16 15 C 0.51 6.01 7.59 -10.98 -0.08 5.93 16 16 O -0.55 -8.10 13.59 -14.26 -0.19 -8.29 16 17 C -0.17 -1.42 5.34 -27.88 -0.15 -1.57 16 18 C 0.13 1.29 1.10 -89.80 -0.10 1.19 16 19 O -0.55 -6.91 13.39 -55.04 -0.74 -7.65 16 20 C -0.16 -1.56 7.16 -25.92 -0.19 -1.75 16 21 C -0.14 -1.13 8.02 -25.92 -0.21 -1.34 16 22 C -0.13 -1.03 7.47 -25.92 -0.19 -1.22 16 23 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 24 H 0.04 1.05 7.34 -51.92 -0.38 0.67 16 25 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 28 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.39 5.03 6.20 45.56 0.28 5.31 16 37 H 0.08 0.71 8.04 -51.93 -0.42 0.30 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -31.55 341.58 -8.58 -40.13 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.69 Total: 3.27 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.81 Total: 0.65 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.27 Total: -49.92 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.93 Total: -15.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.55 -8.58 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264983694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.756 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds