Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36944 * 120.00247 * 2 1 4 4 H 1.08000 * 119.99804 * 203.04873 * 3 2 1 5 5 C 1.38810 * 120.00044 * 23.04490 * 3 2 1 6 6 N 1.31617 * 119.99860 * 12.92964 * 5 3 2 7 7 Si 1.86797 * 119.99994 * 192.93102 * 5 3 2 8 8 H 1.48501 * 109.47109 * 90.00357 * 7 5 3 9 9 H 1.48504 * 109.47062 * 209.99704 * 7 5 3 10 10 H 1.48500 * 109.47299 * 329.99959 * 7 5 3 11 11 C 1.46498 * 119.99970 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47265 * 89.99750 * 11 2 1 13 13 C 1.52994 * 109.47359 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.47455 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00274 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99840 * 180.27571 * 15 14 13 18 18 C 1.53005 * 109.46932 * 179.72505 * 17 15 14 19 19 O 1.42893 * 112.84735 * 53.80340 * 18 17 15 20 20 C 1.53782 * 113.61437 * 282.49507 * 18 17 15 21 21 C 1.53777 * 87.07958 * 220.02085 * 20 18 17 22 22 C 1.53775 * 87.08351 * 25.43240 * 21 20 18 23 23 H 1.08998 * 109.46943 * 275.12621 * 1 2 3 24 24 H 1.09010 * 109.47118 * 35.12070 * 1 2 3 25 25 H 1.08994 * 109.47151 * 155.12287 * 1 2 3 26 26 H 0.96998 * 120.00144 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46866 * 329.99952 * 11 2 1 28 28 H 1.09004 * 109.47168 * 209.99814 * 11 2 1 29 29 H 1.09011 * 109.47206 * 60.00149 * 12 11 2 30 30 H 1.08996 * 109.47247 * 300.00456 * 12 11 2 31 31 H 1.08998 * 109.47429 * 60.00277 * 13 12 11 32 32 H 1.09004 * 109.47010 * 300.00025 * 13 12 11 33 33 H 0.97009 * 119.99733 * 359.97438 * 14 13 12 34 34 H 1.09007 * 109.47071 * 299.72157 * 17 15 14 35 35 H 1.08997 * 109.47416 * 59.72144 * 17 15 14 36 36 H 0.96702 * 114.00187 * 309.66447 * 19 18 17 37 37 H 1.09003 * 113.60980 * 334.56966 * 20 18 17 38 38 H 1.08997 * 113.61157 * 105.46848 * 20 18 17 39 39 H 1.08999 * 113.61289 * 270.88142 * 21 20 18 40 40 H 1.08996 * 113.69321 * 139.99231 * 21 20 18 41 41 H 1.09003 * 113.61462 * 220.01668 * 22 21 20 42 42 H 1.09001 * 113.61657 * 89.11431 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2598 1.1458 7 14 2.3161 4.0073 0.1455 8 1 1.7989 4.5534 -1.1350 9 1 1.9760 4.9364 1.2530 10 1 3.7910 3.8577 0.0600 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 6 3.2168 -3.0364 -1.4412 14 7 3.4615 -3.4597 -2.8221 15 6 4.1232 -4.6078 -3.0679 16 8 4.5165 -5.2904 -2.1458 17 6 4.3803 -5.0400 -4.4885 18 6 5.1490 -6.3630 -4.4879 19 8 4.5064 -7.3777 -3.7139 20 6 6.6469 -6.2049 -4.1779 21 6 6.9026 -7.2668 -5.2603 22 6 5.5693 -6.8318 -5.8909 23 1 -0.3633 0.0918 1.0235 24 1 -0.3634 0.8406 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0148 3.0663 1.4750 27 1 1.6084 -2.0281 0.5147 28 1 3.1499 -1.1382 0.5143 29 1 3.0416 -0.9517 -1.9560 30 1 1.5000 -1.8416 -1.9555 31 1 2.6274 -3.7956 -0.9271 32 1 4.1693 -2.9062 -0.9273 33 1 3.1466 -2.9139 -3.5597 34 1 3.4299 -5.1723 -5.0057 35 1 4.9689 -4.2780 -4.9993 36 1 4.2606 -7.0958 -2.8221 37 1 7.0433 -5.2210 -4.4291 38 1 6.9216 -6.5293 -3.1742 39 1 6.8932 -8.2885 -4.8804 40 1 7.7706 -7.0555 -5.8848 41 1 4.9741 -7.6625 -6.2702 42 1 5.6711 -6.0194 -6.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264983694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = -76.183588 kcal Electronic energy + Delta-G solvation = -20602.208126 eV Core-core repulsion = 17389.463489 eV Total energy + Delta-G solvation = -3212.744637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42839 -39.66127 -37.93988 -36.22495 -35.38356 -33.83240 -32.19596 -30.75174 -27.95155 -26.95507 -26.61695 -24.52335 -23.32414 -22.18909 -21.27561 -20.55110 -18.73087 -18.03741 -17.66733 -17.04287 -16.89908 -16.63176 -16.09355 -15.83666 -15.69724 -15.28182 -14.92303 -14.65206 -14.45750 -13.95214 -13.73092 -13.32819 -13.19207 -13.01409 -12.79081 -12.64279 -12.50244 -12.48806 -12.28948 -12.12843 -12.09199 -11.84271 -11.75845 -11.48663 -11.42948 -10.76980 -10.61578 -10.59785 -10.09858 -8.78023 -7.82371 -5.32381 1.47447 1.47946 1.57133 1.57571 2.18107 2.51922 3.16878 3.30919 3.54884 3.65836 3.66076 3.74788 3.93728 4.11726 4.15838 4.33154 4.42572 4.47964 4.54339 4.66307 4.74608 4.80613 4.81186 4.85762 4.86485 4.93910 5.06228 5.14736 5.24639 5.29018 5.33100 5.40764 5.47813 5.51063 5.63693 5.71404 6.33312 6.52813 6.73663 7.15562 7.24210 7.87756 8.31445 9.20774 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039180 B = 0.002837 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.482321 B = 9867.502980 C =10237.750041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.622 5.622 3 C -0.261 4.261 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.285 1.285 9 H -0.297 1.297 10 H -0.267 1.267 11 C 0.149 3.851 12 C -0.128 4.128 13 C 0.130 3.870 14 N -0.716 5.716 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.156 4.156 18 C 0.111 3.889 19 O -0.569 6.569 20 C -0.166 4.166 21 C -0.135 4.135 22 C -0.119 4.119 23 H 0.002 0.998 24 H 0.015 0.985 25 H 0.033 0.967 26 H 0.248 0.752 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.415 0.585 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.385 0.615 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 -15.341 -16.153 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.212 1.212 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.023 3.977 12 C -0.168 4.168 13 C 0.006 3.994 14 N -0.367 5.367 15 C 0.298 3.702 16 O -0.465 6.465 17 C -0.196 4.196 18 C 0.070 3.930 19 O -0.381 6.381 20 C -0.204 4.204 21 C -0.172 4.172 22 C -0.156 4.156 23 H 0.021 0.979 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.239 0.761 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.433 -16.020 -15.934 24.485 hybrid contribution -0.240 1.668 0.736 1.839 sum 9.193 -14.352 -15.198 22.836 Atomic orbital electron populations 1.20545 0.82853 0.96001 0.97588 1.44170 1.02146 1.01787 1.86417 1.19537 0.98510 0.86721 1.34393 0.90970 1.25843 0.98721 1.02073 0.98567 1.70240 1.20972 1.27608 1.40008 0.85220 0.78453 0.79692 0.76805 1.21156 1.22390 1.19194 1.20782 0.95654 0.86858 0.94412 1.22151 0.99938 0.94933 0.99794 1.21167 0.99570 0.95730 0.82957 1.46052 1.57292 1.23909 1.09429 1.21251 0.76383 0.80287 0.92251 1.90544 1.53113 1.54941 1.47921 1.22399 1.05048 0.99284 0.92826 1.22128 0.90700 0.86217 0.93980 1.86303 1.79993 1.40364 1.31405 1.23622 0.96799 1.00629 0.99345 1.22733 0.98309 0.98468 0.97731 1.23119 0.96244 1.02479 0.93726 0.97940 0.96614 0.94847 0.94318 0.93382 0.93920 0.92136 0.91644 0.91960 0.92469 0.74804 0.86144 0.84768 0.76052 0.88329 0.93159 0.91310 0.89558 0.90932 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 8.98 127.77 1.15 9.72 16 2 N -0.62 -30.65 2.92 -726.94 -2.12 -32.77 16 3 C -0.26 -14.13 9.65 84.03 0.81 -13.32 16 4 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 5 C -0.06 -3.19 5.10 84.86 0.43 -2.76 16 6 N -0.94 -55.89 10.71 21.65 0.23 -55.66 16 7 Si 0.97 44.58 29.57 68.60 2.03 46.61 16 8 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 C 0.15 5.75 5.64 86.38 0.49 6.24 16 12 C -0.13 -3.80 5.65 30.59 0.17 -3.63 16 13 C 0.13 3.33 5.67 86.38 0.49 3.82 16 14 N -0.72 -14.41 5.56 -463.07 -2.57 -16.98 16 15 C 0.51 10.94 7.59 87.66 0.67 11.61 16 16 O -0.58 -16.89 13.59 15.91 0.22 -16.68 16 17 C -0.16 -2.18 5.34 29.85 0.16 -2.02 16 18 C 0.11 2.02 1.10 -10.27 -0.01 2.01 16 19 O -0.57 -14.12 13.39 -130.04 -1.74 -15.87 16 20 C -0.17 -2.99 7.16 31.12 0.22 -2.77 16 21 C -0.14 -2.02 8.02 31.12 0.25 -1.77 16 22 C -0.12 -1.56 7.47 31.12 0.23 -1.33 16 23 H 0.00 0.12 7.34 -2.39 -0.02 0.11 16 24 H 0.02 0.81 7.34 -2.38 -0.02 0.79 16 25 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 28 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.42 6.14 8.47 -92.70 -0.79 5.35 16 34 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.13 1.11 8.05 -2.39 -0.02 1.09 16 36 H 0.39 10.11 6.20 -74.06 -0.46 9.65 16 37 H 0.10 1.44 8.04 -2.39 -0.02 1.42 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 0.89 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -68.82 341.58 0.86 -67.96 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.24 Total: 17.58 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.06 Total: 5.80 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.46 Total: -105.41 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.53 Total: -32.54 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.82 0.86 -67.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264983694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.221 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds