Wall clock time and date at job start Mon Mar 30 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46980 * 2 1 4 4 C 1.42898 * 113.99927 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46926 * 30.00644 * 4 3 2 6 6 C 1.53002 * 109.47335 * 270.00335 * 4 3 2 7 7 C 1.50702 * 109.47207 * 150.00715 * 4 3 2 8 8 O 1.21277 * 119.99749 * 4.99834 * 7 4 3 9 9 N 1.34774 * 120.00373 * 185.00318 * 7 4 3 10 10 C 1.46501 * 120.00321 * 179.97438 * 9 7 4 11 11 H 1.08993 * 109.49514 * 35.06126 * 10 9 7 12 12 C 1.53039 * 109.52231 * 155.14464 * 10 9 7 13 13 C 1.53041 * 109.53467 * 181.33108 * 12 10 9 14 14 C 1.53620 * 109.24426 * 298.51349 * 13 12 10 15 15 N 1.46922 * 108.54487 * 54.85211 * 14 13 12 16 16 C 1.36938 * 120.62815 * 126.37288 * 15 14 13 17 17 H 1.08008 * 120.00100 * 332.12129 * 16 15 14 18 18 C 1.38811 * 120.00277 * 152.12639 * 16 15 14 19 19 N 1.31619 * 119.99894 * 334.90869 * 18 16 15 20 20 Si 1.86798 * 120.00307 * 154.90583 * 18 16 15 21 21 H 1.48502 * 109.47164 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47179 * 239.99738 * 20 18 16 23 23 H 1.48506 * 109.46976 * 120.00189 * 20 18 16 24 24 C 1.46928 * 118.74141 * 306.09772 * 15 14 13 25 25 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47358 * 299.99668 * 1 2 3 27 27 H 1.09005 * 109.47081 * 59.99373 * 1 2 3 28 28 H 1.09001 * 109.47118 * 240.00780 * 2 1 3 29 29 H 1.08990 * 109.47511 * 120.00486 * 2 1 3 30 30 H 1.09002 * 109.47365 * 300.00040 * 6 4 3 31 31 H 1.09003 * 109.46816 * 59.99751 * 6 4 3 32 32 H 1.08998 * 109.46917 * 180.02562 * 6 4 3 33 33 H 0.97006 * 119.99642 * 359.97438 * 9 7 4 34 34 H 1.08999 * 109.45847 * 301.34859 * 12 10 9 35 35 H 1.09005 * 109.46173 * 61.32906 * 12 10 9 36 36 H 1.09000 * 109.49771 * 58.58941 * 13 12 10 37 37 H 1.09001 * 109.49807 * 178.65257 * 13 12 10 38 38 H 1.09009 * 109.73921 * 295.11846 * 14 13 12 39 39 H 1.08998 * 109.67025 * 174.55147 * 14 13 12 40 40 H 0.97004 * 119.99883 * 354.24672 * 19 18 16 41 41 H 1.09002 * 109.58562 * 173.64647 * 24 15 14 42 42 H 1.09000 * 109.58130 * 294.07139 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5131 6 6 3.9387 1.5006 1.4433 7 6 3.8347 2.7264 -0.7097 8 8 2.9864 3.5047 -1.0910 9 7 5.1386 2.9940 -0.9212 10 6 5.5312 4.2247 -1.6122 11 1 4.8454 5.0277 -1.3427 12 6 6.9546 4.6094 -1.2024 13 6 7.3529 5.9129 -1.8985 14 6 7.3283 5.7024 -3.4200 15 7 6.0025 5.1963 -3.8003 16 6 5.2667 5.8260 -4.7685 17 1 5.3963 6.8840 -4.9427 18 6 4.3543 5.1046 -5.5260 19 7 4.5155 3.8090 -5.6922 20 14 2.8975 5.9726 -6.3095 21 1 2.9434 7.4184 -5.9734 22 1 1.6351 5.3848 -5.7937 23 1 2.9556 5.8045 -7.7839 24 6 5.4836 3.9981 -3.1265 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.5060 2.3591 1.9569 31 1 3.6465 0.5847 1.9571 32 1 5.0252 1.5871 1.4437 33 1 5.8171 2.3715 -0.6159 34 1 6.9968 4.7472 -0.1220 35 1 7.6435 3.8168 -1.4947 36 1 6.6499 6.7002 -1.6263 37 1 8.3577 6.1990 -1.5877 38 1 8.0913 4.9774 -3.7037 39 1 7.5162 6.6501 -3.9246 40 1 5.3143 3.3726 -5.3568 41 1 4.4540 3.8211 -3.4374 42 1 6.0993 3.1372 -3.3868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265203929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:18 Heat of formation + Delta-G solvation = -72.651096 kcal Electronic energy + Delta-G solvation = -21855.644266 eV Core-core repulsion = 18643.052809 eV Total energy + Delta-G solvation = -3212.591457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81616 -38.11379 -37.04365 -34.25800 -32.97873 -32.32720 -30.34220 -29.77926 -28.65682 -25.10207 -24.56165 -22.84027 -22.09400 -21.83679 -20.00644 -19.33151 -17.36171 -17.04738 -16.95912 -15.81838 -15.27728 -14.91823 -14.31563 -14.17646 -14.03457 -13.58600 -13.40543 -13.24296 -13.07536 -12.63157 -12.55793 -12.38741 -12.18180 -12.04435 -11.92758 -11.45557 -11.12806 -11.06678 -10.83718 -10.59157 -10.34112 -10.22917 -10.00688 -9.87275 -9.81896 -9.35418 -9.14316 -8.62127 -8.28501 -6.83460 -6.00811 -3.17565 2.98675 3.05628 3.57841 3.65699 3.75599 3.96506 4.66596 4.73248 4.86300 4.94788 5.02250 5.15469 5.24763 5.26151 5.32676 5.37168 5.41091 5.54357 5.59928 5.62383 5.64389 5.82158 5.94461 5.96563 6.05361 6.07118 6.19547 6.32097 6.36500 6.57644 6.69669 6.78045 6.84842 7.02235 7.12073 7.31652 7.86544 8.08043 8.60655 8.65422 9.16158 9.90248 10.32949 11.27400 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.006087 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.066133 B = 4598.957550 C = 6028.861326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.071 3.929 5 H 0.084 0.916 6 C -0.167 4.167 7 C 0.509 3.491 8 O -0.508 6.508 9 N -0.722 5.722 10 C 0.125 3.875 11 H 0.085 0.915 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.144 3.856 15 N -0.595 5.595 16 C -0.353 4.353 17 H 0.057 0.943 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.067 2.933 21 H -0.291 1.291 22 H -0.288 1.288 23 H -0.294 1.294 24 C 0.146 3.854 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.392 0.608 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -7.899 14.636 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.010 3.990 5 H 0.101 0.899 6 C -0.225 4.225 7 C 0.292 3.708 8 O -0.382 6.382 9 N -0.375 5.375 10 C 0.019 3.981 11 H 0.103 0.897 12 C -0.153 4.153 13 C -0.171 4.171 14 C 0.018 3.982 15 N -0.319 5.319 16 C -0.482 4.482 17 H 0.075 0.925 18 C -0.222 4.222 19 N -0.553 5.553 20 Si 0.897 3.103 21 H -0.217 1.217 22 H -0.214 1.214 23 H -0.221 1.221 24 C 0.018 3.982 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.390 -7.354 13.434 15.320 hybrid contribution 2.024 -0.396 1.080 2.328 sum 1.634 -7.750 14.514 16.534 Atomic orbital electron populations 1.21725 0.93517 1.02032 1.03520 1.22574 0.95976 0.83774 0.99896 1.88077 1.18447 1.26040 1.94886 1.21893 0.83721 0.97009 0.96425 0.89866 1.22211 1.01506 1.03442 0.95354 1.20271 0.82994 0.87606 0.79881 1.90771 1.49910 1.48360 1.49113 1.46029 1.06581 1.24685 1.60225 1.21809 0.95351 0.85767 0.95139 0.89710 1.21668 0.95911 0.98624 0.99105 1.22071 0.99961 0.96576 0.98486 1.21037 0.87848 0.97620 0.91689 1.44064 1.14227 1.31675 1.41963 1.19988 1.21880 0.92852 1.13461 0.92479 1.25841 1.03075 0.96760 0.96500 1.70732 1.30274 1.10824 1.43453 0.83520 0.76569 0.74572 0.75665 1.21745 1.21448 1.22144 1.21277 1.00516 0.88755 0.87602 0.91170 0.91878 0.91435 0.93169 0.93491 0.91151 0.91530 0.91062 0.77542 0.92798 0.92272 0.91974 0.92521 0.96556 0.92444 0.92186 0.89525 0.96740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.62 6.47 37.16 0.24 0.86 16 3 O -0.36 -5.60 9.53 -55.09 -0.52 -6.12 16 4 C 0.07 0.98 3.13 -27.88 -0.09 0.89 16 5 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 6 C -0.17 -1.69 9.48 37.16 0.35 -1.33 16 7 C 0.51 9.30 7.14 -10.99 -0.08 9.22 16 8 O -0.51 -12.25 16.17 -14.30 -0.23 -12.48 16 9 N -0.72 -11.69 5.04 -53.69 -0.27 -11.96 16 10 C 0.12 2.44 2.60 -67.81 -0.18 2.27 16 11 H 0.08 1.93 7.58 -51.93 -0.39 1.54 16 12 C -0.11 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C -0.13 -2.24 6.10 -26.39 -0.16 -2.40 16 14 C 0.14 3.04 6.54 -3.49 -0.02 3.02 16 15 N -0.60 -15.39 2.85 -172.05 -0.49 -15.88 16 16 C -0.35 -10.27 9.49 -15.06 -0.14 -10.41 16 17 H 0.06 1.66 7.95 -52.48 -0.42 1.24 16 18 C -0.02 -0.58 4.68 -17.43 -0.08 -0.66 16 19 N -0.91 -28.52 12.40 55.49 0.69 -27.83 16 20 Si 1.07 27.03 29.99 -169.99 -5.10 21.93 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 C 0.15 3.56 4.27 -3.71 -0.02 3.54 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.05 0.42 7.87 -51.93 -0.41 0.01 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 33 H 0.39 4.73 8.39 -40.82 -0.34 4.39 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.27 8.35 6.72 -40.82 -0.27 8.08 16 41 H 0.09 2.53 6.29 -51.93 -0.33 2.20 16 42 H 0.01 0.36 7.87 -51.93 -0.41 -0.05 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -35.84 338.37 -7.99 -43.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.23 Total: 1.57 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 0.07 Total: 1.85 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.07 Total: -55.67 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.76 Total: -18.60 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -5.10 Total: 21.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.84 -7.99 -43.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.820 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds