Wall clock time and date at job start Mon Mar 30 2020 01:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46980 * 2 1 4 4 C 1.42898 * 113.99927 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46926 * 30.00644 * 4 3 2 6 6 C 1.53002 * 109.47335 * 270.00335 * 4 3 2 7 7 C 1.50702 * 109.47207 * 150.00715 * 4 3 2 8 8 O 1.21277 * 119.99749 * 4.99834 * 7 4 3 9 9 N 1.34774 * 120.00373 * 185.00318 * 7 4 3 10 10 C 1.46501 * 120.00321 * 179.97438 * 9 7 4 11 11 H 1.08993 * 109.49514 * 35.06126 * 10 9 7 12 12 C 1.53039 * 109.52231 * 155.14464 * 10 9 7 13 13 C 1.53041 * 109.53467 * 181.33108 * 12 10 9 14 14 C 1.53620 * 109.24426 * 298.51349 * 13 12 10 15 15 N 1.46922 * 108.54487 * 54.85211 * 14 13 12 16 16 C 1.36938 * 120.62815 * 126.37288 * 15 14 13 17 17 H 1.08008 * 120.00100 * 332.12129 * 16 15 14 18 18 C 1.38811 * 120.00277 * 152.12639 * 16 15 14 19 19 N 1.31619 * 119.99894 * 334.90869 * 18 16 15 20 20 Si 1.86798 * 120.00307 * 154.90583 * 18 16 15 21 21 H 1.48502 * 109.47164 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47179 * 239.99738 * 20 18 16 23 23 H 1.48506 * 109.46976 * 120.00189 * 20 18 16 24 24 C 1.46928 * 118.74141 * 306.09772 * 15 14 13 25 25 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47358 * 299.99668 * 1 2 3 27 27 H 1.09005 * 109.47081 * 59.99373 * 1 2 3 28 28 H 1.09001 * 109.47118 * 240.00780 * 2 1 3 29 29 H 1.08990 * 109.47511 * 120.00486 * 2 1 3 30 30 H 1.09002 * 109.47365 * 300.00040 * 6 4 3 31 31 H 1.09003 * 109.46816 * 59.99751 * 6 4 3 32 32 H 1.08998 * 109.46917 * 180.02562 * 6 4 3 33 33 H 0.97006 * 119.99642 * 359.97438 * 9 7 4 34 34 H 1.08999 * 109.45847 * 301.34859 * 12 10 9 35 35 H 1.09005 * 109.46173 * 61.32906 * 12 10 9 36 36 H 1.09000 * 109.49771 * 58.58941 * 13 12 10 37 37 H 1.09001 * 109.49807 * 178.65257 * 13 12 10 38 38 H 1.09009 * 109.73921 * 295.11846 * 14 13 12 39 39 H 1.08998 * 109.67025 * 174.55147 * 14 13 12 40 40 H 0.97004 * 119.99883 * 354.24672 * 19 18 16 41 41 H 1.09002 * 109.58562 * 173.64647 * 24 15 14 42 42 H 1.09000 * 109.58130 * 294.07139 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5131 6 6 3.9387 1.5006 1.4433 7 6 3.8347 2.7264 -0.7097 8 8 2.9864 3.5047 -1.0910 9 7 5.1386 2.9940 -0.9212 10 6 5.5312 4.2247 -1.6122 11 1 4.8454 5.0277 -1.3427 12 6 6.9546 4.6094 -1.2024 13 6 7.3529 5.9129 -1.8985 14 6 7.3283 5.7024 -3.4200 15 7 6.0025 5.1963 -3.8003 16 6 5.2667 5.8260 -4.7685 17 1 5.3963 6.8840 -4.9427 18 6 4.3543 5.1046 -5.5260 19 7 4.5155 3.8090 -5.6922 20 14 2.8975 5.9726 -6.3095 21 1 2.9434 7.4184 -5.9734 22 1 1.6351 5.3848 -5.7937 23 1 2.9556 5.8045 -7.7839 24 6 5.4836 3.9981 -3.1265 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.5060 2.3591 1.9569 31 1 3.6465 0.5847 1.9571 32 1 5.0252 1.5871 1.4437 33 1 5.8171 2.3715 -0.6159 34 1 6.9968 4.7472 -0.1220 35 1 7.6435 3.8168 -1.4947 36 1 6.6499 6.7002 -1.6263 37 1 8.3577 6.1990 -1.5877 38 1 8.0913 4.9774 -3.7037 39 1 7.5162 6.6501 -3.9246 40 1 5.3143 3.3726 -5.3568 41 1 4.4540 3.8211 -3.4374 42 1 6.0993 3.1372 -3.3868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265203929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:17 Heat of formation + Delta-G solvation = -98.445076 kcal Electronic energy + Delta-G solvation = -21856.762777 eV Core-core repulsion = 18643.052809 eV Total energy + Delta-G solvation = -3213.709968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.23757 -39.51268 -38.50567 -36.02883 -34.68969 -33.40224 -31.78457 -31.30962 -30.13157 -27.13403 -25.70440 -23.92663 -23.81072 -23.29038 -21.50232 -20.95338 -19.43867 -18.33984 -18.09673 -17.01638 -16.61745 -16.45945 -16.11026 -15.79920 -15.54061 -15.33256 -15.10491 -14.32296 -14.20267 -14.16937 -14.05315 -13.55960 -13.41168 -13.21458 -13.07906 -12.89382 -12.62103 -12.52594 -12.30211 -12.05803 -11.97653 -11.86624 -11.85640 -11.69217 -11.30843 -10.98186 -10.52363 -10.46708 -10.19736 -8.96281 -8.29539 -5.45085 1.48761 1.56138 1.60607 1.73488 1.83614 2.59128 2.89577 3.19008 3.51461 3.68955 3.83153 3.88801 4.00300 4.05144 4.13533 4.17587 4.30383 4.33564 4.41913 4.45616 4.60332 4.70034 4.76605 4.78161 4.86759 4.97912 4.99225 5.06419 5.09966 5.10841 5.18399 5.20109 5.24048 5.39708 5.53383 5.79715 6.12071 6.34375 6.58523 7.01602 7.27734 7.72888 8.16413 8.94523 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.006087 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.066133 B = 4598.957550 C = 6028.861326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.075 3.925 5 H 0.111 0.889 6 C -0.158 4.158 7 C 0.499 3.501 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.137 3.863 11 H 0.047 0.953 12 C -0.104 4.104 13 C -0.122 4.122 14 C 0.137 3.863 15 N -0.618 5.618 16 C -0.357 4.357 17 H 0.052 0.948 18 C -0.074 4.074 19 N -0.940 5.940 20 Si 1.109 2.891 21 H -0.271 1.271 22 H -0.299 1.299 23 H -0.280 1.280 24 C 0.157 3.843 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.254 0.746 41 H 0.029 0.971 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -8.913 16.997 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.317 6.317 4 C 0.014 3.986 5 H 0.129 0.871 6 C -0.215 4.215 7 C 0.285 3.715 8 O -0.458 6.458 9 N -0.357 5.357 10 C 0.030 3.970 11 H 0.065 0.935 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.012 3.988 15 N -0.343 5.343 16 C -0.487 4.487 17 H 0.070 0.930 18 C -0.271 4.271 19 N -0.582 5.582 20 Si 0.934 3.066 21 H -0.195 1.195 22 H -0.226 1.226 23 H -0.207 1.207 24 C 0.030 3.970 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 1.526 -8.391 15.837 17.987 hybrid contribution 1.489 -0.092 0.348 1.532 sum 3.015 -8.482 16.184 18.519 Atomic orbital electron populations 1.21779 0.93254 1.03552 1.02246 1.22848 0.96354 0.82211 1.01522 1.88041 1.19643 1.28782 1.95201 1.22034 0.83420 0.94728 0.98444 0.87137 1.22202 1.02896 1.04129 0.92315 1.21371 0.82703 0.88525 0.78863 1.90737 1.51862 1.51052 1.52123 1.45792 1.06939 1.24097 1.58920 1.21365 0.97479 0.86097 0.92023 0.93471 1.21644 0.92820 0.98530 1.01221 1.21973 1.02215 0.96899 0.95050 1.21275 0.85513 0.97207 0.94809 1.44324 1.16246 1.31864 1.41843 1.20244 1.22079 0.92837 1.13541 0.93003 1.27081 1.05509 0.96929 0.97573 1.70836 1.30108 1.11766 1.45477 0.82959 0.73241 0.74716 0.75651 1.19536 1.22611 1.20670 1.21034 0.96850 0.88299 0.90810 0.88216 0.91929 0.93932 0.92984 0.90191 0.92832 0.88771 0.88423 0.74541 0.88994 0.90081 0.93374 0.88078 0.95590 0.93071 0.93618 0.95279 0.97148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 10.28 71.98 0.74 -2.28 16 2 C 0.05 0.99 6.47 71.98 0.47 1.45 16 3 O -0.40 -12.39 9.53 -129.99 -1.24 -13.63 16 4 C 0.07 1.94 3.13 29.85 0.09 2.03 16 5 H 0.11 2.22 7.79 -2.39 -0.02 2.20 16 6 C -0.16 -2.66 9.48 71.98 0.68 -1.98 16 7 C 0.50 18.42 7.14 87.66 0.63 19.05 16 8 O -0.58 -29.56 16.17 15.97 0.26 -29.30 16 9 N -0.70 -22.00 5.04 -442.18 -2.23 -24.23 16 10 C 0.14 5.34 2.60 45.07 0.12 5.46 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.10 -2.95 5.35 30.62 0.16 -2.79 16 13 C -0.12 -3.81 6.10 30.82 0.19 -3.62 16 14 C 0.14 5.62 6.54 86.51 0.57 6.19 16 15 N -0.62 -32.63 2.85 -698.25 -1.99 -34.62 16 16 C -0.36 -21.44 9.49 84.03 0.80 -20.64 16 17 H 0.05 3.09 7.95 -2.91 -0.02 3.07 16 18 C -0.07 -4.57 4.68 84.86 0.40 -4.17 16 19 N -0.94 -61.24 12.40 21.65 0.27 -60.97 16 20 Si 1.11 56.30 29.99 68.60 2.06 58.36 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 C 0.16 7.93 4.27 86.36 0.37 8.30 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.08 1.16 7.87 -2.39 -0.02 1.15 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.11 7.87 -2.39 -0.02 1.09 16 32 H 0.10 1.12 7.92 -2.39 -0.02 1.10 16 33 H 0.42 8.73 8.39 -92.70 -0.78 7.95 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.05 2.12 7.93 -2.39 -0.02 2.11 16 40 H 0.25 16.64 6.72 -92.71 -0.62 16.02 16 41 H 0.03 1.79 6.29 -2.39 -0.02 1.77 16 42 H 0.01 0.53 7.87 -2.39 -0.02 0.51 16 Total: -1.00 -85.88 338.37 2.69 -83.19 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.36 Total: 14.21 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.21 Total: 6.99 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -3.95 Total: -119.81 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.98 Total: -42.93 kcal Atomic # 14 Polarization: 56.30 SS G_CDS: 2.06 Total: 58.36 kcal Total: -85.88 2.69 -83.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.257 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds