Wall clock time and date at job start Mon Mar 30 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47358 * 2 1 4 4 C 1.42897 * 114.00077 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47027 * 329.99793 * 4 3 2 6 6 C 1.52994 * 109.47455 * 89.99966 * 4 3 2 7 7 C 1.50703 * 109.47138 * 210.00505 * 4 3 2 8 8 O 1.21275 * 119.99557 * 354.99435 * 7 4 3 9 9 N 1.34780 * 119.99957 * 174.99887 * 7 4 3 10 10 C 1.46499 * 119.99662 * 179.97438 * 9 7 4 11 11 H 1.09005 * 109.49672 * 325.06264 * 10 9 7 12 12 C 1.53044 * 109.49461 * 205.00148 * 10 9 7 13 13 C 1.53038 * 109.53687 * 178.68293 * 12 10 9 14 14 C 1.53198 * 109.31405 * 61.36087 * 13 12 10 15 15 N 1.46925 * 108.77610 * 305.36854 * 14 13 12 16 16 C 1.36936 * 120.62705 * 233.62726 * 15 14 13 17 17 H 1.08004 * 119.99954 * 152.62499 * 16 15 14 18 18 C 1.38811 * 120.00065 * 332.61869 * 16 15 14 19 19 N 1.31624 * 119.99525 * 159.34472 * 18 16 15 20 20 Si 1.86795 * 120.00079 * 339.34762 * 18 16 15 21 21 H 1.48500 * 109.47301 * 92.96094 * 20 18 16 22 22 H 1.48502 * 109.47194 * 212.95979 * 20 18 16 23 23 H 1.48505 * 109.47167 * 332.95931 * 20 18 16 24 24 C 1.46929 * 118.73990 * 53.60662 * 15 14 13 25 25 H 1.08993 * 109.47093 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46986 * 299.99824 * 1 2 3 27 27 H 1.09006 * 109.46943 * 59.99565 * 1 2 3 28 28 H 1.09009 * 109.46813 * 240.00498 * 2 1 3 29 29 H 1.08997 * 109.47513 * 120.00579 * 2 1 3 30 30 H 1.09001 * 109.47144 * 59.99899 * 6 4 3 31 31 H 1.09003 * 109.47553 * 300.00548 * 6 4 3 32 32 H 1.09004 * 109.47333 * 179.97438 * 6 4 3 33 33 H 0.96998 * 119.99985 * 0.02562 * 9 7 4 34 34 H 1.08997 * 109.45872 * 298.70258 * 12 10 9 35 35 H 1.08993 * 109.45976 * 58.66588 * 12 10 9 36 36 H 1.08997 * 109.49982 * 181.31305 * 13 12 10 37 37 H 1.09004 * 109.50055 * 301.41310 * 13 12 10 38 38 H 1.09001 * 109.58175 * 65.15241 * 14 13 12 39 39 H 1.08994 * 109.58837 * 185.43612 * 14 13 12 40 40 H 0.97007 * 119.99020 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58675 * 186.60766 * 24 15 14 42 42 H 1.08991 * 109.58782 * 66.17693 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9388 1.5005 -1.4432 7 6 3.8349 2.7262 0.7100 8 8 2.9866 3.5045 1.0913 9 7 5.1389 2.9936 0.9215 10 6 5.5315 4.2247 1.6117 11 1 4.8444 5.0272 1.3433 12 6 6.9538 4.6104 1.1987 13 6 7.3528 5.9141 1.8939 14 6 7.3294 5.7067 3.4116 15 7 6.0072 5.1965 3.7988 16 6 5.2729 5.8262 4.7681 17 1 4.1949 5.7609 4.7567 18 6 5.9141 6.5483 5.7652 19 7 5.2555 7.4674 6.4392 20 14 7.7113 6.2159 6.1505 21 1 8.5657 7.1408 5.3632 22 1 7.9548 6.4301 7.5997 23 1 8.0425 4.8126 5.7950 24 6 5.4875 3.9980 3.1261 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.5061 2.3591 -1.9568 31 1 3.6466 0.5848 -1.9572 32 1 5.0254 1.5870 -1.4436 33 1 5.8173 2.3713 0.6160 34 1 7.6437 3.8181 1.4890 35 1 6.9933 4.7483 0.1182 36 1 8.3569 6.2005 1.5813 37 1 6.6487 6.7010 1.6234 38 1 8.0964 4.9853 3.6936 39 1 7.5184 6.6558 3.9130 40 1 5.7035 7.9717 7.1362 41 1 4.4587 3.8204 3.4392 42 1 6.1042 3.1374 3.3848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265203931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:21 Heat of formation + Delta-G solvation = -64.469352 kcal Electronic energy + Delta-G solvation = -21562.320494 eV Core-core repulsion = 18350.083824 eV Total energy + Delta-G solvation = -3212.236670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99710 -38.27136 -37.22494 -34.43131 -32.86880 -32.22560 -30.82353 -30.42683 -28.90132 -25.30904 -24.75188 -23.01165 -22.30406 -21.96207 -20.18160 -19.63898 -17.25463 -17.12481 -16.72672 -15.95956 -15.49949 -15.32754 -14.79033 -14.39053 -13.98349 -13.84116 -13.40149 -13.30775 -13.15095 -12.85939 -12.68745 -12.48811 -12.30246 -12.17792 -12.04951 -11.57579 -11.51755 -11.26182 -11.09581 -10.89505 -10.74861 -10.15345 -10.03081 -9.93847 -9.72914 -9.48168 -9.33915 -8.96284 -8.50008 -6.94803 -5.90102 -3.26683 2.79161 2.88953 3.33135 3.49662 3.52610 3.81273 4.55773 4.58132 4.72430 4.78986 4.89542 5.01939 5.04415 5.13271 5.16591 5.24068 5.29009 5.43071 5.45512 5.52003 5.53845 5.70415 5.82297 5.84962 5.95249 5.95595 6.04121 6.20184 6.31266 6.43069 6.54850 6.62947 6.65999 6.79374 6.90420 6.99509 7.68590 8.00306 8.37916 8.44209 8.98623 9.75911 10.11489 11.25931 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.004368 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.327654 B = 6408.809624 C = 7064.792226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.071 3.929 5 H 0.084 0.916 6 C -0.169 4.169 7 C 0.509 3.491 8 O -0.510 6.510 9 N -0.723 5.723 10 C 0.126 3.874 11 H 0.091 0.909 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.122 3.878 15 N -0.601 5.601 16 C -0.259 4.259 17 H 0.087 0.913 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.272 1.272 24 C 0.144 3.856 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.394 0.606 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -15.761 -16.582 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.009 3.991 5 H 0.102 0.898 6 C -0.226 4.226 7 C 0.293 3.707 8 O -0.384 6.384 9 N -0.376 5.376 10 C 0.021 3.979 11 H 0.109 0.891 12 C -0.153 4.153 13 C -0.172 4.172 14 C -0.004 4.004 15 N -0.325 5.325 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.017 3.983 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.227 0.773 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.075 -14.896 -16.135 21.960 hybrid contribution 1.593 -0.706 0.154 1.749 sum 1.668 -15.601 -15.981 22.396 Atomic orbital electron populations 1.21727 0.93458 1.02097 1.03556 1.22583 0.96008 0.83692 0.99921 1.88082 1.18409 1.26101 1.94899 1.21894 0.83756 0.96852 0.96557 0.89836 1.22217 1.01573 1.03574 0.95270 1.20307 0.82955 0.87608 0.79816 1.90774 1.49956 1.48325 1.49305 1.46031 1.06648 1.24660 1.60234 1.21704 0.96057 0.85873 0.94290 0.89130 1.21673 0.95480 0.98725 0.99451 1.22003 1.00543 0.96713 0.97928 1.21397 0.87771 0.98434 0.92766 1.44288 1.17408 1.28144 1.42670 1.18970 0.91463 1.26209 1.02063 0.89555 1.25266 0.97523 0.97844 0.96899 1.69856 1.37046 1.22538 1.25614 0.86942 0.86667 0.78768 0.76236 1.21621 1.23174 1.19667 1.21219 0.98890 0.88907 0.89275 0.91129 0.91475 0.91800 0.93407 0.93224 0.91064 0.91471 0.90990 0.77289 0.92116 0.92418 0.92231 0.91361 0.95683 0.90752 0.92790 0.91444 0.96018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.52 6.47 37.16 0.24 0.76 16 3 O -0.36 -4.82 9.53 -55.09 -0.52 -5.35 16 4 C 0.07 0.81 3.13 -27.88 -0.09 0.72 16 5 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 6 C -0.17 -1.41 9.48 37.15 0.35 -1.06 16 7 C 0.51 7.89 7.15 -10.98 -0.08 7.81 16 8 O -0.51 -10.78 16.17 -14.30 -0.23 -11.01 16 9 N -0.72 -9.72 5.04 -53.69 -0.27 -9.99 16 10 C 0.13 2.16 2.60 -67.81 -0.18 1.98 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.12 -1.68 5.35 -26.69 -0.14 -1.82 16 13 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 14 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 15 N -0.60 -14.74 2.77 -172.32 -0.48 -15.22 16 16 C -0.26 -7.54 10.04 -15.06 -0.15 -7.69 16 17 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -28.53 13.97 55.49 0.78 -27.76 16 20 Si 0.88 22.62 24.35 -169.99 -4.14 18.48 16 21 H -0.29 -7.06 6.62 56.52 0.37 -6.68 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 23 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 24 C 0.14 3.02 6.09 -3.71 -0.02 2.99 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.35 7.87 -51.92 -0.41 -0.06 16 29 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 33 H 0.39 3.75 8.38 -40.82 -0.34 3.41 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 39 H 0.07 1.78 4.50 -51.93 -0.23 1.54 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -35.40 332.94 -7.02 -42.42 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.22 Total: -0.14 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.05 Total: 3.56 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.03 Total: -52.97 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.76 Total: -16.36 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.40 -7.02 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.051 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds