Wall clock time and date at job start Mon Mar 30 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47358 * 2 1 4 4 C 1.42897 * 114.00077 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47027 * 329.99793 * 4 3 2 6 6 C 1.52994 * 109.47455 * 89.99966 * 4 3 2 7 7 C 1.50703 * 109.47138 * 210.00505 * 4 3 2 8 8 O 1.21275 * 119.99557 * 354.99435 * 7 4 3 9 9 N 1.34780 * 119.99957 * 174.99887 * 7 4 3 10 10 C 1.46499 * 119.99662 * 179.97438 * 9 7 4 11 11 H 1.09005 * 109.49672 * 325.06264 * 10 9 7 12 12 C 1.53044 * 109.49461 * 205.00148 * 10 9 7 13 13 C 1.53038 * 109.53687 * 178.68293 * 12 10 9 14 14 C 1.53198 * 109.31405 * 61.36087 * 13 12 10 15 15 N 1.46925 * 108.77610 * 305.36854 * 14 13 12 16 16 C 1.36936 * 120.62705 * 233.62726 * 15 14 13 17 17 H 1.08004 * 119.99954 * 152.62499 * 16 15 14 18 18 C 1.38811 * 120.00065 * 332.61869 * 16 15 14 19 19 N 1.31624 * 119.99525 * 159.34472 * 18 16 15 20 20 Si 1.86795 * 120.00079 * 339.34762 * 18 16 15 21 21 H 1.48500 * 109.47301 * 92.96094 * 20 18 16 22 22 H 1.48502 * 109.47194 * 212.95979 * 20 18 16 23 23 H 1.48505 * 109.47167 * 332.95931 * 20 18 16 24 24 C 1.46929 * 118.73990 * 53.60662 * 15 14 13 25 25 H 1.08993 * 109.47093 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46986 * 299.99824 * 1 2 3 27 27 H 1.09006 * 109.46943 * 59.99565 * 1 2 3 28 28 H 1.09009 * 109.46813 * 240.00498 * 2 1 3 29 29 H 1.08997 * 109.47513 * 120.00579 * 2 1 3 30 30 H 1.09001 * 109.47144 * 59.99899 * 6 4 3 31 31 H 1.09003 * 109.47553 * 300.00548 * 6 4 3 32 32 H 1.09004 * 109.47333 * 179.97438 * 6 4 3 33 33 H 0.96998 * 119.99985 * 0.02562 * 9 7 4 34 34 H 1.08997 * 109.45872 * 298.70258 * 12 10 9 35 35 H 1.08993 * 109.45976 * 58.66588 * 12 10 9 36 36 H 1.08997 * 109.49982 * 181.31305 * 13 12 10 37 37 H 1.09004 * 109.50055 * 301.41310 * 13 12 10 38 38 H 1.09001 * 109.58175 * 65.15241 * 14 13 12 39 39 H 1.08994 * 109.58837 * 185.43612 * 14 13 12 40 40 H 0.97007 * 119.99020 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58675 * 186.60766 * 24 15 14 42 42 H 1.08991 * 109.58782 * 66.17693 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9388 1.5005 -1.4432 7 6 3.8349 2.7262 0.7100 8 8 2.9866 3.5045 1.0913 9 7 5.1389 2.9936 0.9215 10 6 5.5315 4.2247 1.6117 11 1 4.8444 5.0272 1.3433 12 6 6.9538 4.6104 1.1987 13 6 7.3528 5.9141 1.8939 14 6 7.3294 5.7067 3.4116 15 7 6.0072 5.1965 3.7988 16 6 5.2729 5.8262 4.7681 17 1 4.1949 5.7609 4.7567 18 6 5.9141 6.5483 5.7652 19 7 5.2555 7.4674 6.4392 20 14 7.7113 6.2159 6.1505 21 1 8.5657 7.1408 5.3632 22 1 7.9548 6.4301 7.5997 23 1 8.0425 4.8126 5.7950 24 6 5.4875 3.9980 3.1261 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.5061 2.3591 -1.9568 31 1 3.6466 0.5848 -1.9572 32 1 5.0254 1.5870 -1.4436 33 1 5.8173 2.3713 0.6160 34 1 7.6437 3.8181 1.4890 35 1 6.9933 4.7483 0.1182 36 1 8.3569 6.2005 1.5813 37 1 6.6487 6.7010 1.6234 38 1 8.0964 4.9853 3.6936 39 1 7.5184 6.6558 3.9130 40 1 5.7035 7.9717 7.1362 41 1 4.4587 3.8204 3.4392 42 1 6.1042 3.1374 3.3848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265203931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:21 Heat of formation + Delta-G solvation = -91.456373 kcal Electronic energy + Delta-G solvation = -21563.490739 eV Core-core repulsion = 18350.083824 eV Total energy + Delta-G solvation = -3213.406915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22109 -39.53078 -38.51026 -36.01171 -34.41754 -33.34128 -32.68629 -31.36993 -30.19992 -27.24227 -25.75419 -24.01106 -23.75188 -23.42407 -21.47655 -21.11752 -18.81010 -18.32335 -18.05373 -17.33037 -16.95143 -16.48735 -16.16838 -15.78437 -15.52329 -15.29629 -14.94226 -14.59487 -14.24782 -14.16690 -14.00640 -13.75793 -13.37118 -13.32006 -13.18551 -12.86692 -12.81069 -12.60045 -12.44665 -12.27970 -12.01963 -11.84104 -11.66277 -11.49474 -11.36551 -10.98154 -10.81066 -10.43371 -10.17412 -8.94490 -8.19383 -5.53712 1.29345 1.41258 1.52073 1.59205 1.84437 2.40240 2.90245 3.04869 3.34684 3.68860 3.84242 3.93075 4.01348 4.07426 4.10107 4.20598 4.31584 4.33971 4.41889 4.48951 4.63463 4.64975 4.69928 4.81442 4.89638 4.91817 4.99656 5.01677 5.04138 5.09663 5.20848 5.22730 5.26490 5.37603 5.53962 5.82272 6.08454 6.15783 6.62409 6.88069 7.30580 7.58105 7.95398 9.01295 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.004368 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.327654 B = 6408.809624 C = 7064.792226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.075 3.925 5 H 0.118 0.882 6 C -0.161 4.161 7 C 0.501 3.499 8 O -0.581 6.581 9 N -0.700 5.700 10 C 0.137 3.863 11 H 0.047 0.953 12 C -0.104 4.104 13 C -0.128 4.128 14 C 0.112 3.888 15 N -0.618 5.618 16 C -0.260 4.260 17 H 0.031 0.969 18 C -0.038 4.038 19 N -0.961 5.961 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.310 1.310 23 H -0.255 1.255 24 C 0.145 3.855 25 H 0.098 0.902 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.420 0.580 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.024 0.976 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -18.674 -19.127 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.318 6.318 4 C 0.014 3.986 5 H 0.135 0.865 6 C -0.219 4.219 7 C 0.288 3.712 8 O -0.459 6.459 9 N -0.355 5.355 10 C 0.031 3.969 11 H 0.066 0.934 12 C -0.141 4.141 13 C -0.167 4.167 14 C -0.012 4.012 15 N -0.343 5.343 16 C -0.390 4.390 17 H 0.049 0.951 18 C -0.232 4.232 19 N -0.607 5.607 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.239 1.239 23 H -0.179 1.179 24 C 0.018 3.982 25 H 0.116 0.884 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.258 0.742 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.904 -17.877 -18.753 26.201 hybrid contribution 0.270 0.182 0.930 0.985 sum 4.174 -17.696 -17.823 25.460 Atomic orbital electron populations 1.21782 0.93519 1.03458 1.02217 1.22834 0.96129 0.82229 1.01636 1.88049 1.19778 1.28729 1.95199 1.22041 0.83332 0.95009 0.98240 0.86465 1.22220 1.03008 1.03927 0.92708 1.21330 0.82689 0.88399 0.78780 1.90752 1.51949 1.50961 1.52264 1.45743 1.06935 1.23876 1.58927 1.21265 0.97550 0.86264 0.91837 0.93429 1.21641 0.93159 0.98081 1.01257 1.21938 1.02442 0.97712 0.94605 1.21572 0.86192 0.97497 0.95897 1.44353 1.18382 1.29293 1.42261 1.18775 0.89802 1.26522 1.03868 0.95102 1.26034 1.03232 0.97306 0.96631 1.70018 1.39740 1.24099 1.26794 0.85680 0.80189 0.79673 0.75493 1.19129 1.23899 1.17884 1.21286 0.96706 0.88490 0.91687 0.88379 0.93710 0.92262 0.90499 0.92450 0.93149 0.89011 0.88280 0.74163 0.88957 0.88879 0.88139 0.93593 0.93499 0.93272 0.92760 0.95735 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 0.81 6.47 71.98 0.47 1.28 16 3 O -0.40 -10.56 9.53 -129.99 -1.24 -11.80 16 4 C 0.07 1.54 3.13 29.85 0.09 1.63 16 5 H 0.12 1.60 7.79 -2.39 -0.02 1.58 16 6 C -0.16 -2.14 9.48 71.98 0.68 -1.46 16 7 C 0.50 15.41 7.15 87.66 0.63 16.03 16 8 O -0.58 -26.12 16.17 15.98 0.26 -25.86 16 9 N -0.70 -17.33 5.04 -442.15 -2.23 -19.56 16 10 C 0.14 4.57 2.60 45.07 0.12 4.69 16 11 H 0.05 2.02 7.58 -2.38 -0.02 2.00 16 12 C -0.10 -2.55 5.35 30.62 0.16 -2.39 16 13 C -0.13 -3.95 6.08 30.67 0.19 -3.77 16 14 C 0.11 4.63 4.20 86.36 0.36 5.00 16 15 N -0.62 -30.71 2.77 -699.10 -1.94 -32.65 16 16 C -0.26 -16.04 10.04 84.03 0.84 -15.19 16 17 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 18 C -0.04 -2.30 5.23 84.86 0.44 -1.86 16 19 N -0.96 -63.37 13.97 21.65 0.30 -63.07 16 20 Si 0.96 47.15 24.35 68.60 1.67 48.82 16 21 H -0.27 -11.93 6.62 99.48 0.66 -11.27 16 22 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 23 H -0.25 -11.66 6.64 99.48 0.66 -11.00 16 24 C 0.14 6.11 6.09 86.36 0.53 6.63 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 28 H 0.08 0.86 7.87 -2.38 -0.02 0.84 16 29 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.81 7.87 -2.39 -0.02 0.79 16 32 H 0.10 0.76 7.92 -2.38 -0.02 0.75 16 33 H 0.42 6.03 8.38 -92.71 -0.78 5.25 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.05 1.76 7.08 -2.39 -0.02 1.74 16 39 H 0.05 2.26 4.50 -2.39 -0.01 2.25 16 40 H 0.26 16.29 8.31 -92.70 -0.77 15.52 16 41 H 0.02 1.20 7.93 -2.39 -0.02 1.19 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -86.60 332.94 2.20 -84.40 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.12 Total: 10.91 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.25 Total: 8.81 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.86 Total: -115.28 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.98 Total: -37.66 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -86.60 2.20 -84.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.057 kcal (2) G-P(sol) polarization free energy of solvation -86.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds