Wall clock time and date at job start Mon Mar 30 2020 01:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99834 * 2 1 4 4 H 1.08997 * 110.67501 * 31.77893 * 3 2 1 5 5 C 1.54896 * 110.75524 * 268.54705 * 3 2 1 6 6 C 1.54263 * 104.19547 * 203.74827 * 5 3 2 7 7 C 1.53874 * 106.60151 * 23.60381 * 6 5 3 8 8 C 1.54269 * 106.63895 * 359.97438 * 7 6 5 9 9 H 1.09008 * 110.48331 * 95.09011 * 8 7 6 10 10 C 1.50698 * 110.48412 * 217.73350 * 8 7 6 11 11 O 1.21276 * 119.99994 * 118.54836 * 10 8 7 12 12 N 1.34776 * 120.00127 * 298.54365 * 10 8 7 13 13 C 1.46499 * 120.00241 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47244 * 180.02562 * 13 12 10 15 15 N 1.46501 * 109.46795 * 180.02562 * 14 13 12 16 16 C 1.46505 * 119.99637 * 269.99394 * 15 14 13 17 17 C 1.36934 * 120.00597 * 90.00383 * 15 14 13 18 18 H 1.07999 * 119.99801 * 22.33111 * 17 15 14 19 19 C 1.38809 * 120.00046 * 202.33977 * 17 15 14 20 20 N 1.31617 * 120.00179 * 11.35491 * 19 17 15 21 21 Si 1.86796 * 119.99876 * 191.34929 * 19 17 15 22 22 H 1.48499 * 109.47562 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47187 * 120.00372 * 21 19 17 24 24 H 1.48506 * 109.47094 * 239.99899 * 21 19 17 25 25 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46893 * 300.00197 * 1 2 3 27 27 H 1.08999 * 109.47599 * 59.99947 * 1 2 3 28 28 H 1.08998 * 110.48460 * 85.06584 * 5 3 2 29 29 H 1.09003 * 110.48429 * 322.41892 * 5 3 2 30 30 H 1.09010 * 110.02941 * 264.32343 * 6 5 3 31 31 H 1.09000 * 110.03717 * 142.89579 * 6 5 3 32 32 H 1.09001 * 110.02800 * 119.28749 * 7 6 5 33 33 H 1.08998 * 110.03452 * 240.66853 * 7 6 5 34 34 H 0.97003 * 119.99697 * 0.02562 * 12 10 8 35 35 H 1.08995 * 109.46891 * 300.00321 * 13 12 10 36 36 H 1.09008 * 109.46837 * 60.00123 * 13 12 10 37 37 H 1.09001 * 109.46905 * 299.99987 * 14 13 12 38 38 H 1.08991 * 109.46991 * 60.00145 * 14 13 12 39 39 H 1.09006 * 109.46478 * 94.21067 * 16 15 14 40 40 H 1.08994 * 109.47170 * 214.21408 * 16 15 14 41 41 H 1.09003 * 109.47241 * 334.21486 * 16 15 14 42 42 H 0.96993 * 120.00409 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3747 2.0096 0.5371 5 6 2.2670 1.7920 -1.4480 6 6 3.3891 2.8404 -1.3014 7 6 4.1316 2.5099 0.0053 8 6 3.4350 1.2726 0.6083 9 1 3.9544 0.3608 0.3134 10 6 3.3713 1.3828 2.1099 11 8 2.2965 1.4106 2.6709 12 7 4.5089 1.4504 2.8295 13 6 4.4471 1.5570 4.2893 14 6 5.8666 1.6177 4.8568 15 7 5.8047 1.7237 6.3167 16 6 5.7567 3.0420 6.9540 17 6 5.7918 0.5907 7.0856 18 1 6.1793 -0.3358 6.6884 19 6 5.2806 0.6330 8.3754 20 7 4.6090 1.6891 8.7829 21 14 5.5456 -0.8090 9.5329 22 1 6.3264 -1.8642 8.8385 23 1 6.2914 -0.3505 10.7323 24 1 4.2300 -1.3586 9.9483 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.3685 2.2501 -1.8614 29 1 2.5979 0.9644 -2.0754 30 1 2.9602 3.8409 -1.2443 31 1 4.0740 2.7750 -2.1468 32 1 5.1768 2.2841 -0.2061 33 1 4.0637 3.3503 0.6961 34 1 5.3686 1.4285 2.3808 35 1 3.9069 2.4627 4.5649 36 1 3.9299 0.6876 4.6955 37 1 6.4071 0.7122 4.5812 38 1 6.3834 2.4872 4.4507 39 1 4.7186 3.3191 7.1377 40 1 6.2967 3.0080 7.9002 41 1 6.2191 3.7797 6.2982 42 1 4.2515 1.7185 9.6840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266290934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:14 Heat of formation + Delta-G solvation = -71.553020 kcal Electronic energy + Delta-G solvation = -21139.956418 eV Core-core repulsion = 17927.412577 eV Total energy + Delta-G solvation = -3212.543841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09195 -38.11527 -36.09532 -35.88622 -34.05753 -31.35879 -29.80395 -28.44975 -27.65992 -26.13449 -25.84393 -23.42687 -21.63139 -20.75145 -20.59075 -19.60943 -17.45156 -16.85671 -16.68288 -15.75039 -15.18395 -14.98687 -14.74098 -14.70149 -14.55398 -13.77709 -13.57559 -13.31239 -13.20265 -12.74272 -12.37054 -12.29718 -12.08754 -11.66589 -11.44295 -11.40020 -11.18436 -10.87079 -10.83202 -10.76643 -10.71912 -10.58262 -10.25376 -9.96328 -9.88806 -9.59434 -9.44526 -8.59941 -8.53208 -6.81021 -5.73523 -3.20634 2.94810 3.37807 3.43635 3.46647 3.48680 3.75527 4.24394 4.42543 4.52209 4.69098 5.06956 5.13458 5.17644 5.23513 5.29013 5.33219 5.40781 5.42186 5.49940 5.64156 5.65819 5.65945 5.76310 5.84629 5.89482 5.93994 6.00681 6.05723 6.29674 6.71354 6.74381 6.78632 7.02107 7.16402 7.37394 7.72686 7.81333 7.87934 8.37994 8.58373 9.22125 9.84175 10.32215 11.31696 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.003710 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.751446 B = 7544.504303 C = 8130.174896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.103 3.897 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.112 4.112 9 H 0.109 0.891 10 C 0.515 3.485 11 O -0.541 6.541 12 N -0.724 5.724 13 C 0.095 3.905 14 C 0.144 3.856 15 N -0.597 5.597 16 C 0.163 3.837 17 C -0.259 4.259 18 H 0.071 0.929 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.047 0.953 41 H -0.003 1.003 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 2.049 -21.161 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C 0.044 3.956 4 H 0.099 0.901 5 C -0.185 4.185 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.134 4.134 9 H 0.127 0.873 10 C 0.300 3.700 11 O -0.418 6.418 12 N -0.375 5.375 13 C -0.031 4.031 14 C 0.016 3.984 15 N -0.320 5.320 16 C 0.018 3.982 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.227 0.773 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.549 1.953 -20.514 20.764 hybrid contribution 0.115 -0.578 0.538 0.797 sum -2.434 1.376 -19.976 20.171 Atomic orbital electron populations 1.22735 0.81017 1.02532 0.99950 1.87854 1.19797 1.27153 1.94806 1.22929 0.93123 0.85333 0.94217 0.90138 1.22864 0.98957 0.99198 0.97530 1.22019 0.97310 0.99019 0.97424 1.22073 0.99612 0.96546 0.97010 1.22235 0.97606 1.01130 0.92438 0.87322 1.20353 0.84455 0.76361 0.88814 1.90694 1.28870 1.49638 1.72564 1.46179 1.08024 1.74401 1.08902 1.22496 1.02071 1.02128 0.76398 1.20991 0.92461 0.99059 0.85911 1.43936 1.85638 1.03578 0.98809 1.20844 0.99306 0.83249 0.94790 1.19276 1.34428 0.89681 0.95510 0.91152 1.25063 0.97836 0.97595 0.99026 1.70076 1.37987 1.29082 1.17946 0.86153 0.77450 0.81858 0.80889 1.20266 1.21575 1.21633 0.89874 0.93518 0.94475 0.91374 0.90498 0.91409 0.91166 0.90407 0.90836 0.77256 0.92334 0.91420 0.93345 0.94015 0.95265 0.93426 0.98408 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.88 101.05 1.10 1.48 16 2 O -0.38 -5.18 10.49 -35.23 -0.37 -5.55 16 3 C 0.10 1.26 2.35 -24.70 -0.06 1.20 16 4 H 0.08 1.10 7.27 -51.93 -0.38 0.72 16 5 C -0.15 -1.32 6.55 -25.07 -0.16 -1.48 16 6 C -0.12 -0.93 6.80 -25.61 -0.17 -1.10 16 7 C -0.11 -1.02 6.29 -25.61 -0.16 -1.18 16 8 C -0.11 -1.35 2.98 -90.08 -0.27 -1.61 16 9 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 10 C 0.52 8.41 7.02 -10.99 -0.08 8.33 16 11 O -0.54 -11.32 15.77 5.56 0.09 -11.24 16 12 N -0.72 -11.18 5.49 -60.29 -0.33 -11.51 16 13 C 0.09 1.89 6.00 -4.04 -0.02 1.86 16 14 C 0.14 2.88 5.82 -4.04 -0.02 2.86 16 15 N -0.60 -15.09 2.93 -181.12 -0.53 -15.62 16 16 C 0.16 4.04 9.01 59.85 0.54 4.58 16 17 C -0.26 -7.19 9.67 -15.06 -0.15 -7.33 16 18 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 19 C 0.00 0.09 5.13 -17.43 -0.09 0.01 16 20 N -0.91 -26.78 10.59 55.49 0.59 -26.20 16 21 Si 0.91 22.11 29.57 -169.99 -5.03 17.09 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 34 H 0.39 4.67 8.45 -40.82 -0.35 4.32 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.59 8.14 -51.92 -0.42 1.16 16 37 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 38 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 39 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 40 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 41 H 0.00 -0.06 7.85 -51.93 -0.41 -0.46 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -33.36 342.25 -7.29 -40.65 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.32 Total: -0.38 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 0.45 Total: 7.60 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.27 Total: -53.32 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.28 Total: -16.79 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.36 -7.29 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266290934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds