Wall clock time and date at job start Mon Mar 30 2020 01:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99834 * 2 1 4 4 H 1.08997 * 110.67501 * 31.77893 * 3 2 1 5 5 C 1.54896 * 110.75524 * 268.54705 * 3 2 1 6 6 C 1.54263 * 104.19547 * 203.74827 * 5 3 2 7 7 C 1.53874 * 106.60151 * 23.60381 * 6 5 3 8 8 C 1.54269 * 106.63895 * 359.97438 * 7 6 5 9 9 H 1.09008 * 110.48331 * 95.09011 * 8 7 6 10 10 C 1.50698 * 110.48412 * 217.73350 * 8 7 6 11 11 O 1.21276 * 119.99994 * 118.54836 * 10 8 7 12 12 N 1.34776 * 120.00127 * 298.54365 * 10 8 7 13 13 C 1.46499 * 120.00241 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47244 * 180.02562 * 13 12 10 15 15 N 1.46501 * 109.46795 * 180.02562 * 14 13 12 16 16 C 1.46505 * 119.99637 * 269.99394 * 15 14 13 17 17 C 1.36934 * 120.00597 * 90.00383 * 15 14 13 18 18 H 1.07999 * 119.99801 * 22.33111 * 17 15 14 19 19 C 1.38809 * 120.00046 * 202.33977 * 17 15 14 20 20 N 1.31617 * 120.00179 * 11.35491 * 19 17 15 21 21 Si 1.86796 * 119.99876 * 191.34929 * 19 17 15 22 22 H 1.48499 * 109.47562 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47187 * 120.00372 * 21 19 17 24 24 H 1.48506 * 109.47094 * 239.99899 * 21 19 17 25 25 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46893 * 300.00197 * 1 2 3 27 27 H 1.08999 * 109.47599 * 59.99947 * 1 2 3 28 28 H 1.08998 * 110.48460 * 85.06584 * 5 3 2 29 29 H 1.09003 * 110.48429 * 322.41892 * 5 3 2 30 30 H 1.09010 * 110.02941 * 264.32343 * 6 5 3 31 31 H 1.09000 * 110.03717 * 142.89579 * 6 5 3 32 32 H 1.09001 * 110.02800 * 119.28749 * 7 6 5 33 33 H 1.08998 * 110.03452 * 240.66853 * 7 6 5 34 34 H 0.97003 * 119.99697 * 0.02562 * 12 10 8 35 35 H 1.08995 * 109.46891 * 300.00321 * 13 12 10 36 36 H 1.09008 * 109.46837 * 60.00123 * 13 12 10 37 37 H 1.09001 * 109.46905 * 299.99987 * 14 13 12 38 38 H 1.08991 * 109.46991 * 60.00145 * 14 13 12 39 39 H 1.09006 * 109.46478 * 94.21067 * 16 15 14 40 40 H 1.08994 * 109.47170 * 214.21408 * 16 15 14 41 41 H 1.09003 * 109.47241 * 334.21486 * 16 15 14 42 42 H 0.96993 * 120.00409 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3747 2.0096 0.5371 5 6 2.2670 1.7920 -1.4480 6 6 3.3891 2.8404 -1.3014 7 6 4.1316 2.5099 0.0053 8 6 3.4350 1.2726 0.6083 9 1 3.9544 0.3608 0.3134 10 6 3.3713 1.3828 2.1099 11 8 2.2965 1.4106 2.6709 12 7 4.5089 1.4504 2.8295 13 6 4.4471 1.5570 4.2893 14 6 5.8666 1.6177 4.8568 15 7 5.8047 1.7237 6.3167 16 6 5.7567 3.0420 6.9540 17 6 5.7918 0.5907 7.0856 18 1 6.1793 -0.3358 6.6884 19 6 5.2806 0.6330 8.3754 20 7 4.6090 1.6891 8.7829 21 14 5.5456 -0.8090 9.5329 22 1 6.3264 -1.8642 8.8385 23 1 6.2914 -0.3505 10.7323 24 1 4.2300 -1.3586 9.9483 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.3685 2.2501 -1.8614 29 1 2.5979 0.9644 -2.0754 30 1 2.9602 3.8409 -1.2443 31 1 4.0740 2.7750 -2.1468 32 1 5.1768 2.2841 -0.2061 33 1 4.0637 3.3503 0.6961 34 1 5.3686 1.4285 2.3808 35 1 3.9069 2.4627 4.5649 36 1 3.9299 0.6876 4.6955 37 1 6.4071 0.7122 4.5812 38 1 6.3834 2.4872 4.4507 39 1 4.7186 3.3191 7.1377 40 1 6.2967 3.0080 7.9002 41 1 6.2191 3.7797 6.2982 42 1 4.2515 1.7185 9.6840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266290934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:13 Heat of formation + Delta-G solvation = -95.231986 kcal Electronic energy + Delta-G solvation = -21140.983215 eV Core-core repulsion = 17927.412577 eV Total energy + Delta-G solvation = -3213.570638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25944 -39.24556 -37.82586 -36.86775 -35.70284 -33.30785 -30.98592 -29.34663 -29.04115 -27.93197 -27.01856 -25.14645 -22.85816 -22.38843 -21.46517 -20.81391 -18.83038 -18.49142 -17.79587 -17.16556 -16.70072 -16.41517 -16.10121 -15.81081 -15.63380 -15.40171 -15.00766 -14.60828 -14.42137 -14.16154 -14.07386 -13.46863 -13.17682 -13.06237 -12.82997 -12.66323 -12.53169 -12.43825 -12.27819 -12.11697 -12.05486 -12.02916 -11.76268 -11.64076 -11.39172 -10.81537 -10.68759 -10.49921 -10.07510 -8.87808 -7.86674 -5.36244 1.45093 1.46198 1.56781 1.64349 2.16082 2.51032 2.82577 3.29103 3.38044 3.57692 3.78485 3.91451 4.20342 4.22288 4.27297 4.35529 4.39107 4.44503 4.49167 4.53074 4.62436 4.64914 4.69590 4.81009 4.83520 5.00828 5.05206 5.06531 5.13947 5.18415 5.24924 5.31228 5.41427 5.47888 5.61790 5.70919 6.24790 6.29641 6.61236 7.11355 7.30476 7.82157 8.24231 9.17326 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.003710 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.751446 B = 7544.504303 C = 8130.174896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.401 6.401 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.106 4.106 9 H 0.125 0.875 10 C 0.510 3.490 11 O -0.594 6.594 12 N -0.708 5.708 13 C 0.116 3.884 14 C 0.147 3.853 15 N -0.616 5.616 16 C 0.175 3.825 17 C -0.267 4.267 18 H 0.076 0.924 19 C -0.055 4.055 20 N -0.940 5.940 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.296 1.296 25 H 0.096 0.904 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.417 0.583 35 H 0.032 0.968 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.077 0.923 39 H -0.003 1.003 40 H 0.022 0.978 41 H 0.037 0.963 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 1.764 -23.917 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.321 6.321 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.175 4.175 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.127 4.127 9 H 0.143 0.857 10 C 0.297 3.703 11 O -0.475 6.475 12 N -0.360 5.360 13 C -0.011 4.011 14 C 0.020 3.980 15 N -0.338 5.338 16 C 0.030 3.970 17 C -0.397 4.397 18 H 0.094 0.906 19 C -0.250 4.250 20 N -0.587 5.587 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.214 1.214 24 H -0.223 1.223 25 H 0.114 0.886 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.254 0.746 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.015 0.985 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.713 1.663 -23.336 23.406 hybrid contribution -0.471 -0.482 1.324 1.485 sum -1.183 1.182 -22.012 22.076 Atomic orbital electron populations 1.22849 0.80032 1.03497 1.00147 1.87801 1.21048 1.28139 1.95061 1.23090 0.92700 0.84448 0.96412 0.92618 1.22808 1.00031 0.99775 0.94917 1.22042 0.97115 0.98682 0.97457 1.22131 1.01090 0.94385 0.97131 1.22306 0.98388 1.03483 0.88549 0.85743 1.21254 0.83491 0.74690 0.90827 1.90675 1.30921 1.51891 1.74011 1.45889 1.09296 1.73884 1.06936 1.21902 1.01298 0.98849 0.79076 1.21142 0.92312 1.01431 0.83096 1.44195 1.85629 1.03012 1.01007 1.20601 0.97334 0.84285 0.94755 1.19650 1.33455 0.90590 0.96005 0.90604 1.25861 0.98181 1.00150 1.00758 1.70252 1.39438 1.31040 1.17938 0.85154 0.76952 0.79218 0.78837 1.18682 1.21429 1.22349 0.88600 0.95459 0.92119 0.90431 0.89689 0.91018 0.88698 0.87436 0.91870 0.74578 0.94998 0.95706 0.91736 0.90446 0.98468 0.95909 0.94448 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.88 113.37 1.23 1.91 16 2 O -0.40 -10.85 10.49 -148.98 -1.56 -12.41 16 3 C 0.09 2.18 2.35 31.91 0.08 2.25 16 4 H 0.06 1.57 7.27 -2.39 -0.02 1.55 16 5 C -0.14 -2.09 6.55 31.67 0.21 -1.88 16 6 C -0.12 -1.36 6.80 31.32 0.21 -1.15 16 7 C -0.11 -1.60 6.29 31.32 0.20 -1.40 16 8 C -0.11 -2.35 2.98 -10.44 -0.03 -2.38 16 9 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 10 C 0.51 16.57 7.02 87.66 0.61 17.19 16 11 O -0.59 -25.97 15.77 -3.02 -0.05 -26.02 16 12 N -0.71 -21.07 5.49 -463.07 -2.54 -23.61 16 13 C 0.12 4.66 6.00 86.38 0.52 5.18 16 14 C 0.15 5.63 5.82 86.38 0.50 6.13 16 15 N -0.62 -30.93 2.93 -726.93 -2.13 -33.06 16 16 C 0.18 8.75 9.01 127.77 1.15 9.90 16 17 C -0.27 -14.80 9.67 84.03 0.81 -13.98 16 18 H 0.08 4.04 7.84 -2.91 -0.02 4.01 16 19 C -0.05 -3.12 5.13 84.86 0.44 -2.69 16 20 N -0.94 -57.19 10.59 21.65 0.23 -56.96 16 21 Si 0.97 45.95 29.57 68.60 2.03 47.98 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 0.68 8.11 -2.39 -0.02 0.66 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 34 H 0.42 8.64 8.45 -92.71 -0.78 7.86 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 38 H 0.08 2.44 7.86 -2.39 -0.02 2.43 16 39 H 0.00 -0.17 7.42 -2.38 -0.02 -0.19 16 40 H 0.02 1.21 7.19 -2.39 -0.02 1.19 16 41 H 0.04 1.53 7.85 -2.39 -0.02 1.52 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -75.73 342.25 2.11 -73.62 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.20 Total: 11.38 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.93 Total: 19.07 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.44 Total: -113.63 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.61 Total: -38.43 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.73 2.11 -73.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266290934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.612 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds