Wall clock time and date at job start Mon Mar 30 2020 01:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47085 * 2 1 4 4 C 1.42903 * 113.99838 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46726 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47194 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.64182 * 308.13884 * 10 9 8 12 12 C 1.55158 * 110.72242 * 184.99837 * 10 9 8 13 13 C 1.54905 * 101.58272 * 206.13526 * 12 10 9 14 14 N 1.47415 * 104.83505 * 37.00837 * 13 12 10 15 15 C 1.36943 * 125.65066 * 155.82705 * 14 13 12 16 16 H 1.07994 * 119.99777 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99589 * 0.02562 * 15 14 13 18 18 N 1.31617 * 120.00551 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47055 * 60.00143 * 19 17 15 21 21 H 1.48499 * 109.47083 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47171 * 300.00163 * 19 17 15 23 23 C 1.47026 * 108.70495 * 335.87113 * 14 13 12 24 24 H 1.08994 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47115 * 300.00177 * 1 2 3 26 26 H 1.08997 * 109.46621 * 59.99987 * 1 2 3 27 27 H 1.09004 * 109.47670 * 239.99977 * 2 1 3 28 28 H 1.08996 * 109.47060 * 119.99708 * 2 1 3 29 29 H 1.09001 * 109.46938 * 60.00058 * 4 3 2 30 30 H 1.08992 * 109.47388 * 300.00049 * 4 3 2 31 31 H 1.09002 * 109.47398 * 300.00244 * 5 4 3 32 32 H 1.09001 * 109.47194 * 60.00425 * 5 4 3 33 33 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47021 * 299.99722 * 9 8 6 35 35 H 1.09001 * 109.47001 * 59.99554 * 9 8 6 36 36 H 1.08997 * 110.99938 * 324.21123 * 12 10 9 37 37 H 1.09004 * 111.00375 * 88.01933 * 12 10 9 38 38 H 1.09000 * 110.36635 * 155.84777 * 13 12 10 39 39 H 1.09006 * 110.36598 * 278.05599 * 13 12 10 40 40 H 0.96996 * 120.00426 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.88224 * 241.64613 * 23 14 13 42 42 H 1.08994 * 109.88381 * 120.47223 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3277 3.0574 -0.0001 7 8 6.0151 2.0583 0.0008 8 7 5.9073 4.2742 -0.0002 9 6 7.3677 4.3899 -0.0008 10 6 7.7622 5.8682 -0.0013 11 1 7.2523 6.4016 -0.8036 12 6 9.3005 6.0258 -0.1284 13 6 9.5299 7.3976 0.5537 14 7 8.5714 7.4274 1.6732 15 6 8.6957 8.1802 2.8105 16 1 7.9356 8.1312 3.5761 17 6 9.7985 9.0060 2.9790 18 7 10.7246 9.0660 2.0457 19 14 9.9677 10.0333 4.5300 20 1 10.0050 9.1387 5.7147 21 1 11.2241 10.8224 4.4665 22 1 8.8088 10.9550 4.6420 23 6 7.4604 6.5144 1.3672 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8935 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8333 0.9768 0.8907 31 1 3.4230 3.4215 -0.8905 32 1 3.4222 3.4225 0.8894 33 1 5.3574 5.0733 -0.0006 34 1 7.7708 3.9063 0.8890 35 1 7.7701 3.9065 -0.8910 36 1 9.8201 5.2314 0.4072 37 1 9.6054 6.0531 -1.1746 38 1 10.5515 7.4695 0.9269 39 1 9.3244 8.2081 -0.1457 40 1 11.4954 9.6428 2.1636 41 1 6.5255 7.0724 1.3156 42 1 7.3924 5.7431 2.1343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266502553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:09 Heat of formation + Delta-G solvation = -73.129052 kcal Electronic energy + Delta-G solvation = -20354.157153 eV Core-core repulsion = 17141.544970 eV Total energy + Delta-G solvation = -3212.612183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85023 -38.22962 -37.60595 -34.68555 -32.85390 -32.42437 -30.65088 -29.66766 -28.20320 -25.67525 -24.21652 -23.08707 -22.84890 -20.66313 -19.95798 -19.53180 -17.55980 -16.84282 -16.69993 -16.18231 -16.01285 -15.50958 -14.93797 -14.64202 -14.44540 -13.92118 -13.73805 -13.45569 -12.92065 -12.67653 -12.51518 -12.24772 -12.04977 -11.77035 -11.70414 -11.51372 -11.35448 -11.31400 -10.96751 -10.79595 -10.44105 -10.17019 -10.04808 -9.94288 -9.86299 -9.75433 -9.51195 -8.99031 -8.65631 -6.84548 -5.66196 -3.08070 2.60754 2.92245 3.40024 3.44109 3.45521 3.69745 4.47924 4.59685 4.71882 4.81618 4.82559 4.98454 5.07328 5.13709 5.24101 5.27160 5.38147 5.41397 5.51646 5.53897 5.56793 5.63298 5.69779 5.78531 5.87536 6.05840 6.09982 6.33603 6.42183 6.54528 6.57446 6.71048 6.89690 6.91103 7.49825 7.50839 7.61390 7.84727 8.19615 8.35676 9.21271 9.82234 10.46981 11.37707 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034080 B = 0.002809 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.395254 B = 9965.113705 C =10564.795550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.141 4.141 6 C 0.515 3.485 7 O -0.548 6.548 8 N -0.723 5.723 9 C 0.132 3.868 10 C -0.114 4.114 11 H 0.076 0.924 12 C -0.135 4.135 13 C 0.151 3.849 14 N -0.605 5.605 15 C -0.224 4.224 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.141 3.859 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.403 0.597 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.253 0.747 41 H 0.018 0.982 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 -13.967 -6.686 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.181 4.181 6 C 0.301 3.699 7 O -0.426 6.426 8 N -0.374 5.374 9 C 0.008 3.992 10 C -0.134 4.134 11 H 0.094 0.906 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.746 3.254 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.015 3.985 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.827 -14.356 -6.581 21.662 hybrid contribution -0.054 0.814 0.756 1.112 sum -14.881 -13.542 -5.825 20.947 Atomic orbital electron populations 1.21748 0.93730 1.02231 1.03152 1.22447 0.95468 0.83625 1.00279 1.87808 1.21255 1.26716 1.95588 1.22103 0.80511 0.95486 1.01729 1.21476 0.92715 0.98111 1.05751 1.20357 0.89963 0.83465 0.76096 1.90707 1.65440 1.36486 1.50017 1.46079 1.08587 1.08022 1.74727 1.21479 0.78710 0.96851 1.02126 1.22447 0.98648 0.93227 0.99056 0.90551 1.23009 0.92802 1.01568 1.00093 1.21930 0.98116 0.89520 0.87764 1.44501 1.20821 1.48881 1.18883 1.19030 1.04827 1.16949 0.94399 0.90583 1.24795 0.97213 1.00220 0.98486 1.69781 1.11953 1.42208 1.33189 0.86142 0.77012 0.79885 0.82389 1.21151 1.21553 1.21218 1.21338 0.91847 0.92578 0.92714 0.91117 0.91808 0.91859 0.93338 0.93288 0.92471 0.92383 0.88064 0.87918 0.76280 0.91190 0.91634 0.91842 0.92122 0.87530 0.97001 0.93658 0.96377 0.95806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.13 10.34 -35.23 -0.36 -4.49 16 4 C 0.08 0.82 5.23 37.16 0.19 1.02 16 5 C -0.14 -1.36 6.07 -27.88 -0.17 -1.53 16 6 C 0.52 6.65 7.83 -10.98 -0.09 6.56 16 7 O -0.55 -9.12 15.98 5.56 0.09 -9.03 16 8 N -0.72 -8.93 5.47 -60.30 -0.33 -9.26 16 9 C 0.13 1.91 5.02 -4.05 -0.02 1.89 16 10 C -0.11 -1.87 2.96 -88.78 -0.26 -2.14 16 11 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.14 -2.49 6.53 -24.58 -0.16 -2.65 16 13 C 0.15 3.64 5.89 -2.54 -0.01 3.63 16 14 N -0.60 -15.42 3.39 -170.08 -0.58 -16.00 16 15 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 19 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.14 2.85 6.75 -3.06 -0.02 2.83 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 4.10 8.47 -40.82 -0.35 3.76 16 34 H 0.07 1.14 7.93 -51.93 -0.41 0.72 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -32.37 343.18 -7.98 -40.34 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.34 Total: -0.37 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.16 Total: 2.91 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.35 Total: -51.58 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.28 Total: -13.52 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.37 -7.98 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266502553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.785 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds