Wall clock time and date at job start Mon Mar 30 2020 01:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47085 * 2 1 4 4 C 1.42903 * 113.99838 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46726 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47194 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.64182 * 308.13884 * 10 9 8 12 12 C 1.55158 * 110.72242 * 184.99837 * 10 9 8 13 13 C 1.54905 * 101.58272 * 206.13526 * 12 10 9 14 14 N 1.47415 * 104.83505 * 37.00837 * 13 12 10 15 15 C 1.36943 * 125.65066 * 155.82705 * 14 13 12 16 16 H 1.07994 * 119.99777 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99589 * 0.02562 * 15 14 13 18 18 N 1.31617 * 120.00551 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47055 * 60.00143 * 19 17 15 21 21 H 1.48499 * 109.47083 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47171 * 300.00163 * 19 17 15 23 23 C 1.47026 * 108.70495 * 335.87113 * 14 13 12 24 24 H 1.08994 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47115 * 300.00177 * 1 2 3 26 26 H 1.08997 * 109.46621 * 59.99987 * 1 2 3 27 27 H 1.09004 * 109.47670 * 239.99977 * 2 1 3 28 28 H 1.08996 * 109.47060 * 119.99708 * 2 1 3 29 29 H 1.09001 * 109.46938 * 60.00058 * 4 3 2 30 30 H 1.08992 * 109.47388 * 300.00049 * 4 3 2 31 31 H 1.09002 * 109.47398 * 300.00244 * 5 4 3 32 32 H 1.09001 * 109.47194 * 60.00425 * 5 4 3 33 33 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47021 * 299.99722 * 9 8 6 35 35 H 1.09001 * 109.47001 * 59.99554 * 9 8 6 36 36 H 1.08997 * 110.99938 * 324.21123 * 12 10 9 37 37 H 1.09004 * 111.00375 * 88.01933 * 12 10 9 38 38 H 1.09000 * 110.36635 * 155.84777 * 13 12 10 39 39 H 1.09006 * 110.36598 * 278.05599 * 13 12 10 40 40 H 0.96996 * 120.00426 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.88224 * 241.64613 * 23 14 13 42 42 H 1.08994 * 109.88381 * 120.47223 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3277 3.0574 -0.0001 7 8 6.0151 2.0583 0.0008 8 7 5.9073 4.2742 -0.0002 9 6 7.3677 4.3899 -0.0008 10 6 7.7622 5.8682 -0.0013 11 1 7.2523 6.4016 -0.8036 12 6 9.3005 6.0258 -0.1284 13 6 9.5299 7.3976 0.5537 14 7 8.5714 7.4274 1.6732 15 6 8.6957 8.1802 2.8105 16 1 7.9356 8.1312 3.5761 17 6 9.7985 9.0060 2.9790 18 7 10.7246 9.0660 2.0457 19 14 9.9677 10.0333 4.5300 20 1 10.0050 9.1387 5.7147 21 1 11.2241 10.8224 4.4665 22 1 8.8088 10.9550 4.6420 23 6 7.4604 6.5144 1.3672 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8935 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8333 0.9768 0.8907 31 1 3.4230 3.4215 -0.8905 32 1 3.4222 3.4225 0.8894 33 1 5.3574 5.0733 -0.0006 34 1 7.7708 3.9063 0.8890 35 1 7.7701 3.9065 -0.8910 36 1 9.8201 5.2314 0.4072 37 1 9.6054 6.0531 -1.1746 38 1 10.5515 7.4695 0.9269 39 1 9.3244 8.2081 -0.1457 40 1 11.4954 9.6428 2.1636 41 1 6.5255 7.0724 1.3156 42 1 7.3924 5.7431 2.1343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266502553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:09 Heat of formation + Delta-G solvation = -95.318752 kcal Electronic energy + Delta-G solvation = -20355.119371 eV Core-core repulsion = 17141.544970 eV Total energy + Delta-G solvation = -3213.574400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91939 -39.35829 -38.82551 -36.06523 -34.33987 -33.46701 -31.77792 -31.07495 -29.74760 -27.34721 -25.65234 -24.02261 -23.66916 -22.16650 -21.42624 -20.86416 -18.92067 -18.34719 -17.52218 -17.32869 -16.97322 -16.69830 -16.52211 -16.06121 -15.53661 -15.23248 -14.87609 -14.54087 -14.27148 -14.16097 -13.53485 -13.40391 -13.20424 -13.16821 -12.96386 -12.80834 -12.68730 -12.64212 -12.05439 -12.02369 -12.00450 -11.87587 -11.82438 -11.58189 -11.37959 -10.93055 -10.72983 -10.59851 -10.08883 -8.87723 -7.77271 -5.21511 1.46412 1.49518 1.55909 1.60653 2.01062 2.49810 2.88996 3.32047 3.63959 3.74621 3.81714 3.99539 4.03952 4.06606 4.14737 4.18441 4.39329 4.46508 4.49488 4.52197 4.65759 4.70696 4.76571 4.83048 4.84392 4.92538 4.93468 5.05074 5.06906 5.13719 5.28818 5.35443 5.44344 5.49158 5.66681 5.83374 6.19545 6.32402 6.53910 7.11492 7.21675 7.79655 8.42904 9.24384 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034080 B = 0.002809 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.395254 B = 9965.113705 C =10564.795550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.405 6.405 4 C 0.080 3.920 5 C -0.131 4.131 6 C 0.516 3.484 7 O -0.589 6.589 8 N -0.715 5.715 9 C 0.143 3.857 10 C -0.093 4.093 11 H 0.098 0.902 12 C -0.123 4.123 13 C 0.151 3.849 14 N -0.629 5.629 15 C -0.240 4.240 16 H 0.080 0.920 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.137 3.863 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.416 0.584 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.070 0.930 39 H -0.009 1.009 40 H 0.247 0.753 41 H 0.030 0.970 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 -14.498 -7.095 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.325 6.325 4 C 0.003 3.997 5 C -0.170 4.170 6 C 0.304 3.696 7 O -0.470 6.470 8 N -0.367 5.367 9 C 0.019 3.981 10 C -0.112 4.112 11 H 0.116 0.884 12 C -0.162 4.162 13 C 0.026 3.974 14 N -0.356 5.356 15 C -0.369 4.369 16 H 0.097 0.903 17 C -0.262 4.262 18 N -0.599 5.599 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.203 1.203 23 C 0.012 3.988 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.009 0.991 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.734 -14.889 -6.996 23.466 hybrid contribution 0.485 0.944 0.884 1.381 sum -16.248 -13.945 -6.112 22.267 Atomic orbital electron populations 1.21761 0.92462 1.03435 1.02889 1.22677 0.96551 0.82757 1.00792 1.87787 1.20956 1.28161 1.95627 1.22038 0.80714 0.95968 1.00995 1.21437 0.90090 0.97941 1.07570 1.20865 0.91146 0.82755 0.74868 1.90696 1.66593 1.37803 1.51864 1.45959 1.07767 1.08672 1.74304 1.21194 0.80110 0.95047 1.01738 1.22284 0.97167 0.94359 0.97403 0.88357 1.22851 0.94504 0.97805 1.01067 1.21731 0.96108 0.92140 0.87414 1.44832 1.22748 1.49366 1.18611 1.19416 1.04879 1.17167 0.95464 0.90252 1.25648 0.97168 1.01789 1.01552 1.70045 1.12225 1.42780 1.34829 0.85123 0.76771 0.78304 0.78955 1.20434 1.21952 1.20316 1.21525 0.90746 0.91812 0.94728 0.89229 0.92159 0.91980 0.92693 0.92961 0.93005 0.93474 0.85756 0.86372 0.74728 0.93040 0.90701 0.92033 0.89206 0.91196 0.99106 0.94337 0.95206 0.96201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.41 -7.85 10.34 -148.98 -1.54 -9.39 16 4 C 0.08 1.56 5.23 71.98 0.38 1.94 16 5 C -0.13 -2.20 6.07 29.85 0.18 -2.02 16 6 C 0.52 12.27 7.83 87.66 0.69 12.96 16 7 O -0.59 -18.96 15.98 -3.02 -0.05 -19.01 16 8 N -0.72 -15.78 5.47 -463.07 -2.53 -18.32 16 9 C 0.14 3.84 5.02 86.38 0.43 4.28 16 10 C -0.09 -2.83 2.96 -9.60 -0.03 -2.86 16 11 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 12 C -0.12 -4.37 6.53 31.99 0.21 -4.16 16 13 C 0.15 7.36 5.89 86.86 0.51 7.87 16 14 N -0.63 -32.22 3.39 -692.01 -2.35 -34.57 16 15 C -0.24 -13.51 10.27 84.03 0.86 -12.65 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 18 N -0.95 -56.75 10.09 21.65 0.22 -56.54 16 19 Si 0.98 45.77 29.55 68.60 2.03 47.79 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.14 5.35 6.75 86.73 0.59 5.93 16 24 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.05 1.05 8.10 -2.39 -0.02 1.04 16 30 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.42 7.08 8.47 -92.70 -0.79 6.30 16 34 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 37 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.07 3.93 5.87 -2.39 -0.01 3.92 16 39 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.02 0.80 7.68 -2.39 -0.02 0.78 16 Total: -1.00 -71.01 343.18 1.48 -69.54 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.20 Total: 12.41 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.50 Total: 8.09 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.66 Total: -109.43 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.59 Total: -28.40 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.01 1.48 -69.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266502553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.782 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds