Wall clock time and date at job start Mon Mar 30 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99726 * 2 1 4 4 C 1.53002 * 109.47272 * 269.99822 * 3 2 1 5 5 N 1.46498 * 109.47603 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00200 * 180.02562 * 5 4 3 7 7 H 1.07993 * 119.99727 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99710 * 179.97438 * 6 5 4 9 9 N 1.31623 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46925 * 90.00006 * 10 8 6 12 12 H 1.48494 * 109.47101 * 210.00458 * 10 8 6 13 13 H 1.48504 * 109.46848 * 330.00121 * 10 8 6 14 14 C 1.34777 * 120.00050 * 179.97438 * 2 1 3 15 15 O 1.21282 * 119.99982 * 179.97438 * 14 2 1 16 16 C 1.50699 * 119.99987 * 0.02562 * 14 2 1 17 17 C 1.53006 * 109.46792 * 179.97438 * 16 14 2 18 18 C 1.53006 * 109.46752 * 179.97438 * 17 16 14 19 19 H 1.08995 * 111.01892 * 50.77677 * 18 17 16 20 20 C 1.55305 * 111.12200 * 175.00160 * 18 17 16 21 21 C 1.54382 * 102.43395 * 152.15163 * 20 18 17 22 22 O 1.43232 * 107.59109 * 338.54226 * 21 20 18 23 23 C 1.43649 * 109.97368 * 358.28680 * 22 21 20 24 24 H 1.08995 * 109.47160 * 269.99869 * 1 2 3 25 25 H 1.08994 * 109.47106 * 30.00485 * 1 2 3 26 26 H 1.08999 * 109.46984 * 150.00274 * 1 2 3 27 27 H 1.09000 * 109.47503 * 30.00119 * 3 2 1 28 28 H 1.09003 * 109.47227 * 150.00054 * 3 2 1 29 29 H 1.09000 * 109.47099 * 300.00545 * 4 3 2 30 30 H 1.09003 * 109.46805 * 59.99974 * 4 3 2 31 31 H 0.97000 * 119.99745 * 359.97438 * 5 4 3 32 32 H 0.97003 * 119.99562 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47450 * 59.99569 * 16 14 2 34 34 H 1.08996 * 109.47051 * 299.99562 * 16 14 2 35 35 H 1.09000 * 109.47113 * 59.99806 * 17 16 14 36 36 H 1.08995 * 109.47120 * 299.99328 * 17 16 14 37 37 H 1.09002 * 110.85041 * 33.86009 * 20 18 17 38 38 H 1.09001 * 110.84389 * 270.44146 * 20 18 17 39 39 H 1.09009 * 109.82643 * 98.05629 * 21 20 18 40 40 H 1.08995 * 109.83122 * 219.02553 * 21 20 18 41 41 H 1.08999 * 110.31137 * 143.34271 * 23 22 21 42 42 H 1.09000 * 110.31061 * 265.41699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9789 -1.4426 6 6 3.5274 3.5720 -2.6285 7 1 3.2572 3.1045 -3.5637 8 6 4.2215 4.7741 -2.6285 9 7 4.5513 5.3436 -1.4886 10 14 4.6886 5.5829 -4.2463 11 1 3.5999 6.4972 -4.6751 12 1 5.9436 6.3565 -4.0687 13 1 4.8936 4.5378 -5.2811 14 6 2.1389 -1.1672 0.0005 15 8 3.3518 -1.1672 0.0001 16 6 1.3854 -2.4723 0.0005 17 6 2.3798 -3.6352 0.0005 18 6 1.6148 -4.9603 0.0012 19 1 0.8619 -4.9774 -0.7868 20 6 2.5847 -6.1666 -0.1250 21 6 1.8096 -7.2928 0.5920 22 8 0.8537 -6.6748 1.4614 23 6 0.9788 -5.2455 1.3912 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5000 1.8407 -1.9563 31 1 3.4279 3.3989 -0.6026 32 1 5.0360 6.1839 -1.4887 33 1 0.7591 -2.5303 -0.8896 34 1 0.7585 -2.5299 0.8903 35 1 3.0065 -3.5774 0.8905 36 1 3.0063 -3.5775 -0.8895 37 1 3.5276 -5.9610 0.3819 38 1 2.7559 -6.4188 -1.1716 39 1 1.2951 -7.9129 -0.1422 40 1 2.4992 -7.9032 1.1749 41 1 -0.0024 -4.7760 1.4613 42 1 1.6287 -4.8830 2.1876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266671091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:19 Heat of formation + Delta-G solvation = -80.245710 kcal Electronic energy + Delta-G solvation = -20513.281860 eV Core-core repulsion = 17300.361076 eV Total energy + Delta-G solvation = -3212.920784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08726 -39.44704 -36.01743 -34.72852 -34.31037 -31.66401 -30.99669 -29.18923 -28.04167 -26.45154 -24.80895 -23.36978 -22.42128 -21.41982 -20.72349 -18.99750 -17.22597 -17.07069 -16.98616 -16.04657 -15.89564 -15.62114 -15.16270 -14.57472 -14.10483 -13.85301 -13.71555 -13.47429 -13.34026 -13.08473 -12.85585 -12.81976 -12.41985 -12.20356 -11.91070 -11.60612 -11.36800 -11.22656 -11.05098 -10.97107 -10.87995 -10.78010 -10.66179 -10.10459 -9.84997 -9.78229 -9.60181 -8.86457 -8.49536 -6.92346 -5.75283 -3.04542 2.74952 3.08626 3.44788 3.49714 3.51999 3.55346 4.09401 4.32924 4.50062 4.61360 4.62969 4.76449 4.87061 4.94966 5.02712 5.06400 5.25172 5.32548 5.35513 5.39062 5.42331 5.49729 5.52198 5.57689 5.63499 5.68597 5.72459 5.84763 5.91631 6.04347 6.07718 6.14256 6.56398 6.65346 6.75162 6.92138 7.51685 7.70992 8.30998 8.43423 9.54109 10.10460 10.45543 11.47689 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.002818 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.058891 B = 9934.526449 C =10287.200903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.107 3.893 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.507 3.493 15 O -0.534 6.534 16 C -0.139 4.139 17 C -0.094 4.094 18 C -0.123 4.123 19 H 0.088 0.912 20 C -0.153 4.153 21 C 0.051 3.949 22 O -0.388 6.388 23 C 0.053 3.947 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -22.291 5.500 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.295 3.705 15 O -0.411 6.411 16 C -0.179 4.179 17 C -0.131 4.131 18 C -0.142 4.142 19 H 0.107 0.893 20 C -0.191 4.191 21 C -0.026 4.026 22 O -0.307 6.307 23 C -0.023 4.023 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.364 -22.367 5.457 25.248 hybrid contribution 0.370 0.865 -0.808 1.241 sum -9.993 -21.502 4.648 24.162 Atomic orbital electron populations 1.21809 0.79738 1.03418 1.01616 1.47854 1.06912 1.06468 1.73522 1.21702 0.97476 0.83294 0.99108 1.20897 0.95010 0.89376 0.93225 1.42218 1.67082 1.21652 1.06594 1.19205 1.29403 1.02342 0.85963 0.91218 1.24757 1.01256 0.98071 0.96958 1.69665 1.45065 1.19552 1.23955 0.86155 0.77679 0.79233 0.82932 1.21697 1.21698 1.20748 1.20659 0.88165 0.85350 0.76315 1.90736 1.13944 1.87286 1.49095 1.21728 0.99478 0.92555 1.04129 1.21267 0.97063 0.90474 1.04338 1.23020 0.97972 0.95115 0.98051 0.89337 1.23181 0.99369 0.94467 1.02080 1.23115 0.91095 0.95532 0.92834 1.88389 1.57971 1.18868 1.65504 1.23621 1.01119 0.81308 0.96299 0.92664 0.90579 0.91235 0.90554 0.89748 0.96011 0.96519 0.78265 0.93476 0.88864 0.89100 0.90703 0.90394 0.90158 0.89867 0.91374 0.91524 0.89731 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.24 59.85 0.61 1.33 16 2 N -0.61 -8.51 2.87 -181.57 -0.52 -9.03 16 3 C 0.11 1.86 5.52 -4.04 -0.02 1.83 16 4 C 0.14 3.08 6.58 -4.04 -0.03 3.05 16 5 N -0.73 -19.37 5.60 -59.91 -0.34 -19.71 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 10 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.51 7.27 7.67 -10.99 -0.08 7.19 16 15 O -0.53 -10.12 15.56 5.56 0.09 -10.04 16 16 C -0.14 -1.27 4.16 -27.88 -0.12 -1.38 16 17 C -0.09 -0.87 4.03 -26.73 -0.11 -0.97 16 18 C -0.12 -0.91 3.07 -88.06 -0.27 -1.18 16 19 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 20 C -0.15 -1.08 6.48 -24.78 -0.16 -1.24 16 21 C 0.05 0.38 7.80 37.88 0.30 0.68 16 22 O -0.39 -3.86 11.36 -35.23 -0.40 -4.26 16 23 C 0.05 0.42 6.83 38.49 0.26 0.68 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 27 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 10.55 7.67 -40.82 -0.31 10.23 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 0.69 7.40 -51.93 -0.38 0.31 16 34 H 0.09 0.64 7.77 -51.93 -0.40 0.23 16 35 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.50 7.91 -51.93 -0.41 0.09 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -34.97 343.30 -7.41 -42.38 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.25 Total: 3.35 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 0.14 Total: 2.40 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.13 Total: -56.86 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.31 Total: -14.30 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.97 -7.41 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266671091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.864 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds