Wall clock time and date at job start Mon Mar 30 2020 01:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99726 * 2 1 4 4 C 1.53002 * 109.47272 * 269.99822 * 3 2 1 5 5 N 1.46498 * 109.47603 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00200 * 180.02562 * 5 4 3 7 7 H 1.07993 * 119.99727 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99710 * 179.97438 * 6 5 4 9 9 N 1.31623 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46925 * 90.00006 * 10 8 6 12 12 H 1.48494 * 109.47101 * 210.00458 * 10 8 6 13 13 H 1.48504 * 109.46848 * 330.00121 * 10 8 6 14 14 C 1.34777 * 120.00050 * 179.97438 * 2 1 3 15 15 O 1.21282 * 119.99982 * 179.97438 * 14 2 1 16 16 C 1.50699 * 119.99987 * 0.02562 * 14 2 1 17 17 C 1.53006 * 109.46792 * 179.97438 * 16 14 2 18 18 C 1.53006 * 109.46752 * 179.97438 * 17 16 14 19 19 H 1.08995 * 111.01892 * 50.77677 * 18 17 16 20 20 C 1.55305 * 111.12200 * 175.00160 * 18 17 16 21 21 C 1.54382 * 102.43395 * 152.15163 * 20 18 17 22 22 O 1.43232 * 107.59109 * 338.54226 * 21 20 18 23 23 C 1.43649 * 109.97368 * 358.28680 * 22 21 20 24 24 H 1.08995 * 109.47160 * 269.99869 * 1 2 3 25 25 H 1.08994 * 109.47106 * 30.00485 * 1 2 3 26 26 H 1.08999 * 109.46984 * 150.00274 * 1 2 3 27 27 H 1.09000 * 109.47503 * 30.00119 * 3 2 1 28 28 H 1.09003 * 109.47227 * 150.00054 * 3 2 1 29 29 H 1.09000 * 109.47099 * 300.00545 * 4 3 2 30 30 H 1.09003 * 109.46805 * 59.99974 * 4 3 2 31 31 H 0.97000 * 119.99745 * 359.97438 * 5 4 3 32 32 H 0.97003 * 119.99562 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47450 * 59.99569 * 16 14 2 34 34 H 1.08996 * 109.47051 * 299.99562 * 16 14 2 35 35 H 1.09000 * 109.47113 * 59.99806 * 17 16 14 36 36 H 1.08995 * 109.47120 * 299.99328 * 17 16 14 37 37 H 1.09002 * 110.85041 * 33.86009 * 20 18 17 38 38 H 1.09001 * 110.84389 * 270.44146 * 20 18 17 39 39 H 1.09009 * 109.82643 * 98.05629 * 21 20 18 40 40 H 1.08995 * 109.83122 * 219.02553 * 21 20 18 41 41 H 1.08999 * 110.31137 * 143.34271 * 23 22 21 42 42 H 1.09000 * 110.31061 * 265.41699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9789 -1.4426 6 6 3.5274 3.5720 -2.6285 7 1 3.2572 3.1045 -3.5637 8 6 4.2215 4.7741 -2.6285 9 7 4.5513 5.3436 -1.4886 10 14 4.6886 5.5829 -4.2463 11 1 3.5999 6.4972 -4.6751 12 1 5.9436 6.3565 -4.0687 13 1 4.8936 4.5378 -5.2811 14 6 2.1389 -1.1672 0.0005 15 8 3.3518 -1.1672 0.0001 16 6 1.3854 -2.4723 0.0005 17 6 2.3798 -3.6352 0.0005 18 6 1.6148 -4.9603 0.0012 19 1 0.8619 -4.9774 -0.7868 20 6 2.5847 -6.1666 -0.1250 21 6 1.8096 -7.2928 0.5920 22 8 0.8537 -6.6748 1.4614 23 6 0.9788 -5.2455 1.3912 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5000 1.8407 -1.9563 31 1 3.4279 3.3989 -0.6026 32 1 5.0360 6.1839 -1.4887 33 1 0.7591 -2.5303 -0.8896 34 1 0.7585 -2.5299 0.8903 35 1 3.0065 -3.5774 0.8905 36 1 3.0063 -3.5775 -0.8895 37 1 3.5276 -5.9610 0.3819 38 1 2.7559 -6.4188 -1.1716 39 1 1.2951 -7.9129 -0.1422 40 1 2.4992 -7.9032 1.1749 41 1 -0.0024 -4.7760 1.4613 42 1 1.6287 -4.8830 2.1876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266671091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:18 Heat of formation + Delta-G solvation = -104.903771 kcal Electronic energy + Delta-G solvation = -20514.351114 eV Core-core repulsion = 17300.361076 eV Total energy + Delta-G solvation = -3213.990038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07455 -40.22153 -37.45529 -36.06726 -35.49992 -33.45350 -31.92822 -30.26153 -29.21427 -27.45814 -26.15272 -24.81877 -23.35246 -22.78922 -21.40341 -20.13384 -19.20324 -18.06622 -17.71915 -17.18517 -16.81440 -16.57243 -16.50034 -15.85676 -15.40521 -15.24129 -15.10799 -14.65595 -14.40399 -14.23963 -13.99330 -13.73537 -13.24468 -13.09632 -13.00891 -12.85804 -12.75535 -12.52731 -12.35834 -12.24312 -12.14632 -11.95774 -11.89527 -11.62403 -11.44182 -11.00363 -10.81177 -10.46326 -9.67596 -9.09441 -8.00142 -5.31339 1.44746 1.47812 1.56276 1.65791 2.01247 2.54259 2.96323 3.33000 3.49227 3.56148 3.81197 3.96866 4.04839 4.08533 4.19994 4.23013 4.25472 4.35781 4.37657 4.44140 4.54943 4.61920 4.69448 4.76068 4.83410 4.86614 4.92999 4.98702 4.99125 5.04089 5.06876 5.09988 5.22346 5.39544 5.41101 5.54723 6.06360 6.21407 6.45357 7.21528 7.27322 7.98976 8.24276 9.23308 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.002818 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.058891 B = 9934.526449 C =10287.200903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.614 5.614 3 C 0.120 3.880 4 C 0.150 3.850 5 N -0.744 5.744 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.271 1.271 14 C 0.497 3.503 15 O -0.592 6.592 16 C -0.127 4.127 17 C -0.088 4.088 18 C -0.113 4.113 19 H 0.105 0.895 20 C -0.155 4.155 21 C 0.047 3.953 22 O -0.411 6.411 23 C 0.049 3.951 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.056 0.944 29 H -0.002 1.002 30 H 0.030 0.970 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.081 -23.304 4.712 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C -0.004 4.004 4 C 0.022 3.978 5 N -0.388 5.388 6 C -0.384 4.384 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.807 3.193 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.196 1.196 14 C 0.288 3.712 15 O -0.473 6.473 16 C -0.166 4.166 17 C -0.127 4.127 18 C -0.131 4.131 19 H 0.123 0.877 20 C -0.192 4.192 21 C -0.029 4.029 22 O -0.331 6.331 23 C -0.027 4.027 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.048 0.952 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.617 -23.419 4.663 27.007 hybrid contribution 1.032 1.124 -0.539 1.619 sum -11.585 -22.295 4.125 25.461 Atomic orbital electron populations 1.22157 0.76397 1.04941 1.03694 1.47985 1.08851 1.04919 1.72882 1.21305 0.97304 0.85693 0.96079 1.20945 0.94203 0.86703 0.95918 1.42418 1.67641 1.23091 1.05610 1.19593 1.29190 1.02652 0.86928 0.90880 1.25658 1.01576 0.98840 1.00589 1.69824 1.45976 1.19886 1.26176 0.85060 0.77167 0.78214 0.78813 1.20682 1.21908 1.19647 1.21684 0.87835 0.86930 0.74781 1.90713 1.16743 1.88149 1.51683 1.21783 0.99156 0.88818 1.06851 1.21169 0.97043 0.91836 1.02614 1.22934 0.97983 0.93801 0.98413 0.87729 1.23199 0.98994 0.94362 1.02653 1.23234 0.91064 0.95683 0.92954 1.88362 1.58636 1.19876 1.66222 1.23728 1.02050 0.80655 0.96228 0.90281 0.90807 0.88043 0.88879 0.92557 0.98402 0.95162 0.79290 0.93737 0.86029 0.85974 0.92476 0.92302 0.90930 0.88760 0.90209 0.91221 0.87924 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.24 127.77 1.31 2.35 16 2 N -0.61 -16.12 2.87 -846.76 -2.43 -18.56 16 3 C 0.12 4.20 5.52 86.38 0.48 4.68 16 4 C 0.15 6.50 6.58 86.38 0.57 7.07 16 5 N -0.74 -40.20 5.60 -343.46 -1.92 -42.13 16 6 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 7 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 8 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 9 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 10 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.50 13.85 7.67 87.66 0.67 14.52 16 15 O -0.59 -23.22 15.56 -3.04 -0.05 -23.27 16 16 C -0.13 -1.96 4.16 29.85 0.12 -1.84 16 17 C -0.09 -1.54 4.03 30.60 0.12 -1.42 16 18 C -0.11 -1.42 3.07 -9.14 -0.03 -1.45 16 19 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 20 C -0.15 -1.98 6.48 31.86 0.21 -1.77 16 21 C 0.05 0.64 7.80 72.45 0.56 1.20 16 22 O -0.41 -7.49 11.36 -148.98 -1.69 -9.18 16 23 C 0.05 0.68 6.83 72.84 0.50 1.17 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 1.18 8.07 -2.39 -0.02 1.16 16 26 H 0.10 0.89 6.44 -2.39 -0.02 0.88 16 27 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 28 H 0.06 2.29 7.42 -2.39 -0.02 2.27 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.38 21.22 7.67 -92.71 -0.71 20.51 16 32 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.12 1.27 7.40 -2.39 -0.02 1.25 16 34 H 0.12 1.19 7.77 -2.39 -0.02 1.17 16 35 H 0.06 1.19 7.92 -2.39 -0.02 1.17 16 36 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.07 1.03 8.03 -2.39 -0.02 1.01 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.84 7.91 -2.39 -0.02 0.82 16 Total: -1.00 -77.79 343.30 2.31 -75.48 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.28 Total: 22.25 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.82 Total: 6.68 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -4.07 Total: -121.05 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.74 Total: -32.45 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -77.79 2.31 -75.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266671091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.425 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds