Wall clock time and date at job start Mon Mar 30 2020 01:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47227 * 2 1 4 4 C 1.42893 * 114.00502 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47627 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99743 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00261 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.63267 * 359.97438 * 7 5 4 9 9 C 1.53188 * 108.77584 * 233.58991 * 8 7 5 10 10 C 1.53040 * 109.31188 * 305.35831 * 9 8 7 11 11 C 1.53045 * 109.53493 * 61.37103 * 10 9 8 12 12 H 1.08998 * 109.49775 * 58.58054 * 11 10 9 13 13 N 1.46498 * 109.49560 * 178.68289 * 11 10 9 14 14 C 1.46497 * 120.00053 * 60.00101 * 13 11 10 15 15 C 1.36944 * 119.99895 * 239.99371 * 13 11 10 16 16 H 1.07994 * 120.00211 * 324.57613 * 15 13 11 17 17 C 1.38815 * 119.99527 * 144.56872 * 15 13 11 18 18 N 1.31617 * 119.99556 * 157.66265 * 17 15 13 19 19 Si 1.86798 * 120.00183 * 337.65817 * 17 15 13 20 20 H 1.48502 * 109.47028 * 95.56264 * 19 17 15 21 21 H 1.48504 * 109.47062 * 215.55961 * 19 17 15 22 22 H 1.48503 * 109.47399 * 335.55997 * 19 17 15 23 23 C 1.46928 * 120.63057 * 179.72209 * 7 5 4 24 24 H 1.08996 * 109.47311 * 299.99745 * 1 2 3 25 25 H 1.09001 * 109.46875 * 60.00712 * 1 2 3 26 26 H 1.09007 * 109.46718 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47280 * 239.99723 * 2 1 3 28 28 H 1.09001 * 109.46967 * 120.00070 * 2 1 3 29 29 H 1.09004 * 109.47460 * 300.00532 * 4 3 2 30 30 H 1.09003 * 109.47070 * 59.99745 * 4 3 2 31 31 H 1.09001 * 109.58422 * 353.37642 * 8 7 5 32 32 H 1.08995 * 109.58701 * 113.65186 * 8 7 5 33 33 H 1.08996 * 109.49913 * 65.31687 * 9 8 7 34 34 H 1.09004 * 109.49613 * 185.37747 * 9 8 7 35 35 H 1.09000 * 109.46227 * 181.38609 * 10 9 8 36 36 H 1.09000 * 109.46253 * 301.34986 * 10 9 8 37 37 H 1.08999 * 109.47485 * 88.03495 * 14 13 11 38 38 H 1.09009 * 109.47141 * 208.03149 * 14 13 11 39 39 H 1.08999 * 109.47282 * 328.02627 * 14 13 11 40 40 H 0.96993 * 119.99935 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.58233 * 246.19671 * 23 7 5 42 42 H 1.08998 * 109.58657 * 6.62460 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9609 3.7729 -0.0005 7 7 5.1209 3.2663 -0.0002 8 6 6.1723 2.2400 0.0008 9 6 7.1263 2.5127 1.1680 10 6 7.6490 3.9477 1.0697 11 6 6.4768 4.9270 1.1652 12 1 5.9511 4.7744 2.1078 13 7 6.9812 6.3010 1.1027 14 6 7.7261 6.7550 -0.0743 15 6 6.7563 7.1610 2.1443 16 1 5.8290 7.1107 2.6956 17 6 7.7203 8.0974 2.4918 18 7 7.3766 9.1801 3.1565 19 14 9.5054 7.8208 2.0159 20 1 9.7955 8.5344 0.7463 21 1 10.3901 8.3409 3.0893 22 1 9.7497 6.3674 1.8339 23 6 5.5153 4.6817 -0.0070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9767 0.8908 30 1 3.8340 0.9765 -0.8892 31 1 5.7212 1.2549 0.1201 32 1 6.7217 2.2787 -0.9397 33 1 6.5945 2.3828 2.1105 34 1 7.9636 1.8162 1.1238 35 1 8.3472 4.1365 1.8852 36 1 8.1592 4.0839 0.1162 37 1 7.0293 7.1380 -0.8198 38 1 8.4181 7.5455 0.2163 39 1 8.2853 5.9193 -0.4950 40 1 8.0501 9.8346 3.3990 41 1 6.0139 4.9175 -0.9473 42 1 4.6306 5.3081 0.1071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267100421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:27 Heat of formation + Delta-G solvation = -51.176822 kcal Electronic energy + Delta-G solvation = -21631.722546 eV Core-core repulsion = 18420.062284 eV Total energy + Delta-G solvation = -3211.660263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10701 -38.20433 -37.16712 -35.28717 -32.44486 -31.74279 -31.53410 -29.79846 -27.68662 -26.16902 -24.85187 -23.58006 -22.99902 -21.77626 -19.77934 -18.75810 -17.40128 -16.81617 -16.62542 -16.55937 -15.71688 -15.24655 -15.04367 -14.25736 -14.16224 -14.02990 -13.70753 -13.39989 -13.00264 -12.69296 -12.58687 -12.51985 -12.41853 -12.29669 -12.16868 -11.61734 -11.48851 -11.29212 -11.05710 -10.73392 -10.50013 -10.39162 -10.12745 -9.94813 -9.89977 -9.56384 -9.52334 -8.68811 -8.35251 -6.87046 -5.98655 -3.39422 2.70661 2.76778 3.30137 3.45255 3.49798 3.72834 4.51108 4.51667 4.71701 4.77156 4.86056 4.98070 5.00554 5.07801 5.08984 5.11841 5.19387 5.33220 5.39991 5.45486 5.59745 5.66377 5.74755 5.83579 5.89492 5.98463 6.09357 6.19571 6.30808 6.36679 6.50008 6.56167 6.70181 6.80891 6.87556 6.92906 7.53268 8.02872 8.31341 8.38386 8.96587 9.70207 10.08165 11.16980 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.004182 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.360552 B = 6693.662904 C = 7119.645428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.047 3.953 5 C 0.512 3.488 6 O -0.519 6.519 7 N -0.607 5.607 8 C 0.107 3.893 9 C -0.132 4.132 10 C -0.138 4.138 11 C 0.168 3.832 12 H 0.075 0.925 13 N -0.602 5.602 14 C 0.108 3.892 15 C -0.270 4.270 16 H 0.081 0.919 17 C 0.033 3.967 18 N -0.900 5.900 19 Si 0.885 3.115 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.101 3.899 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.062 0.938 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 -21.320 -7.808 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.033 4.033 5 C 0.298 3.702 6 O -0.394 6.394 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.171 4.171 10 C -0.178 4.178 11 C 0.059 3.941 12 H 0.094 0.906 13 N -0.325 5.325 14 C -0.036 4.036 15 C -0.398 4.398 16 H 0.099 0.901 17 C -0.167 4.167 18 N -0.541 5.541 19 Si 0.716 3.284 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.195 1.195 23 C -0.022 4.022 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.133 -20.502 -7.716 22.292 hybrid contribution 1.481 -0.339 -0.236 1.538 sum -2.651 -20.841 -7.952 22.463 Atomic orbital electron populations 1.21731 0.93436 1.02115 1.03566 1.22535 0.96006 0.83544 1.00038 1.88041 1.18701 1.26140 1.95369 1.22239 0.83686 0.95218 1.02120 1.20155 0.82485 0.90336 0.77217 1.90740 1.48796 1.51668 1.48148 1.48118 1.04669 1.08161 1.73380 1.21768 0.89707 0.90644 0.99484 1.21917 0.98642 0.98251 0.98261 1.22150 1.00031 0.93471 1.02144 1.20814 0.92130 0.84589 0.96542 0.90639 1.44037 1.64739 1.07096 1.16629 1.21345 0.95150 0.97434 0.89713 1.18837 1.00615 1.11015 1.09327 0.90146 1.25424 0.97865 0.96382 0.97046 1.69873 1.33606 1.08535 1.42099 0.86832 0.86795 0.78619 0.76114 1.21591 1.23194 1.19467 1.22419 1.00629 0.79328 0.99871 0.91597 0.91695 0.91067 0.93336 0.93239 0.90390 0.90598 0.90526 0.91266 0.91424 0.91113 0.91339 0.92442 0.96494 0.93641 0.95061 0.92682 0.91975 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.36 -4.88 9.87 -55.14 -0.54 -5.43 16 4 C 0.05 0.54 4.76 36.01 0.17 0.71 16 5 C 0.51 8.15 7.78 -10.99 -0.09 8.06 16 6 O -0.52 -10.87 15.91 -14.36 -0.23 -11.10 16 7 N -0.61 -8.91 2.97 -172.53 -0.51 -9.42 16 8 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 9 C -0.13 -1.53 6.08 -26.61 -0.16 -1.70 16 10 C -0.14 -2.22 5.11 -26.69 -0.14 -2.35 16 11 C 0.17 3.27 2.76 -67.61 -0.19 3.08 16 12 H 0.08 1.60 7.89 -51.93 -0.41 1.19 16 13 N -0.60 -14.24 2.41 -173.11 -0.42 -14.66 16 14 C 0.11 2.34 8.44 59.85 0.51 2.85 16 15 C -0.27 -7.62 9.85 -15.05 -0.15 -7.77 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 17 C 0.03 0.96 5.31 -17.43 -0.09 0.87 16 18 N -0.90 -27.78 13.97 55.49 0.78 -27.00 16 19 Si 0.89 22.22 24.94 -169.99 -4.24 17.98 16 20 H -0.29 -7.04 6.67 56.52 0.38 -6.66 16 21 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.10 1.80 5.81 -3.51 -0.02 1.78 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 30 H 0.08 0.64 7.94 -51.93 -0.41 0.23 16 31 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 1.07 3.08 -51.92 -0.16 0.91 16 39 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.06 1.06 7.52 -51.93 -0.39 0.67 16 42 H 0.09 1.97 7.00 -51.93 -0.36 1.60 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -34.50 328.19 -6.71 -41.21 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.94 Total: -3.07 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.45 Total: 6.54 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.15 Total: -51.07 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.77 Total: -16.53 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.24 Total: 17.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.50 -6.71 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267100421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.965 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds