Wall clock time and date at job start Mon Mar 30 2020 01:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47227 * 2 1 4 4 C 1.42893 * 114.00502 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47627 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99743 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00261 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.63267 * 359.97438 * 7 5 4 9 9 C 1.53188 * 108.77584 * 233.58991 * 8 7 5 10 10 C 1.53040 * 109.31188 * 305.35831 * 9 8 7 11 11 C 1.53045 * 109.53493 * 61.37103 * 10 9 8 12 12 H 1.08998 * 109.49775 * 58.58054 * 11 10 9 13 13 N 1.46498 * 109.49560 * 178.68289 * 11 10 9 14 14 C 1.46497 * 120.00053 * 60.00101 * 13 11 10 15 15 C 1.36944 * 119.99895 * 239.99371 * 13 11 10 16 16 H 1.07994 * 120.00211 * 324.57613 * 15 13 11 17 17 C 1.38815 * 119.99527 * 144.56872 * 15 13 11 18 18 N 1.31617 * 119.99556 * 157.66265 * 17 15 13 19 19 Si 1.86798 * 120.00183 * 337.65817 * 17 15 13 20 20 H 1.48502 * 109.47028 * 95.56264 * 19 17 15 21 21 H 1.48504 * 109.47062 * 215.55961 * 19 17 15 22 22 H 1.48503 * 109.47399 * 335.55997 * 19 17 15 23 23 C 1.46928 * 120.63057 * 179.72209 * 7 5 4 24 24 H 1.08996 * 109.47311 * 299.99745 * 1 2 3 25 25 H 1.09001 * 109.46875 * 60.00712 * 1 2 3 26 26 H 1.09007 * 109.46718 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47280 * 239.99723 * 2 1 3 28 28 H 1.09001 * 109.46967 * 120.00070 * 2 1 3 29 29 H 1.09004 * 109.47460 * 300.00532 * 4 3 2 30 30 H 1.09003 * 109.47070 * 59.99745 * 4 3 2 31 31 H 1.09001 * 109.58422 * 353.37642 * 8 7 5 32 32 H 1.08995 * 109.58701 * 113.65186 * 8 7 5 33 33 H 1.08996 * 109.49913 * 65.31687 * 9 8 7 34 34 H 1.09004 * 109.49613 * 185.37747 * 9 8 7 35 35 H 1.09000 * 109.46227 * 181.38609 * 10 9 8 36 36 H 1.09000 * 109.46253 * 301.34986 * 10 9 8 37 37 H 1.08999 * 109.47485 * 88.03495 * 14 13 11 38 38 H 1.09009 * 109.47141 * 208.03149 * 14 13 11 39 39 H 1.08999 * 109.47282 * 328.02627 * 14 13 11 40 40 H 0.96993 * 119.99935 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.58233 * 246.19671 * 23 7 5 42 42 H 1.08998 * 109.58657 * 6.62460 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9609 3.7729 -0.0005 7 7 5.1209 3.2663 -0.0002 8 6 6.1723 2.2400 0.0008 9 6 7.1263 2.5127 1.1680 10 6 7.6490 3.9477 1.0697 11 6 6.4768 4.9270 1.1652 12 1 5.9511 4.7744 2.1078 13 7 6.9812 6.3010 1.1027 14 6 7.7261 6.7550 -0.0743 15 6 6.7563 7.1610 2.1443 16 1 5.8290 7.1107 2.6956 17 6 7.7203 8.0974 2.4918 18 7 7.3766 9.1801 3.1565 19 14 9.5054 7.8208 2.0159 20 1 9.7955 8.5344 0.7463 21 1 10.3901 8.3409 3.0893 22 1 9.7497 6.3674 1.8339 23 6 5.5153 4.6817 -0.0070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9767 0.8908 30 1 3.8340 0.9765 -0.8892 31 1 5.7212 1.2549 0.1201 32 1 6.7217 2.2787 -0.9397 33 1 6.5945 2.3828 2.1105 34 1 7.9636 1.8162 1.1238 35 1 8.3472 4.1365 1.8852 36 1 8.1592 4.0839 0.1162 37 1 7.0293 7.1380 -0.8198 38 1 8.4181 7.5455 0.2163 39 1 8.2853 5.9193 -0.4950 40 1 8.0501 9.8346 3.3990 41 1 6.0139 4.9175 -0.9473 42 1 4.6306 5.3081 0.1071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267100421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:27 Heat of formation + Delta-G solvation = -75.815511 kcal Electronic energy + Delta-G solvation = -21632.790960 eV Core-core repulsion = 18420.062284 eV Total energy + Delta-G solvation = -3212.728676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30786 -39.32415 -38.37261 -36.87838 -34.15697 -33.11454 -32.47065 -31.20766 -28.74774 -28.06798 -26.04639 -25.21596 -23.66181 -23.08909 -21.22714 -19.98454 -18.92861 -18.42265 -17.61774 -17.45696 -17.38265 -16.60571 -16.18160 -15.70740 -15.37603 -15.27716 -15.15190 -14.51873 -14.30812 -14.27036 -14.07233 -13.73526 -13.69113 -13.66404 -13.23409 -12.91755 -12.60628 -12.31316 -12.20102 -12.12879 -12.07962 -11.85564 -11.80853 -11.67908 -11.32945 -10.84300 -10.65911 -10.63900 -9.74913 -8.80831 -8.22994 -5.61502 1.30180 1.40872 1.53411 1.54083 1.71593 2.40302 2.87644 3.03100 3.32847 3.54847 3.94958 4.00809 4.07210 4.17039 4.17846 4.18536 4.31048 4.35356 4.36693 4.50016 4.53076 4.59302 4.67095 4.78873 4.82419 4.86236 4.88298 4.97620 5.02526 5.04657 5.15975 5.27984 5.41433 5.45880 5.48189 5.87721 6.11489 6.14106 6.44419 6.92494 7.15070 7.58193 7.97148 8.97370 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.004182 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.360552 B = 6693.662904 C = 7119.645428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.055 3.945 5 C 0.500 3.500 6 O -0.587 6.587 7 N -0.604 5.604 8 C 0.102 3.898 9 C -0.125 4.125 10 C -0.131 4.131 11 C 0.166 3.834 12 H 0.041 0.959 13 N -0.616 5.616 14 C 0.106 3.894 15 C -0.267 4.267 16 H 0.029 0.971 17 C -0.027 4.027 18 N -0.954 5.954 19 Si 0.962 3.038 20 H -0.273 1.273 21 H -0.310 1.310 22 H -0.248 1.248 23 C 0.113 3.887 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -25.661 -9.854 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.024 4.024 5 C 0.289 3.711 6 O -0.467 6.467 7 N -0.339 5.339 8 C -0.019 4.019 9 C -0.163 4.163 10 C -0.170 4.170 11 C 0.059 3.941 12 H 0.059 0.941 13 N -0.340 5.340 14 C -0.038 4.038 15 C -0.397 4.397 16 H 0.047 0.953 17 C -0.223 4.223 18 N -0.598 5.598 19 Si 0.790 3.210 20 H -0.200 1.200 21 H -0.239 1.239 22 H -0.171 1.171 23 C -0.012 4.012 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.682 -24.932 -9.793 26.839 hybrid contribution 0.571 0.998 0.413 1.222 sum -1.110 -23.934 -9.380 25.731 Atomic orbital electron populations 1.21796 0.93616 1.03487 1.02202 1.22795 0.96009 0.81845 1.02003 1.88004 1.19927 1.29055 1.95799 1.22344 0.83345 0.91379 1.05374 1.21228 0.82029 0.92242 0.75592 1.90711 1.50735 1.53961 1.51260 1.48223 1.05721 1.07490 1.72427 1.22194 0.88590 0.91014 1.00093 1.21909 1.00131 0.95715 0.98580 1.22012 0.97614 0.95157 1.02201 1.20886 0.93808 0.83715 0.95695 0.94086 1.44105 1.65374 1.08379 1.16182 1.21436 0.95032 0.98516 0.88819 1.18647 0.98903 1.12043 1.10115 0.95346 1.26155 1.02705 0.95703 0.97736 1.70027 1.35123 1.09829 1.44776 0.85604 0.79801 0.79676 0.75921 1.20036 1.23927 1.17107 1.21960 0.98204 0.81474 0.99542 0.93180 0.92887 0.88284 0.90988 0.91405 0.87232 0.86527 0.86186 0.88738 0.92207 0.87096 0.93227 0.90779 0.96153 0.95292 0.90954 0.92677 0.90510 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -10.28 9.87 -129.94 -1.28 -11.56 16 4 C 0.05 1.05 4.76 71.24 0.34 1.39 16 5 C 0.50 15.50 7.78 87.66 0.68 16.18 16 6 O -0.59 -25.82 15.91 15.98 0.25 -25.56 16 7 N -0.60 -16.55 2.97 -818.14 -2.43 -18.98 16 8 C 0.10 1.58 6.34 86.36 0.55 2.13 16 9 C -0.12 -2.32 6.08 30.67 0.19 -2.13 16 10 C -0.13 -3.79 5.11 30.62 0.16 -3.64 16 11 C 0.17 6.53 2.76 45.20 0.12 6.65 16 12 H 0.04 1.85 7.89 -2.39 -0.02 1.83 16 13 N -0.62 -29.58 2.41 -701.60 -1.69 -31.28 16 14 C 0.11 4.40 8.44 127.77 1.08 5.48 16 15 C -0.27 -15.93 9.85 84.03 0.83 -15.10 16 16 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 17 C -0.03 -1.62 5.31 84.86 0.45 -1.17 16 18 N -0.95 -61.61 13.97 21.65 0.30 -61.31 16 19 Si 0.96 46.31 24.94 68.60 1.71 48.03 16 20 H -0.27 -12.44 6.67 99.48 0.66 -11.78 16 21 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 22 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.11 4.05 5.81 86.49 0.50 4.56 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 1.41 7.69 -2.38 -0.02 1.40 16 30 H 0.12 1.30 7.94 -2.39 -0.02 1.28 16 31 H 0.12 0.92 5.93 -2.39 -0.01 0.90 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.92 6.73 -2.39 -0.02 1.91 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.03 1.31 3.08 -2.38 -0.01 1.30 16 39 H 0.07 2.40 6.46 -2.39 -0.02 2.39 16 40 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.08 2.51 7.52 -2.38 -0.02 2.49 16 42 H 0.05 2.12 7.00 -2.39 -0.02 2.10 16 Total: -1.00 -84.20 328.19 3.92 -80.28 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.95 Total: 6.35 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.12 Total: 14.04 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.82 Total: -111.56 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.03 Total: -37.13 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.71 Total: 48.03 kcal Total: -84.20 3.92 -80.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267100421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.463 kcal (2) G-P(sol) polarization free energy of solvation -84.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds