Wall clock time and date at job start Mon Mar 30 2020 01:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46962 * 2 1 4 4 C 1.42896 * 113.99457 * 179.97438 * 3 2 1 5 5 C 1.50707 * 109.46785 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00001 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99764 * 180.02562 * 5 4 3 8 8 C 1.46920 * 120.63419 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77542 * 126.43469 * 8 7 5 10 10 C 1.53032 * 109.31456 * 54.63964 * 9 8 7 11 11 C 1.53049 * 109.53522 * 298.63538 * 10 9 8 12 12 H 1.09004 * 109.49298 * 301.38097 * 11 10 9 13 13 N 1.46498 * 109.49816 * 181.31851 * 11 10 9 14 14 C 1.46502 * 119.99940 * 300.06202 * 13 11 10 15 15 C 1.36933 * 120.00452 * 120.06350 * 13 11 10 16 16 H 1.08005 * 119.99755 * 334.63920 * 15 13 11 17 17 C 1.38815 * 120.00292 * 154.63564 * 15 13 11 18 18 N 1.31622 * 119.99508 * 4.00743 * 17 15 13 19 19 Si 1.86797 * 120.00036 * 184.00458 * 17 15 13 20 20 H 1.48506 * 109.47095 * 90.00165 * 19 17 15 21 21 H 1.48502 * 109.47024 * 209.99822 * 19 17 15 22 22 H 1.48499 * 109.47257 * 330.00226 * 19 17 15 23 23 C 1.46939 * 120.60119 * 180.02562 * 7 5 4 24 24 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47149 * 300.00243 * 1 2 3 26 26 H 1.09003 * 109.46869 * 59.99940 * 1 2 3 27 27 H 1.08998 * 109.47149 * 239.99757 * 2 1 3 28 28 H 1.09008 * 109.46563 * 119.99401 * 2 1 3 29 29 H 1.09003 * 109.47540 * 59.99775 * 4 3 2 30 30 H 1.08997 * 109.47329 * 299.99614 * 4 3 2 31 31 H 1.09003 * 109.58558 * 6.65046 * 8 7 5 32 32 H 1.08996 * 109.59247 * 246.22210 * 8 7 5 33 33 H 1.09000 * 109.49677 * 294.68095 * 9 8 7 34 34 H 1.09000 * 109.49845 * 174.59416 * 9 8 7 35 35 H 1.08999 * 109.46177 * 178.61647 * 10 9 8 36 36 H 1.08995 * 109.46507 * 58.65428 * 10 9 8 37 37 H 1.08996 * 109.47202 * 264.48183 * 14 13 11 38 38 H 1.09004 * 109.47030 * 24.47903 * 14 13 11 39 39 H 1.08997 * 109.47686 * 144.47283 * 14 13 11 40 40 H 0.97005 * 119.99235 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.55988 * 113.76624 * 23 7 5 42 42 H 1.08992 * 109.61426 * 353.33088 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9611 3.7729 -0.0015 7 7 5.1210 3.2662 -0.0002 8 6 6.1723 2.2399 0.0008 9 6 7.1270 2.5108 -1.1662 10 6 7.6497 3.9459 -1.0699 11 6 6.4775 4.9251 -1.1674 12 1 5.9527 4.7715 -2.1104 13 7 6.9819 6.2992 -1.1068 14 6 7.7275 6.7546 0.0692 15 6 6.7565 7.1580 -2.1492 16 1 6.5936 6.7692 -3.1436 17 6 6.7373 8.5283 -1.9280 18 7 7.0136 9.0058 -0.7330 19 14 6.3195 9.6943 -3.3262 20 1 4.8533 9.9290 -3.3537 21 1 7.0236 10.9856 -3.1211 22 1 6.7491 9.0955 -4.6154 23 6 5.5148 4.6819 -0.0003 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8341 0.9763 -0.8891 30 1 3.8333 0.9767 0.8908 31 1 5.7212 1.2547 -0.1173 32 1 6.7229 2.2817 0.9406 33 1 6.5957 2.3795 -2.1088 34 1 7.9645 1.8147 -1.1202 35 1 8.3483 4.1334 -1.8853 36 1 8.1594 4.0836 -0.1164 37 1 7.0486 7.2583 0.7572 38 1 8.1793 5.8968 0.5676 39 1 8.5095 7.4471 -0.2420 40 1 6.9998 9.9633 -0.5784 41 1 6.0115 4.9225 0.9395 42 1 4.6305 5.3077 -0.1195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267100422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:29 Heat of formation + Delta-G solvation = -54.862964 kcal Electronic energy + Delta-G solvation = -21602.176874 eV Core-core repulsion = 18390.356769 eV Total energy + Delta-G solvation = -3211.820106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99180 -38.10680 -37.03302 -35.07148 -32.41715 -31.68404 -31.24991 -29.20408 -27.45484 -25.98960 -24.70313 -23.37390 -22.95252 -21.67029 -19.70616 -18.58913 -17.32731 -16.76001 -16.54888 -16.49042 -15.44719 -15.06376 -14.75241 -14.15228 -14.08236 -13.75126 -13.62312 -13.25365 -12.79172 -12.63789 -12.62462 -12.46717 -12.26460 -11.81457 -11.57107 -11.43733 -11.17831 -10.98466 -10.78207 -10.62944 -10.34288 -10.29765 -10.16440 -9.86022 -9.85019 -9.74330 -9.42947 -8.52690 -8.30700 -6.71726 -5.71462 -3.18408 2.80904 2.86532 3.41806 3.48122 3.48328 3.80888 4.50547 4.59816 4.80712 4.83516 4.94880 5.05479 5.05782 5.12394 5.15076 5.28809 5.41627 5.44846 5.55158 5.57996 5.69565 5.74396 5.91294 5.92979 6.00194 6.12716 6.23672 6.38562 6.50142 6.67146 6.81782 6.89563 6.97881 7.03418 7.50804 7.66294 7.78829 7.87356 8.41605 8.46150 9.27829 9.88085 10.37436 11.32903 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.004383 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.109922 B = 6386.513832 C = 7075.174954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.047 3.953 5 C 0.510 3.490 6 O -0.520 6.520 7 N -0.607 5.607 8 C 0.107 3.893 9 C -0.131 4.131 10 C -0.134 4.134 11 C 0.169 3.831 12 H 0.064 0.936 13 N -0.595 5.595 14 C 0.165 3.835 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.007 3.993 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.100 3.900 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.025 0.975 38 H -0.007 1.007 39 H 0.053 0.947 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -20.220 2.622 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.033 4.033 5 C 0.296 3.704 6 O -0.395 6.395 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.170 4.170 10 C -0.173 4.173 11 C 0.059 3.941 12 H 0.083 0.917 13 N -0.317 5.317 14 C 0.021 3.979 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.024 4.024 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.535 -19.362 2.679 19.864 hybrid contribution 0.067 0.399 -0.629 0.748 sum -3.468 -18.964 2.050 19.387 Atomic orbital electron populations 1.21729 0.93486 1.02070 1.03555 1.22532 0.95974 0.83631 1.00004 1.88047 1.18798 1.26043 1.95361 1.22257 0.83574 0.95426 1.02023 1.20163 0.82644 0.90223 0.77399 1.90735 1.48834 1.51662 1.48260 1.48254 1.04515 1.08388 1.73142 1.21749 0.89762 0.90595 0.99496 1.21910 0.98557 0.98423 0.98133 1.22096 0.99870 0.93216 1.02158 1.20639 0.91465 0.85854 0.96102 0.91749 1.43909 1.61328 1.07294 1.19181 1.20872 0.95215 0.93645 0.88211 1.19225 1.44075 0.87258 0.88039 0.91369 1.25170 1.00053 0.97420 0.96486 1.70087 1.52629 1.12147 1.20401 0.86253 0.78370 0.80428 0.81502 1.21274 1.21705 1.20542 1.22561 1.00683 0.78743 1.00368 0.91099 0.91690 0.91635 0.93289 0.93343 0.90509 0.90636 0.90691 0.91284 0.91713 0.91199 0.91689 0.92178 0.95698 0.98836 0.92852 0.93693 0.91982 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.52 6.66 37.16 0.25 0.77 16 3 O -0.36 -5.13 9.88 -55.14 -0.54 -5.67 16 4 C 0.05 0.57 4.76 36.01 0.17 0.74 16 5 C 0.51 8.67 7.77 -10.98 -0.09 8.58 16 6 O -0.52 -11.54 15.91 -14.35 -0.23 -11.77 16 7 N -0.61 -9.63 2.97 -172.74 -0.51 -10.15 16 8 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 9 C -0.13 -1.58 6.08 -26.62 -0.16 -1.74 16 10 C -0.13 -2.18 5.13 -26.69 -0.14 -2.31 16 11 C 0.17 3.46 2.74 -67.79 -0.19 3.28 16 12 H 0.06 1.40 7.88 -51.93 -0.41 0.99 16 13 N -0.60 -14.93 2.82 -173.32 -0.49 -15.42 16 14 C 0.16 4.05 7.88 59.85 0.47 4.53 16 15 C -0.26 -7.14 9.59 -15.06 -0.14 -7.29 16 16 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 17 C 0.01 0.20 5.38 -17.43 -0.09 0.10 16 18 N -0.91 -26.63 10.13 55.49 0.56 -26.06 16 19 Si 0.90 22.28 29.56 -169.99 -5.02 17.25 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.10 1.97 5.79 -3.68 -0.02 1.95 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 30 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.07 0.61 5.93 -51.93 -0.31 0.30 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 37 H 0.02 0.66 7.44 -51.93 -0.39 0.28 16 38 H -0.01 -0.14 6.46 -51.93 -0.34 -0.48 16 39 H 0.05 1.43 7.04 -51.93 -0.37 1.06 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 1.22 7.51 -51.93 -0.39 0.83 16 42 H 0.09 2.14 7.00 -51.93 -0.36 1.78 16 LS Contribution 332.01 15.07 5.00 5.00 Total: -1.00 -33.63 332.01 -7.88 -41.52 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -7.07 Total: -3.60 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 0.42 Total: 8.90 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.44 Total: -51.62 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.77 Total: -17.45 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.63 -7.88 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267100422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.346 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds