Wall clock time and date at job start Mon Mar 30 2020 01:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46962 * 2 1 4 4 C 1.42896 * 113.99457 * 179.97438 * 3 2 1 5 5 C 1.50707 * 109.46785 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00001 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99764 * 180.02562 * 5 4 3 8 8 C 1.46920 * 120.63419 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77542 * 126.43469 * 8 7 5 10 10 C 1.53032 * 109.31456 * 54.63964 * 9 8 7 11 11 C 1.53049 * 109.53522 * 298.63538 * 10 9 8 12 12 H 1.09004 * 109.49298 * 301.38097 * 11 10 9 13 13 N 1.46498 * 109.49816 * 181.31851 * 11 10 9 14 14 C 1.46502 * 119.99940 * 300.06202 * 13 11 10 15 15 C 1.36933 * 120.00452 * 120.06350 * 13 11 10 16 16 H 1.08005 * 119.99755 * 334.63920 * 15 13 11 17 17 C 1.38815 * 120.00292 * 154.63564 * 15 13 11 18 18 N 1.31622 * 119.99508 * 4.00743 * 17 15 13 19 19 Si 1.86797 * 120.00036 * 184.00458 * 17 15 13 20 20 H 1.48506 * 109.47095 * 90.00165 * 19 17 15 21 21 H 1.48502 * 109.47024 * 209.99822 * 19 17 15 22 22 H 1.48499 * 109.47257 * 330.00226 * 19 17 15 23 23 C 1.46939 * 120.60119 * 180.02562 * 7 5 4 24 24 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47149 * 300.00243 * 1 2 3 26 26 H 1.09003 * 109.46869 * 59.99940 * 1 2 3 27 27 H 1.08998 * 109.47149 * 239.99757 * 2 1 3 28 28 H 1.09008 * 109.46563 * 119.99401 * 2 1 3 29 29 H 1.09003 * 109.47540 * 59.99775 * 4 3 2 30 30 H 1.08997 * 109.47329 * 299.99614 * 4 3 2 31 31 H 1.09003 * 109.58558 * 6.65046 * 8 7 5 32 32 H 1.08996 * 109.59247 * 246.22210 * 8 7 5 33 33 H 1.09000 * 109.49677 * 294.68095 * 9 8 7 34 34 H 1.09000 * 109.49845 * 174.59416 * 9 8 7 35 35 H 1.08999 * 109.46177 * 178.61647 * 10 9 8 36 36 H 1.08995 * 109.46507 * 58.65428 * 10 9 8 37 37 H 1.08996 * 109.47202 * 264.48183 * 14 13 11 38 38 H 1.09004 * 109.47030 * 24.47903 * 14 13 11 39 39 H 1.08997 * 109.47686 * 144.47283 * 14 13 11 40 40 H 0.97005 * 119.99235 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.55988 * 113.76624 * 23 7 5 42 42 H 1.08992 * 109.61426 * 353.33088 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9611 3.7729 -0.0015 7 7 5.1210 3.2662 -0.0002 8 6 6.1723 2.2399 0.0008 9 6 7.1270 2.5108 -1.1662 10 6 7.6497 3.9459 -1.0699 11 6 6.4775 4.9251 -1.1674 12 1 5.9527 4.7715 -2.1104 13 7 6.9819 6.2992 -1.1068 14 6 7.7275 6.7546 0.0692 15 6 6.7565 7.1580 -2.1492 16 1 6.5936 6.7692 -3.1436 17 6 6.7373 8.5283 -1.9280 18 7 7.0136 9.0058 -0.7330 19 14 6.3195 9.6943 -3.3262 20 1 4.8533 9.9290 -3.3537 21 1 7.0236 10.9856 -3.1211 22 1 6.7491 9.0955 -4.6154 23 6 5.5148 4.6819 -0.0003 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8341 0.9763 -0.8891 30 1 3.8333 0.9767 0.8908 31 1 5.7212 1.2547 -0.1173 32 1 6.7229 2.2817 0.9406 33 1 6.5957 2.3795 -2.1088 34 1 7.9645 1.8147 -1.1202 35 1 8.3483 4.1334 -1.8853 36 1 8.1594 4.0836 -0.1164 37 1 7.0486 7.2583 0.7572 38 1 8.1793 5.8968 0.5676 39 1 8.5095 7.4471 -0.2420 40 1 6.9998 9.9633 -0.5784 41 1 6.0115 4.9225 0.9395 42 1 4.6305 5.3077 -0.1195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267100422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:29 Heat of formation + Delta-G solvation = -77.394130 kcal Electronic energy + Delta-G solvation = -21603.153899 eV Core-core repulsion = 18390.356769 eV Total energy + Delta-G solvation = -3212.797130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28151 -39.25728 -38.32828 -36.78218 -34.05349 -32.81725 -32.43073 -30.77605 -28.61984 -28.07184 -25.95574 -25.08101 -23.65773 -23.04753 -21.21472 -19.93369 -18.83369 -18.38731 -17.61942 -17.39744 -17.02870 -16.56459 -16.01131 -15.72319 -15.26388 -15.20858 -15.03174 -14.42649 -14.32207 -14.01088 -13.78442 -13.70954 -13.44946 -13.22436 -12.97035 -12.77559 -12.50861 -12.30809 -12.20581 -12.16996 -12.09957 -12.08130 -11.74693 -11.65034 -11.37878 -10.76594 -10.65227 -10.63490 -9.71324 -8.74918 -7.87247 -5.35798 1.41588 1.45441 1.52429 1.55549 1.73074 2.46851 2.90364 3.27973 3.55709 3.63557 3.98952 4.06451 4.09775 4.18640 4.19839 4.25980 4.31626 4.37051 4.38199 4.53344 4.61711 4.70961 4.80616 4.83056 4.90073 4.95533 5.04829 5.06379 5.17254 5.28121 5.33106 5.43030 5.48391 5.58068 5.61563 5.77083 6.14658 6.32360 6.47052 7.13858 7.16992 7.84959 8.27692 9.15446 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.004383 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.109922 B = 6386.513832 C = 7075.174954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.056 3.944 5 C 0.498 3.502 6 O -0.589 6.589 7 N -0.604 5.604 8 C 0.100 3.900 9 C -0.123 4.123 10 C -0.124 4.124 11 C 0.167 3.833 12 H 0.043 0.957 13 N -0.613 5.613 14 C 0.184 3.816 15 C -0.268 4.268 16 H 0.068 0.932 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.291 1.291 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.114 3.886 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.064 0.936 37 H -0.007 1.007 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.248 0.752 41 H 0.060 0.940 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 -24.134 2.376 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.023 4.023 5 C 0.287 3.713 6 O -0.469 6.469 7 N -0.338 5.338 8 C -0.020 4.020 9 C -0.161 4.161 10 C -0.163 4.163 11 C 0.059 3.941 12 H 0.062 0.938 13 N -0.336 5.336 14 C 0.039 3.961 15 C -0.398 4.398 16 H 0.085 0.915 17 C -0.244 4.244 18 N -0.583 5.583 19 Si 0.795 3.205 20 H -0.218 1.218 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.011 4.011 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.012 0.988 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.594 -23.363 2.424 23.631 hybrid contribution -0.238 1.529 -0.548 1.642 sum -2.832 -21.834 1.876 22.097 Atomic orbital electron populations 1.21795 0.93607 1.03495 1.02187 1.22804 0.96018 0.81834 1.02030 1.88010 1.19908 1.29086 1.95803 1.22337 0.83342 0.91229 1.05390 1.21286 0.82038 0.92304 0.75671 1.90705 1.50768 1.54040 1.51357 1.48303 1.05760 1.07443 1.72301 1.22200 0.88690 0.91016 1.00132 1.21902 1.00019 0.95745 0.98466 1.21938 0.97469 0.94944 1.01968 1.20802 0.93264 0.84717 0.95286 0.93831 1.44133 1.62066 1.08848 1.18598 1.20535 0.93689 0.94194 0.87654 1.19544 1.43231 0.88107 0.88952 0.91465 1.25920 1.00586 0.99017 0.98875 1.70264 1.53928 1.11950 1.22122 0.85264 0.77479 0.78371 0.79342 1.21798 1.21540 1.19118 1.21980 0.98154 0.81234 0.99744 0.88233 0.92988 0.93124 0.91256 0.91072 0.86990 0.86687 0.85994 0.89388 0.91807 0.87025 0.92645 0.91757 0.98839 0.95120 0.95618 0.94225 0.92164 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.41 -10.72 9.88 -129.94 -1.28 -12.00 16 4 C 0.06 1.15 4.76 71.24 0.34 1.49 16 5 C 0.50 16.52 7.77 87.66 0.68 17.20 16 6 O -0.59 -27.32 15.91 16.02 0.25 -27.06 16 7 N -0.60 -18.22 2.97 -818.83 -2.43 -20.65 16 8 C 0.10 1.77 6.34 86.36 0.55 2.32 16 9 C -0.12 -2.38 6.08 30.67 0.19 -2.20 16 10 C -0.12 -3.77 5.13 30.62 0.16 -3.61 16 11 C 0.17 6.94 2.74 45.09 0.12 7.07 16 12 H 0.04 1.95 7.88 -2.38 -0.02 1.94 16 13 N -0.61 -31.71 2.82 -702.25 -1.98 -33.70 16 14 C 0.18 9.31 7.88 127.77 1.01 10.31 16 15 C -0.27 -15.41 9.59 84.03 0.81 -14.60 16 16 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 17 C -0.05 -2.86 5.38 84.86 0.46 -2.40 16 18 N -0.94 -57.10 10.13 21.65 0.22 -56.88 16 19 Si 0.97 47.03 29.56 68.60 2.03 49.06 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C 0.11 4.61 5.79 86.37 0.50 5.12 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.11 1.52 7.69 -2.39 -0.02 1.51 16 30 H 0.12 1.47 7.94 -2.39 -0.02 1.45 16 31 H 0.12 1.11 5.93 -2.39 -0.01 1.10 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.91 6.71 -2.39 -0.02 1.89 16 37 H -0.01 -0.38 7.44 -2.39 -0.02 -0.40 16 38 H 0.03 1.29 6.46 -2.38 -0.02 1.27 16 39 H 0.03 1.41 7.04 -2.39 -0.02 1.39 16 40 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 41 H 0.06 2.42 7.51 -2.39 -0.02 2.41 16 42 H 0.04 2.04 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -80.79 332.01 3.81 -76.98 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 0.98 Total: 3.92 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.02 Total: 20.32 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.20 Total: -111.22 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.03 Total: -39.07 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -80.79 3.81 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267100422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.412 kcal (2) G-P(sol) polarization free energy of solvation -80.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds