Wall clock time and date at job start Mon Mar 30 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 113.99893 * 2 1 4 4 H 1.09000 * 109.47150 * 30.00433 * 3 2 1 5 5 C 1.50700 * 109.46974 * 150.00391 * 3 2 1 6 6 O 1.21278 * 120.00326 * 4.99812 * 5 3 2 7 7 N 1.34781 * 119.99773 * 185.00386 * 5 3 2 8 8 C 1.46505 * 119.99767 * 179.72608 * 7 5 3 9 9 C 1.52995 * 109.46907 * 180.27068 * 8 7 5 10 10 N 1.46494 * 109.47164 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99969 * 89.99892 * 10 9 8 12 12 C 1.36942 * 120.00497 * 270.00231 * 10 9 8 13 13 H 1.08002 * 119.99471 * 23.04131 * 12 10 9 14 14 C 1.38810 * 120.00233 * 203.04385 * 12 10 9 15 15 N 1.31619 * 120.00184 * 12.93955 * 14 12 10 16 16 Si 1.86796 * 119.99886 * 192.93330 * 14 12 10 17 17 H 1.48496 * 109.47393 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46790 * 120.00259 * 16 14 12 19 19 H 1.48502 * 109.47484 * 239.99978 * 16 14 12 20 20 C 1.53002 * 109.47060 * 269.99927 * 3 2 1 21 21 C 1.53777 * 113.61014 * 159.13703 * 20 3 2 22 22 C 1.53961 * 87.01875 * 220.04861 * 21 20 3 23 23 C 1.53778 * 87.11111 * 25.36601 * 22 21 20 24 24 H 1.08996 * 109.47814 * 60.00391 * 1 2 3 25 25 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47123 * 299.99228 * 1 2 3 27 27 H 0.96996 * 120.00239 * 359.97438 * 7 5 3 28 28 H 1.08996 * 109.46707 * 300.26741 * 8 7 5 29 29 H 1.09002 * 109.47181 * 60.26876 * 8 7 5 30 30 H 1.09000 * 109.47562 * 299.99673 * 9 8 7 31 31 H 1.09002 * 109.47357 * 59.99916 * 9 8 7 32 32 H 1.09001 * 109.46986 * 95.12260 * 11 10 9 33 33 H 1.08996 * 109.47110 * 215.12124 * 11 10 9 34 34 H 1.09000 * 109.47007 * 335.12722 * 11 10 9 35 35 H 0.96993 * 120.00374 * 179.97438 * 15 14 12 36 36 H 1.08997 * 112.85131 * 290.33401 * 20 3 2 37 37 H 1.09000 * 113.62179 * 334.56641 * 21 20 3 38 38 H 1.09000 * 113.61634 * 105.47731 * 21 20 3 39 39 H 1.08995 * 113.53970 * 270.81533 * 22 21 20 40 40 H 1.09004 * 113.74128 * 139.94308 * 22 21 20 41 41 H 1.08998 * 113.61855 * 220.09491 * 23 22 21 42 42 H 1.08995 * 113.61950 * 89.18249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3386 1.2639 0.7103 6 8 3.7897 0.2045 1.0913 7 7 4.0253 2.4040 0.9224 8 6 5.3140 2.3643 1.6182 9 6 5.8755 3.7828 1.7329 10 7 7.1638 3.7433 2.4293 11 6 8.4038 3.5773 1.6669 12 6 7.2091 3.8613 3.7928 13 1 6.3406 3.6139 4.3853 14 6 8.3711 4.2988 4.4134 15 7 9.3354 4.8391 3.6990 16 14 8.5661 4.1207 6.2626 17 1 7.3492 3.4865 6.8300 18 1 9.7488 3.2720 6.5561 19 1 8.7558 5.4617 6.8718 20 6 2.2176 1.7714 -1.4425 21 6 2.3475 3.2971 -1.5843 22 6 1.4918 3.1709 -2.8580 23 6 0.9119 1.8842 -2.2472 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.6647 3.2513 0.6175 28 1 5.1756 1.9466 2.6154 29 1 6.0109 1.7419 1.0570 30 1 6.0139 4.2006 0.7357 31 1 5.1786 4.4053 2.2941 32 1 8.8399 4.5557 1.4651 33 1 9.1077 2.9779 2.2440 34 1 8.1863 3.0751 0.7242 35 1 10.1472 5.1452 4.1327 36 1 3.0015 1.2166 -1.9579 37 1 1.8596 3.8532 -0.7839 38 1 3.3671 3.6327 -1.7738 39 1 2.0778 2.9999 -3.7610 40 1 0.7578 3.9683 -2.9744 41 1 0.7742 1.0808 -2.9708 42 1 0.0308 2.0533 -1.6282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267208898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:25 Heat of formation + Delta-G solvation = -38.083229 kcal Electronic energy + Delta-G solvation = -21225.518131 eV Core-core repulsion = 18014.425649 eV Total energy + Delta-G solvation = -3211.092482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42747 -38.49015 -37.10060 -35.97771 -34.10790 -31.44464 -30.07986 -27.82654 -26.63810 -25.88814 -25.79621 -24.07712 -22.78746 -20.68731 -20.16677 -19.78476 -17.47178 -16.88782 -16.63384 -16.33763 -15.69199 -15.22596 -14.74837 -14.70128 -14.31491 -13.97481 -13.56459 -13.27669 -13.16243 -12.79366 -12.49784 -12.39869 -12.29292 -12.09326 -11.69068 -11.20168 -11.14205 -10.88853 -10.86522 -10.76964 -10.60796 -10.58193 -10.33533 -9.97153 -9.92958 -9.88171 -9.24995 -8.68990 -8.56384 -6.79624 -5.74241 -3.22358 2.80735 3.00218 3.38353 3.45915 3.48414 3.84185 4.24630 4.38174 4.42079 4.50553 4.63534 4.72353 4.95508 5.05668 5.15050 5.19953 5.35357 5.39801 5.41256 5.50928 5.56662 5.61321 5.63175 5.70223 5.81667 5.86861 5.91616 6.14024 6.25712 6.60716 6.65552 6.76404 6.83182 6.96119 7.36836 7.71051 7.76439 7.80490 8.36952 8.47806 9.21212 9.83610 10.31616 11.30635 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003729 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.825447 B = 7506.977817 C = 8076.933710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.355 6.355 3 C 0.083 3.917 4 H 0.083 0.917 5 C 0.509 3.491 6 O -0.524 6.524 7 N -0.721 5.721 8 C 0.095 3.905 9 C 0.144 3.856 10 N -0.597 5.597 11 C 0.161 3.839 12 C -0.259 4.259 13 H 0.069 0.931 14 C 0.004 3.996 15 N -0.906 5.906 16 Si 0.905 3.095 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.290 1.290 20 C -0.128 4.128 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.395 0.605 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.042 0.958 34 H -0.001 1.001 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.407 -2.482 -12.733 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.273 6.273 3 C 0.021 3.979 4 H 0.101 0.899 5 C 0.293 3.707 6 O -0.399 6.399 7 N -0.374 5.374 8 C -0.031 4.031 9 C 0.016 3.984 10 N -0.320 5.320 11 C 0.016 3.984 12 C -0.389 4.389 13 H 0.087 0.913 14 C -0.195 4.195 15 N -0.551 5.551 16 Si 0.735 3.265 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.217 1.217 20 C -0.147 4.147 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.173 4.173 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.229 0.771 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.748 -3.363 -12.378 21.898 hybrid contribution -0.142 0.490 0.897 1.032 sum -17.890 -2.873 -11.481 21.450 Atomic orbital electron populations 1.23047 0.81103 1.03165 1.00240 1.88042 1.19299 1.25089 1.94830 1.22011 0.93880 0.86628 0.95392 0.89875 1.20302 0.86042 0.84505 0.79876 1.90720 1.69217 1.29840 1.50130 1.46050 1.22854 1.08742 1.59743 1.22445 0.82015 1.02057 0.96552 1.20831 0.89378 0.92049 0.96168 1.43791 0.99933 1.84523 1.03755 1.20838 0.87528 0.98918 0.91074 1.19241 0.99356 1.38567 0.81699 0.91288 1.25023 0.97874 0.98538 0.98015 1.70078 1.07791 1.43023 1.34210 0.86174 0.77793 0.77309 0.85209 1.20243 1.21526 1.21688 1.23037 0.99861 0.97082 0.94673 1.23061 1.01455 0.94786 0.98626 1.22809 0.99386 0.97847 0.97515 1.22993 0.96614 0.98390 0.99279 0.93182 0.89398 0.94042 0.77102 0.91538 0.92188 0.94084 0.92975 0.94860 0.93939 0.98251 0.93744 0.88047 0.89641 0.90367 0.89975 0.91181 0.91045 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.58 101.05 1.07 1.25 16 2 O -0.36 -4.77 9.85 -55.09 -0.54 -5.31 16 3 C 0.08 0.98 2.44 -27.88 -0.07 0.91 16 4 H 0.08 0.79 7.62 -51.93 -0.40 0.39 16 5 C 0.51 8.20 7.18 -10.98 -0.08 8.12 16 6 O -0.52 -11.11 16.51 -14.30 -0.24 -11.34 16 7 N -0.72 -10.62 5.45 -60.29 -0.33 -10.95 16 8 C 0.09 1.77 6.00 -4.04 -0.02 1.75 16 9 C 0.14 2.85 5.76 -4.05 -0.02 2.82 16 10 N -0.60 -15.01 2.92 -181.12 -0.53 -15.54 16 11 C 0.16 3.99 8.98 59.85 0.54 4.52 16 12 C -0.26 -7.15 9.65 -15.06 -0.15 -7.30 16 13 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 14 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 15 N -0.91 -26.45 10.71 55.49 0.59 -25.86 16 16 Si 0.91 22.01 29.57 -169.99 -5.03 16.99 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 C -0.13 -1.22 3.32 -89.80 -0.30 -1.51 16 21 C -0.14 -1.08 6.18 -25.83 -0.16 -1.24 16 22 C -0.14 -0.93 8.09 -25.83 -0.21 -1.14 16 23 C -0.14 -0.99 6.14 -25.92 -0.16 -1.15 16 24 H 0.05 0.34 5.04 -51.93 -0.26 0.08 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 27 H 0.40 4.52 7.05 -40.82 -0.29 4.24 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 33 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 34 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 0.56 7.98 -51.93 -0.41 0.14 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.52 6.49 -51.93 -0.34 0.18 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -33.69 338.14 -7.68 -41.37 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.06 Total: -1.52 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.35 Total: 7.07 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.26 Total: -52.34 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.78 Total: -16.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.69 -7.68 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.286 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds