Wall clock time and date at job start Mon Mar 30 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 113.99893 * 2 1 4 4 H 1.09000 * 109.47150 * 30.00433 * 3 2 1 5 5 C 1.50700 * 109.46974 * 150.00391 * 3 2 1 6 6 O 1.21278 * 120.00326 * 4.99812 * 5 3 2 7 7 N 1.34781 * 119.99773 * 185.00386 * 5 3 2 8 8 C 1.46505 * 119.99767 * 179.72608 * 7 5 3 9 9 C 1.52995 * 109.46907 * 180.27068 * 8 7 5 10 10 N 1.46494 * 109.47164 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99969 * 89.99892 * 10 9 8 12 12 C 1.36942 * 120.00497 * 270.00231 * 10 9 8 13 13 H 1.08002 * 119.99471 * 23.04131 * 12 10 9 14 14 C 1.38810 * 120.00233 * 203.04385 * 12 10 9 15 15 N 1.31619 * 120.00184 * 12.93955 * 14 12 10 16 16 Si 1.86796 * 119.99886 * 192.93330 * 14 12 10 17 17 H 1.48496 * 109.47393 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46790 * 120.00259 * 16 14 12 19 19 H 1.48502 * 109.47484 * 239.99978 * 16 14 12 20 20 C 1.53002 * 109.47060 * 269.99927 * 3 2 1 21 21 C 1.53777 * 113.61014 * 159.13703 * 20 3 2 22 22 C 1.53961 * 87.01875 * 220.04861 * 21 20 3 23 23 C 1.53778 * 87.11111 * 25.36601 * 22 21 20 24 24 H 1.08996 * 109.47814 * 60.00391 * 1 2 3 25 25 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47123 * 299.99228 * 1 2 3 27 27 H 0.96996 * 120.00239 * 359.97438 * 7 5 3 28 28 H 1.08996 * 109.46707 * 300.26741 * 8 7 5 29 29 H 1.09002 * 109.47181 * 60.26876 * 8 7 5 30 30 H 1.09000 * 109.47562 * 299.99673 * 9 8 7 31 31 H 1.09002 * 109.47357 * 59.99916 * 9 8 7 32 32 H 1.09001 * 109.46986 * 95.12260 * 11 10 9 33 33 H 1.08996 * 109.47110 * 215.12124 * 11 10 9 34 34 H 1.09000 * 109.47007 * 335.12722 * 11 10 9 35 35 H 0.96993 * 120.00374 * 179.97438 * 15 14 12 36 36 H 1.08997 * 112.85131 * 290.33401 * 20 3 2 37 37 H 1.09000 * 113.62179 * 334.56641 * 21 20 3 38 38 H 1.09000 * 113.61634 * 105.47731 * 21 20 3 39 39 H 1.08995 * 113.53970 * 270.81533 * 22 21 20 40 40 H 1.09004 * 113.74128 * 139.94308 * 22 21 20 41 41 H 1.08998 * 113.61855 * 220.09491 * 23 22 21 42 42 H 1.08995 * 113.61950 * 89.18249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3386 1.2639 0.7103 6 8 3.7897 0.2045 1.0913 7 7 4.0253 2.4040 0.9224 8 6 5.3140 2.3643 1.6182 9 6 5.8755 3.7828 1.7329 10 7 7.1638 3.7433 2.4293 11 6 8.4038 3.5773 1.6669 12 6 7.2091 3.8613 3.7928 13 1 6.3406 3.6139 4.3853 14 6 8.3711 4.2988 4.4134 15 7 9.3354 4.8391 3.6990 16 14 8.5661 4.1207 6.2626 17 1 7.3492 3.4865 6.8300 18 1 9.7488 3.2720 6.5561 19 1 8.7558 5.4617 6.8718 20 6 2.2176 1.7714 -1.4425 21 6 2.3475 3.2971 -1.5843 22 6 1.4918 3.1709 -2.8580 23 6 0.9119 1.8842 -2.2472 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.6647 3.2513 0.6175 28 1 5.1756 1.9466 2.6154 29 1 6.0109 1.7419 1.0570 30 1 6.0139 4.2006 0.7357 31 1 5.1786 4.4053 2.2941 32 1 8.8399 4.5557 1.4651 33 1 9.1077 2.9779 2.2440 34 1 8.1863 3.0751 0.7242 35 1 10.1472 5.1452 4.1327 36 1 3.0015 1.2166 -1.9579 37 1 1.8596 3.8532 -0.7839 38 1 3.3671 3.6327 -1.7738 39 1 2.0778 2.9999 -3.7610 40 1 0.7578 3.9683 -2.9744 41 1 0.7742 1.0808 -2.9708 42 1 0.0308 2.0533 -1.6282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267208898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:25 Heat of formation + Delta-G solvation = -60.656102 kcal Electronic energy + Delta-G solvation = -21226.496964 eV Core-core repulsion = 18014.425649 eV Total energy + Delta-G solvation = -3212.071315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42789 -39.55964 -38.04595 -37.66689 -35.70214 -33.34626 -31.24501 -29.28468 -27.92169 -27.33175 -26.44197 -25.37699 -24.08962 -22.40396 -21.47208 -20.41794 -18.85755 -18.43555 -17.85515 -17.22185 -17.01499 -16.48306 -16.16471 -15.97391 -15.56013 -15.33960 -15.04539 -14.60930 -14.31227 -14.22575 -14.02916 -13.40818 -13.07591 -12.94142 -12.85740 -12.80867 -12.69072 -12.51170 -12.41667 -12.16117 -11.97756 -11.87446 -11.78829 -11.40974 -11.25194 -10.92384 -10.68115 -10.26746 -10.10136 -8.84450 -7.85736 -5.36109 1.44953 1.47655 1.54668 1.57436 1.87516 2.50259 2.96291 3.28581 3.45670 3.67340 3.74765 3.84402 3.91688 3.99233 4.10179 4.21186 4.28605 4.36845 4.54282 4.55631 4.65192 4.79965 4.80784 4.84888 4.90300 4.95728 5.03524 5.10419 5.13448 5.14943 5.28488 5.29848 5.45303 5.57080 5.61774 5.68818 6.08388 6.30303 6.57559 7.11974 7.23441 7.82349 8.25147 9.17614 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003729 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.825447 B = 7506.977817 C = 8076.933710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.393 6.393 3 C 0.091 3.909 4 H 0.114 0.886 5 C 0.503 3.497 6 O -0.583 6.583 7 N -0.703 5.703 8 C 0.114 3.886 9 C 0.148 3.852 10 N -0.616 5.616 11 C 0.174 3.826 12 C -0.268 4.268 13 H 0.070 0.930 14 C -0.049 4.049 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.269 1.269 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.415 0.585 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.030 0.970 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.881 -1.509 -13.427 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.311 6.311 3 C 0.030 3.970 4 H 0.132 0.868 5 C 0.290 3.710 6 O -0.462 6.462 7 N -0.358 5.358 8 C -0.013 4.013 9 C 0.021 3.979 10 N -0.340 5.340 11 C 0.029 3.971 12 C -0.398 4.398 13 H 0.088 0.912 14 C -0.244 4.244 15 N -0.582 5.582 16 Si 0.795 3.205 17 H -0.193 1.193 18 H -0.219 1.219 19 H -0.214 1.214 20 C -0.153 4.153 21 C -0.179 4.179 22 C -0.170 4.170 23 C -0.165 4.165 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.252 0.748 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.283 -2.358 -13.105 24.263 hybrid contribution 0.561 0.138 1.059 1.206 sum -19.723 -2.220 -12.046 23.217 Atomic orbital electron populations 1.23283 0.78770 1.04254 1.01825 1.87996 1.21921 1.26134 1.95086 1.22062 0.91521 0.87002 0.96418 0.86808 1.21242 0.87365 0.83531 0.78873 1.90690 1.70943 1.31957 1.52610 1.45790 1.21409 1.09740 1.58826 1.21907 0.83466 1.00718 0.95161 1.20948 0.87309 0.92525 0.97105 1.44028 1.01712 1.84696 1.03514 1.20596 0.87170 0.97529 0.91815 1.19534 0.99381 1.37701 0.83191 0.91245 1.25762 0.97819 0.98835 1.02004 1.70219 1.08109 1.44195 1.35643 0.85209 0.77606 0.77095 0.80557 1.19349 1.21939 1.21376 1.23041 1.00936 0.98222 0.93107 1.23148 1.01756 0.93133 0.99816 1.22780 0.99359 0.97906 0.96906 1.23010 0.95880 0.98691 0.98930 0.90945 0.88785 0.92958 0.74752 0.94431 0.93967 0.91429 0.92001 0.96865 0.96898 0.95111 0.94138 0.90320 0.87792 0.90856 0.90205 0.89576 0.91132 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.58 113.37 1.20 1.41 16 2 O -0.39 -10.12 9.85 -129.99 -1.28 -11.40 16 3 C 0.09 2.00 2.44 29.85 0.07 2.07 16 4 H 0.11 1.77 7.62 -2.39 -0.02 1.75 16 5 C 0.50 15.99 7.18 87.66 0.63 16.62 16 6 O -0.58 -25.33 16.51 15.97 0.26 -25.07 16 7 N -0.70 -19.86 5.45 -463.06 -2.52 -22.38 16 8 C 0.11 4.23 6.00 86.38 0.52 4.75 16 9 C 0.15 5.64 5.76 86.38 0.50 6.13 16 10 N -0.62 -30.83 2.92 -726.94 -2.12 -32.96 16 11 C 0.17 8.66 8.98 127.77 1.15 9.81 16 12 C -0.27 -14.79 9.65 84.03 0.81 -13.98 16 13 H 0.07 3.75 7.86 -2.91 -0.02 3.72 16 14 C -0.05 -2.75 5.10 84.86 0.43 -2.32 16 15 N -0.94 -55.33 10.71 21.65 0.23 -55.10 16 16 Si 0.97 45.51 29.57 68.60 2.03 47.54 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 C -0.13 -2.29 3.32 -10.27 -0.03 -2.32 16 21 C -0.14 -1.72 6.18 31.18 0.19 -1.52 16 22 C -0.13 -1.34 8.09 31.18 0.25 -1.09 16 23 C -0.13 -1.47 6.14 31.12 0.19 -1.28 16 24 H 0.07 0.74 5.04 -2.39 -0.01 0.73 16 25 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.05 0.67 8.09 -2.39 -0.02 0.65 16 27 H 0.41 8.42 7.05 -92.71 -0.65 7.76 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 32 H 0.01 0.70 7.34 -2.39 -0.02 0.68 16 33 H 0.01 0.68 7.34 -2.39 -0.02 0.66 16 34 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 35 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 0.90 7.98 -2.39 -0.02 0.88 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 0.64 8.14 -2.38 -0.02 0.63 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.82 6.49 -2.39 -0.02 0.81 16 Total: -1.00 -74.73 338.14 2.85 -71.88 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.34 Total: 9.20 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 5.91 Total: 18.28 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.41 Total: -110.43 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.02 Total: -36.46 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.73 2.85 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.223 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds