Wall clock time and date at job start Mon Mar 30 2020 01:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00336 * 2 1 4 4 H 1.09001 * 109.46768 * 30.00606 * 3 2 1 5 5 C 1.50699 * 109.47474 * 270.00631 * 3 2 1 6 6 O 1.21284 * 119.99939 * 354.99564 * 5 3 2 7 7 N 1.34777 * 120.00149 * 174.71807 * 5 3 2 8 8 C 1.46502 * 120.00077 * 180.27331 * 7 5 3 9 9 C 1.53001 * 109.46850 * 180.02562 * 8 7 5 10 10 N 1.46502 * 109.46850 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99540 * 89.99868 * 10 9 8 12 12 C 1.36927 * 120.00295 * 270.00180 * 10 9 8 13 13 H 1.07996 * 120.00629 * 142.04453 * 12 10 9 14 14 C 1.38820 * 119.99785 * 322.04377 * 12 10 9 15 15 N 1.31618 * 119.99686 * 157.02634 * 14 12 10 16 16 Si 1.86795 * 119.99978 * 337.01969 * 14 12 10 17 17 H 1.48496 * 109.47118 * 95.68083 * 16 14 12 18 18 H 1.48505 * 109.47381 * 215.68284 * 16 14 12 19 19 H 1.48501 * 109.47346 * 335.68453 * 16 14 12 20 20 C 1.52999 * 109.47333 * 150.00190 * 3 2 1 21 21 C 1.53778 * 113.61322 * 37.50110 * 20 3 2 22 22 C 1.53771 * 87.08328 * 220.01789 * 21 20 3 23 23 C 1.53776 * 87.08314 * 25.43371 * 22 21 20 24 24 H 1.09000 * 109.47871 * 59.99627 * 1 2 3 25 25 H 1.09006 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47068 * 299.99402 * 1 2 3 27 27 H 0.96998 * 119.99946 * 0.28295 * 7 5 3 28 28 H 1.09003 * 109.47144 * 300.00398 * 8 7 5 29 29 H 1.09002 * 109.46622 * 60.00373 * 8 7 5 30 30 H 1.09003 * 109.47160 * 299.99884 * 9 8 7 31 31 H 1.09002 * 109.47274 * 60.00052 * 9 8 7 32 32 H 1.08994 * 109.46961 * 85.65669 * 11 10 9 33 33 H 1.09008 * 109.46939 * 205.65210 * 11 10 9 34 34 H 1.09000 * 109.47496 * 325.65258 * 11 10 9 35 35 H 0.97006 * 119.99307 * 180.02562 * 15 14 12 36 36 H 1.09002 * 112.85058 * 168.80927 * 20 3 2 37 37 H 1.09000 * 113.61369 * 334.56941 * 21 20 3 38 38 H 1.09005 * 113.61521 * 105.46937 * 21 20 3 39 39 H 1.09002 * 113.61561 * 270.88071 * 22 21 20 40 40 H 1.09000 * 113.69471 * 139.99443 * 22 21 20 41 41 H 1.09003 * 113.61774 * 220.02007 * 23 22 21 42 42 H 1.09000 * 113.61645 * 89.11143 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9790 1.0107 -2.3413 7 7 2.6534 3.0144 -1.6686 8 6 2.8462 3.4626 -3.0500 9 6 3.3468 4.9084 -3.0519 10 7 3.5402 5.3564 -4.4332 11 6 2.4383 5.9953 -5.1571 12 6 4.7508 5.1779 -5.0478 13 1 4.7914 4.9091 -6.0930 14 6 5.9259 5.3426 -4.3273 15 7 7.0340 4.7599 -4.7336 16 14 5.9345 6.3911 -2.7814 17 1 5.7611 5.5199 -1.5914 18 1 7.2275 7.1146 -2.6811 19 1 4.8217 7.3725 -2.8427 20 6 3.3589 1.2632 0.7212 21 6 4.1598 -0.0223 0.4550 22 6 4.5529 0.0084 1.9413 23 6 3.2603 0.8047 2.1858 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 2.8418 3.6172 -0.9324 28 1 3.5807 2.8235 -3.5402 29 1 1.8989 3.4050 -3.5862 30 1 2.6127 5.5477 -2.5616 31 1 4.2942 4.9656 -2.5157 32 1 2.4272 7.0621 -4.9338 33 1 2.5749 5.8498 -6.2287 34 1 1.4932 5.5494 -4.8474 35 1 7.8550 4.8747 -4.2298 36 1 3.9391 2.1762 0.5877 37 1 3.5381 -0.8761 0.1853 38 1 5.0018 0.1202 -0.2224 39 1 5.4608 0.5776 2.1411 40 1 4.5567 -0.9738 2.4138 41 1 3.3760 1.6149 2.9057 42 1 2.3927 0.1770 2.3892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267208899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:27 Heat of formation + Delta-G solvation = -36.861723 kcal Electronic energy + Delta-G solvation = -21620.366917 eV Core-core repulsion = 18409.327404 eV Total energy + Delta-G solvation = -3211.039513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29389 -38.35768 -36.98772 -36.20226 -34.05257 -31.67644 -30.28720 -28.25909 -26.40581 -26.08878 -25.61255 -24.05603 -22.66596 -20.93439 -20.22062 -19.41890 -17.60008 -16.77643 -16.52398 -16.29878 -15.59019 -15.29133 -15.09479 -14.65511 -14.34715 -13.84837 -13.66655 -13.38280 -13.02249 -12.75952 -12.57097 -12.43378 -12.26212 -11.94684 -11.87157 -11.57935 -11.53580 -11.06822 -10.71398 -10.66321 -10.59127 -10.50713 -10.41889 -10.25646 -10.00366 -9.66698 -9.08745 -8.69657 -8.54216 -6.91603 -6.05462 -3.47939 2.81961 3.19916 3.26810 3.40009 3.45020 3.73655 4.40360 4.45500 4.58640 4.61929 4.78843 4.89017 5.03627 5.09609 5.15562 5.27162 5.34297 5.38637 5.55113 5.58202 5.67605 5.73759 5.79722 5.80354 5.81420 6.05275 6.11228 6.14800 6.23193 6.46902 6.48015 6.62660 6.67101 6.71323 6.84187 6.95423 7.78244 7.98459 8.33010 8.49459 8.90677 9.63781 10.03498 11.09882 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.005223 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.712368 B = 5359.466189 C = 6159.762705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.084 3.916 4 H 0.084 0.916 5 C 0.487 3.513 6 O -0.528 6.528 7 N -0.725 5.725 8 C 0.100 3.900 9 C 0.129 3.871 10 N -0.607 5.607 11 C 0.124 3.876 12 C -0.275 4.275 13 H 0.080 0.920 14 C 0.037 3.963 15 N -0.894 5.894 16 Si 0.878 3.122 17 H -0.286 1.286 18 H -0.299 1.299 19 H -0.269 1.269 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.129 4.129 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.394 0.606 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.009 0.991 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 -5.550 15.529 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.022 3.978 4 H 0.102 0.898 5 C 0.272 3.728 6 O -0.404 6.404 7 N -0.378 5.378 8 C -0.025 4.025 9 C 0.002 3.998 10 N -0.331 5.331 11 C -0.021 4.021 12 C -0.404 4.404 13 H 0.098 0.902 14 C -0.164 4.164 15 N -0.534 5.534 16 Si 0.708 3.292 17 H -0.214 1.214 18 H -0.227 1.227 19 H -0.194 1.194 20 C -0.131 4.131 21 C -0.165 4.165 22 C -0.179 4.179 23 C -0.166 4.166 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.227 0.773 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.780 -6.281 14.806 19.362 hybrid contribution 0.053 1.169 1.122 1.621 sum -10.727 -5.112 15.929 19.873 Atomic orbital electron populations 1.22840 0.80971 1.03003 0.99895 1.87950 1.19640 1.25012 1.94401 1.21877 0.96742 0.86527 0.92669 0.89819 1.21236 0.77747 0.82013 0.91837 1.90701 1.50030 1.53581 1.46050 1.46161 1.67596 1.13911 1.10104 1.22251 1.01112 0.98556 0.80591 1.21329 0.98891 0.91292 0.88263 1.43911 1.10822 1.67291 1.11041 1.21118 0.89605 0.94690 0.96677 1.18817 0.81164 1.43129 0.97263 0.90211 1.25496 0.95165 0.97677 0.98069 1.69893 1.00828 1.41791 1.40924 0.86923 0.76780 0.82016 0.83510 1.21398 1.22704 1.19429 1.22740 0.93735 1.00412 0.96218 1.22826 0.99557 0.97800 0.96345 1.22789 0.97511 1.00487 0.97138 1.22894 0.98853 0.99923 0.94923 0.93686 0.89384 0.94183 0.77281 0.90607 0.92363 0.93844 0.92399 0.97286 0.93371 0.95373 0.92609 0.87650 0.88625 0.91431 0.90288 0.91442 0.91517 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.40 16 2 O -0.35 -4.71 8.00 -55.09 -0.44 -5.15 16 3 C 0.08 1.05 2.52 -27.88 -0.07 0.98 16 4 H 0.08 0.83 7.79 -51.93 -0.40 0.42 16 5 C 0.49 8.12 7.12 -10.99 -0.08 8.04 16 6 O -0.53 -11.14 16.51 -14.31 -0.24 -11.38 16 7 N -0.72 -11.67 5.48 -60.29 -0.33 -12.00 16 8 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 9 C 0.13 2.68 4.65 -4.04 -0.02 2.66 16 10 N -0.61 -14.38 2.47 -181.11 -0.45 -14.83 16 11 C 0.12 2.46 10.70 59.85 0.64 3.10 16 12 C -0.28 -7.69 9.88 -15.06 -0.15 -7.84 16 13 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 14 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 15 N -0.89 -27.09 13.97 55.49 0.78 -26.31 16 16 Si 0.88 21.56 25.10 -169.99 -4.27 17.29 16 17 H -0.29 -6.63 6.68 56.52 0.38 -6.25 16 18 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.11 -1.29 3.55 -89.81 -0.32 -1.61 16 21 C -0.13 -1.60 7.48 -25.93 -0.19 -1.79 16 22 C -0.14 -1.40 8.08 -25.93 -0.21 -1.61 16 23 C -0.13 -1.20 7.54 -25.92 -0.20 -1.39 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.32 8.09 -51.92 -0.42 -0.10 16 27 H 0.39 5.14 8.34 -40.82 -0.34 4.80 16 28 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.06 1.30 3.38 -51.93 -0.18 1.13 16 32 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.05 0.94 8.01 -51.92 -0.42 0.53 16 34 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.11 1.17 7.96 -51.93 -0.41 0.76 16 37 H 0.10 1.30 6.98 -51.93 -0.36 0.94 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.79 7.77 -51.93 -0.40 0.39 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -33.34 340.17 -6.60 -39.94 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.16 Total: 2.45 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 0.38 Total: 4.86 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.00 Total: -53.15 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.68 Total: -16.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.27 Total: 17.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.34 -6.60 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.079 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds