Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00336 * 2 1 4 4 H 1.09001 * 109.46768 * 30.00606 * 3 2 1 5 5 C 1.50699 * 109.47474 * 270.00631 * 3 2 1 6 6 O 1.21284 * 119.99939 * 354.99564 * 5 3 2 7 7 N 1.34777 * 120.00149 * 174.71807 * 5 3 2 8 8 C 1.46502 * 120.00077 * 180.27331 * 7 5 3 9 9 C 1.53001 * 109.46850 * 180.02562 * 8 7 5 10 10 N 1.46502 * 109.46850 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99540 * 89.99868 * 10 9 8 12 12 C 1.36927 * 120.00295 * 270.00180 * 10 9 8 13 13 H 1.07996 * 120.00629 * 142.04453 * 12 10 9 14 14 C 1.38820 * 119.99785 * 322.04377 * 12 10 9 15 15 N 1.31618 * 119.99686 * 157.02634 * 14 12 10 16 16 Si 1.86795 * 119.99978 * 337.01969 * 14 12 10 17 17 H 1.48496 * 109.47118 * 95.68083 * 16 14 12 18 18 H 1.48505 * 109.47381 * 215.68284 * 16 14 12 19 19 H 1.48501 * 109.47346 * 335.68453 * 16 14 12 20 20 C 1.52999 * 109.47333 * 150.00190 * 3 2 1 21 21 C 1.53778 * 113.61322 * 37.50110 * 20 3 2 22 22 C 1.53771 * 87.08328 * 220.01789 * 21 20 3 23 23 C 1.53776 * 87.08314 * 25.43371 * 22 21 20 24 24 H 1.09000 * 109.47871 * 59.99627 * 1 2 3 25 25 H 1.09006 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47068 * 299.99402 * 1 2 3 27 27 H 0.96998 * 119.99946 * 0.28295 * 7 5 3 28 28 H 1.09003 * 109.47144 * 300.00398 * 8 7 5 29 29 H 1.09002 * 109.46622 * 60.00373 * 8 7 5 30 30 H 1.09003 * 109.47160 * 299.99884 * 9 8 7 31 31 H 1.09002 * 109.47274 * 60.00052 * 9 8 7 32 32 H 1.08994 * 109.46961 * 85.65669 * 11 10 9 33 33 H 1.09008 * 109.46939 * 205.65210 * 11 10 9 34 34 H 1.09000 * 109.47496 * 325.65258 * 11 10 9 35 35 H 0.97006 * 119.99307 * 180.02562 * 15 14 12 36 36 H 1.09002 * 112.85058 * 168.80927 * 20 3 2 37 37 H 1.09000 * 113.61369 * 334.56941 * 21 20 3 38 38 H 1.09005 * 113.61521 * 105.46937 * 21 20 3 39 39 H 1.09002 * 113.61561 * 270.88071 * 22 21 20 40 40 H 1.09000 * 113.69471 * 139.99443 * 22 21 20 41 41 H 1.09003 * 113.61774 * 220.02007 * 23 22 21 42 42 H 1.09000 * 113.61645 * 89.11143 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9790 1.0107 -2.3413 7 7 2.6534 3.0144 -1.6686 8 6 2.8462 3.4626 -3.0500 9 6 3.3468 4.9084 -3.0519 10 7 3.5402 5.3564 -4.4332 11 6 2.4383 5.9953 -5.1571 12 6 4.7508 5.1779 -5.0478 13 1 4.7914 4.9091 -6.0930 14 6 5.9259 5.3426 -4.3273 15 7 7.0340 4.7599 -4.7336 16 14 5.9345 6.3911 -2.7814 17 1 5.7611 5.5199 -1.5914 18 1 7.2275 7.1146 -2.6811 19 1 4.8217 7.3725 -2.8427 20 6 3.3589 1.2632 0.7212 21 6 4.1598 -0.0223 0.4550 22 6 4.5529 0.0084 1.9413 23 6 3.2603 0.8047 2.1858 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 2.8418 3.6172 -0.9324 28 1 3.5807 2.8235 -3.5402 29 1 1.8989 3.4050 -3.5862 30 1 2.6127 5.5477 -2.5616 31 1 4.2942 4.9656 -2.5157 32 1 2.4272 7.0621 -4.9338 33 1 2.5749 5.8498 -6.2287 34 1 1.4932 5.5494 -4.8474 35 1 7.8550 4.8747 -4.2298 36 1 3.9391 2.1762 0.5877 37 1 3.5381 -0.8761 0.1853 38 1 5.0018 0.1202 -0.2224 39 1 5.4608 0.5776 2.1411 40 1 4.5567 -0.9738 2.4138 41 1 3.3760 1.6149 2.9057 42 1 2.3927 0.1770 2.3892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267208899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = -60.176749 kcal Electronic energy + Delta-G solvation = -21621.377933 eV Core-core repulsion = 18409.327404 eV Total energy + Delta-G solvation = -3212.050529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42671 -39.51124 -38.19052 -37.69969 -35.62692 -33.76752 -31.50826 -29.60296 -28.05718 -27.21024 -26.46568 -25.32896 -24.08006 -22.74560 -21.54930 -20.28037 -19.09403 -18.27194 -17.85871 -17.36026 -17.33510 -16.52269 -16.20981 -15.99401 -15.61175 -15.53665 -15.00251 -14.77970 -14.45931 -14.26753 -14.09669 -13.72185 -13.33558 -13.30339 -13.13948 -12.83107 -12.76191 -12.49929 -12.39865 -12.31744 -11.93927 -11.68485 -11.57550 -11.50399 -11.28286 -11.09746 -10.68709 -10.28633 -10.13030 -8.85888 -8.23418 -5.64944 1.27489 1.42355 1.52638 1.54356 2.01604 2.40255 2.76417 3.03318 3.39284 3.55550 3.72333 3.74710 3.92265 3.96898 4.08432 4.14683 4.21820 4.30414 4.47866 4.51222 4.55820 4.68887 4.76000 4.82719 4.86829 4.91168 4.97017 4.97929 5.09005 5.10409 5.11889 5.12347 5.31159 5.37841 5.62144 5.89284 6.01838 6.12834 6.54204 6.92324 7.21465 7.56216 7.96866 8.96241 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.005223 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.712368 B = 5359.466189 C = 6159.762705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.092 3.908 4 H 0.123 0.877 5 C 0.483 3.517 6 O -0.581 6.581 7 N -0.713 5.713 8 C 0.117 3.883 9 C 0.130 3.870 10 N -0.622 5.622 11 C 0.121 3.879 12 C -0.275 4.275 13 H 0.034 0.966 14 C -0.022 4.022 15 N -0.947 5.947 16 Si 0.950 3.050 17 H -0.260 1.260 18 H -0.307 1.307 19 H -0.253 1.253 20 C -0.116 4.116 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.111 4.111 24 H 0.027 0.973 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.414 0.586 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 -4.116 19.371 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.141 0.859 5 C 0.269 3.731 6 O -0.460 6.460 7 N -0.367 5.367 8 C -0.009 4.009 9 C 0.004 3.996 10 N -0.347 5.347 11 C -0.023 4.023 12 C -0.404 4.404 13 H 0.052 0.948 14 C -0.219 4.219 15 N -0.590 5.590 16 Si 0.776 3.224 17 H -0.187 1.187 18 H -0.236 1.236 19 H -0.177 1.177 20 C -0.135 4.135 21 C -0.182 4.182 22 C -0.172 4.172 23 C -0.148 4.148 24 H 0.046 0.954 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.250 0.750 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.730 -4.826 18.693 23.125 hybrid contribution 0.589 0.620 -0.207 0.880 sum -12.140 -4.207 18.486 22.512 Atomic orbital electron populations 1.23029 0.79540 1.04126 1.00533 1.87947 1.21332 1.25546 1.94202 1.21970 0.98248 0.87096 0.89628 0.85916 1.22196 0.76169 0.81290 0.93396 1.90678 1.52257 1.54932 1.48150 1.45968 1.67173 1.14413 1.09157 1.21772 0.99459 0.97313 0.82392 1.21413 0.99398 0.92124 0.86703 1.44055 1.10195 1.68137 1.12266 1.21238 0.89506 0.95552 0.95957 1.18670 0.83512 1.42399 0.95857 0.94789 1.26223 0.94512 0.98697 1.02489 1.70044 1.01761 1.43759 1.43457 0.85763 0.76701 0.80111 0.79791 1.18666 1.23569 1.17681 1.22859 0.92864 0.99872 0.97875 1.22863 0.99027 0.98308 0.98006 1.22782 0.98427 1.01379 0.94651 1.22825 0.98330 1.00235 0.93403 0.95425 0.88268 0.90966 0.74967 0.95600 0.92445 0.89481 0.93754 0.95641 0.94318 0.92331 0.92669 0.87049 0.90264 0.93831 0.89602 0.90626 0.89133 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.81 113.37 1.23 1.66 16 2 O -0.37 -9.33 8.00 -129.99 -1.04 -10.37 16 3 C 0.09 2.09 2.52 29.85 0.08 2.16 16 4 H 0.12 1.85 7.79 -2.39 -0.02 1.83 16 5 C 0.48 15.65 7.12 87.66 0.62 16.27 16 6 O -0.58 -25.04 16.51 15.95 0.26 -24.78 16 7 N -0.71 -21.67 5.48 -463.04 -2.54 -24.21 16 8 C 0.12 4.57 6.00 86.38 0.52 5.09 16 9 C 0.13 5.07 4.65 86.38 0.40 5.47 16 10 N -0.62 -28.94 2.47 -726.91 -1.79 -30.73 16 11 C 0.12 4.59 10.70 127.77 1.37 5.96 16 12 C -0.27 -15.78 9.88 84.04 0.83 -14.95 16 13 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 14 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 15 N -0.95 -59.50 13.97 21.65 0.30 -59.19 16 16 Si 0.95 43.92 25.10 68.60 1.72 45.64 16 17 H -0.26 -10.87 6.68 99.48 0.66 -10.21 16 18 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 19 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 20 C -0.12 -2.37 3.55 -10.27 -0.04 -2.41 16 21 C -0.14 -3.55 7.48 31.12 0.23 -3.31 16 22 C -0.14 -2.36 8.08 31.12 0.25 -2.11 16 23 C -0.11 -1.63 7.54 31.12 0.23 -1.40 16 24 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 27 H 0.41 9.32 8.34 -92.71 -0.77 8.54 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.04 1.87 3.38 -2.39 -0.01 1.86 16 32 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 1.50 8.01 -2.38 -0.02 1.48 16 34 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 36 H 0.11 2.14 7.96 -2.39 -0.02 2.12 16 37 H 0.08 2.19 6.98 -2.39 -0.02 2.17 16 38 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.30 7.77 -2.39 -0.02 1.28 16 Total: -1.00 -76.76 340.17 3.27 -73.49 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.18 Total: 18.54 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.17 Total: 11.60 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.03 Total: -114.13 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.78 Total: -35.14 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.72 Total: 45.64 kcal Total: -76.76 3.27 -73.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.313 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds