Wall clock time and date at job start Mon Mar 30 2020 00:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46512 * 109.46879 * 2 1 4 4 C 1.36931 * 119.99802 * 263.78850 * 3 2 1 5 5 H 1.08006 * 119.99963 * 142.61665 * 4 3 2 6 6 C 1.38815 * 120.00132 * 322.61765 * 4 3 2 7 7 N 1.31621 * 119.99999 * 157.39442 * 6 4 3 8 8 Si 1.86794 * 120.00038 * 337.38526 * 6 4 3 9 9 H 1.48505 * 109.47070 * 95.71794 * 8 6 4 10 10 H 1.48500 * 109.47491 * 215.71883 * 8 6 4 11 11 H 1.48498 * 109.47405 * 335.71826 * 8 6 4 12 12 C 1.46494 * 120.00032 * 83.78991 * 3 2 1 13 13 C 1.53004 * 109.47190 * 89.99663 * 12 3 2 14 14 N 1.46504 * 109.46841 * 179.97438 * 13 12 3 15 15 C 1.34774 * 119.99570 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00259 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00189 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.47497 * 54.99835 * 17 15 14 19 19 C 1.53093 * 109.47809 * 294.98177 * 17 15 14 20 20 C 1.53179 * 109.16078 * 182.40515 * 19 17 15 21 21 C 1.53176 * 109.03657 * 56.97808 * 20 19 17 22 22 C 1.53092 * 109.16321 * 303.01847 * 21 20 19 23 23 O 1.42898 * 109.48257 * 175.02522 * 17 15 14 24 24 H 1.09001 * 109.46827 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47031 * 299.99743 * 1 2 3 26 26 H 1.09001 * 109.47739 * 60.00102 * 1 2 3 27 27 H 1.09000 * 109.47031 * 240.00257 * 2 1 3 28 28 H 1.09001 * 109.47739 * 119.99898 * 2 1 3 29 29 H 0.97001 * 119.99824 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47281 * 209.99941 * 12 3 2 31 31 H 1.09004 * 109.47174 * 330.00294 * 12 3 2 32 32 H 1.08993 * 109.47236 * 300.00306 * 13 12 3 33 33 H 1.09004 * 109.46546 * 60.00247 * 13 12 3 34 34 H 0.96992 * 120.00352 * 359.97438 * 14 13 12 35 35 H 1.08996 * 109.52431 * 302.30688 * 19 17 15 36 36 H 1.08999 * 109.52514 * 62.49816 * 19 17 15 37 37 H 1.09005 * 109.54317 * 176.84796 * 20 19 17 38 38 H 1.08998 * 109.54638 * 297.02177 * 20 19 17 39 39 H 1.09005 * 109.52122 * 62.92763 * 21 20 19 40 40 H 1.09000 * 109.52432 * 183.11406 * 21 20 19 41 41 H 1.09002 * 109.47999 * 177.59145 * 22 21 20 42 42 H 1.08997 * 109.48262 * 297.61417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3674 1.9841 -1.1789 5 1 2.1494 3.0302 -1.3359 6 6 3.0015 1.2505 -2.1723 7 7 2.9449 1.6520 -3.4245 8 14 3.9353 -0.3062 -1.7320 9 1 3.0563 -1.4854 -1.9369 10 1 5.1347 -0.4261 -2.5993 11 1 4.3573 -0.2447 -0.3095 12 6 2.1330 2.1177 1.2612 13 6 3.5250 1.8960 1.8564 14 7 3.6399 2.6329 3.1174 15 6 4.7868 2.5853 3.8235 16 8 5.7240 1.9329 3.4149 17 6 4.9053 3.3438 5.1204 18 1 4.0956 3.0502 5.7884 19 6 4.8184 4.8468 4.8426 20 6 4.9998 5.6123 6.1569 21 6 6.3381 5.2139 6.7865 22 6 6.3663 3.6968 6.9892 23 8 6.1611 3.0457 5.7338 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3883 1.1396 -4.1186 30 1 1.9821 3.1811 1.0761 31 1 1.3776 1.7599 1.9609 32 1 3.6758 0.8326 2.0415 33 1 4.2804 2.2538 1.1568 34 1 2.8908 3.1556 3.4437 35 1 5.6030 5.1338 4.1426 36 1 3.8437 5.0825 4.4152 37 1 4.9949 6.6841 5.9582 38 1 4.1863 5.3642 6.8387 39 1 7.1535 5.5084 6.1258 40 1 6.4503 5.7122 7.7494 41 1 7.3331 3.4025 7.3976 42 1 5.5760 3.4079 7.6821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267239512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:45 Heat of formation + Delta-G solvation = -70.438260 kcal Electronic energy + Delta-G solvation = -21282.149211 eV Core-core repulsion = 18069.653710 eV Total energy + Delta-G solvation = -3212.495501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22078 -38.43323 -36.56391 -34.48313 -33.77957 -31.94309 -31.65367 -30.14626 -27.86394 -25.75334 -24.18185 -23.62913 -22.73936 -20.78560 -20.43142 -20.01264 -17.41716 -16.76250 -16.62640 -15.85019 -15.48811 -15.26861 -15.01505 -14.62795 -14.50950 -14.19161 -13.70353 -13.38707 -13.05582 -12.95595 -12.83862 -12.58050 -12.06769 -11.72364 -11.69726 -11.50388 -11.36131 -11.32305 -11.23339 -10.89384 -10.72054 -10.44851 -10.26607 -9.76656 -9.76343 -9.55327 -9.42043 -8.71989 -8.54869 -6.93286 -6.02754 -3.45477 2.79319 2.93857 3.32620 3.50644 3.57405 3.95154 4.45693 4.51512 4.51650 4.54042 4.67410 4.84321 4.90261 5.05999 5.14765 5.27469 5.30995 5.39420 5.48738 5.60731 5.71604 5.72667 5.74879 5.78772 5.91138 5.97516 6.13880 6.22429 6.30144 6.46629 6.59113 6.63336 6.76631 6.82570 6.96068 7.03218 7.72822 8.01704 8.33218 8.45390 8.93389 9.67026 10.05659 11.12423 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003999 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.841255 B = 6999.784534 C = 7197.867331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 N -0.599 5.599 4 C -0.274 4.274 5 H 0.080 0.920 6 C 0.040 3.960 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.286 1.286 10 H -0.300 1.300 11 H -0.265 1.265 12 C 0.143 3.857 13 C 0.094 3.906 14 N -0.722 5.722 15 C 0.512 3.488 16 O -0.521 6.521 17 C 0.075 3.925 18 H 0.081 0.919 19 C -0.147 4.147 20 C -0.120 4.120 21 C -0.159 4.159 22 C 0.059 3.941 23 O -0.354 6.354 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 6.175 21.187 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.321 5.321 4 C -0.402 4.402 5 H 0.098 0.902 6 C -0.161 4.161 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.214 1.214 10 H -0.228 1.228 11 H -0.189 1.189 12 C 0.016 3.984 13 C -0.032 4.032 14 N -0.375 5.375 15 C 0.296 3.704 16 O -0.396 6.396 17 C 0.014 3.986 18 H 0.098 0.902 19 C -0.185 4.185 20 C -0.158 4.158 21 C -0.197 4.197 22 C -0.018 4.018 23 O -0.272 6.272 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.229 0.771 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.978 5.536 20.579 21.333 hybrid contribution 0.117 -0.462 0.398 0.621 sum 1.095 5.075 20.977 21.610 Atomic orbital electron populations 1.22223 0.98796 0.99516 1.01616 1.21167 0.92716 0.86403 0.99321 1.44096 1.74233 1.11491 1.02303 1.18775 1.34075 0.97283 0.90101 0.90214 1.25469 0.97330 0.98063 0.95267 1.69865 1.43791 1.40712 0.99383 0.86989 0.79941 0.83645 0.79100 1.21375 1.22767 1.18939 1.21058 0.91911 0.97315 0.88164 1.22461 1.02118 0.95728 0.82845 1.46023 1.14994 1.51878 1.24614 1.20130 0.83191 0.81853 0.85215 1.90738 1.37948 1.41210 1.69679 1.21920 0.88364 0.94650 0.93682 0.90160 1.22153 1.03874 0.93559 0.98893 1.21586 0.97416 1.00472 0.96319 1.22225 0.98611 0.97035 1.01812 1.22649 1.01984 0.91683 0.85485 1.88089 1.35066 1.69045 1.34984 0.94175 0.93868 0.92178 0.92330 0.94702 0.92605 0.92376 0.93682 0.92419 0.90927 0.77102 0.90209 0.90008 0.90955 0.91565 0.90777 0.90759 0.88490 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.23 37.15 0.38 -2.59 16 2 C 0.13 2.76 5.01 -4.04 -0.02 2.74 16 3 N -0.60 -13.74 2.08 -173.24 -0.36 -14.10 16 4 C -0.27 -7.49 9.91 -15.06 -0.15 -7.64 16 5 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 6 C 0.04 1.15 5.26 -17.43 -0.09 1.06 16 7 N -0.90 -27.26 13.97 55.49 0.78 -26.49 16 8 Si 0.87 22.57 25.05 -169.99 -4.26 18.31 16 9 H -0.29 -7.13 6.69 56.52 0.38 -6.75 16 10 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 11 H -0.26 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.14 2.62 5.80 -4.04 -0.02 2.60 16 13 C 0.09 1.76 6.00 -4.04 -0.02 1.73 16 14 N -0.72 -10.52 5.52 -60.29 -0.33 -10.85 16 15 C 0.51 8.36 7.18 -10.99 -0.08 8.28 16 16 O -0.52 -11.35 16.51 -14.31 -0.24 -11.58 16 17 C 0.08 0.91 3.05 -27.83 -0.09 0.82 16 18 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.15 -1.40 5.37 -26.59 -0.14 -1.54 16 20 C -0.12 -0.88 6.03 -26.55 -0.16 -1.04 16 21 C -0.16 -1.20 6.14 -26.59 -0.16 -1.36 16 22 C 0.06 0.53 6.84 37.20 0.25 0.79 16 23 O -0.35 -4.89 9.94 -55.09 -0.55 -5.44 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.39 3.60 -51.93 -0.19 1.21 16 28 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 30 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 31 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.40 4.18 8.32 -40.82 -0.34 3.84 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.64 7.99 -51.93 -0.41 0.22 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -34.27 337.10 -7.46 -41.73 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.27 Total: -0.51 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.30 Total: 3.85 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.08 Total: -51.44 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.78 Total: -17.02 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.26 Total: 18.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.27 -7.46 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267239512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.711 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds