Wall clock time and date at job start Mon Mar 30 2020 00:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46512 * 109.46879 * 2 1 4 4 C 1.36931 * 119.99802 * 263.78850 * 3 2 1 5 5 H 1.08006 * 119.99963 * 142.61665 * 4 3 2 6 6 C 1.38815 * 120.00132 * 322.61765 * 4 3 2 7 7 N 1.31621 * 119.99999 * 157.39442 * 6 4 3 8 8 Si 1.86794 * 120.00038 * 337.38526 * 6 4 3 9 9 H 1.48505 * 109.47070 * 95.71794 * 8 6 4 10 10 H 1.48500 * 109.47491 * 215.71883 * 8 6 4 11 11 H 1.48498 * 109.47405 * 335.71826 * 8 6 4 12 12 C 1.46494 * 120.00032 * 83.78991 * 3 2 1 13 13 C 1.53004 * 109.47190 * 89.99663 * 12 3 2 14 14 N 1.46504 * 109.46841 * 179.97438 * 13 12 3 15 15 C 1.34774 * 119.99570 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00259 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00189 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.47497 * 54.99835 * 17 15 14 19 19 C 1.53093 * 109.47809 * 294.98177 * 17 15 14 20 20 C 1.53179 * 109.16078 * 182.40515 * 19 17 15 21 21 C 1.53176 * 109.03657 * 56.97808 * 20 19 17 22 22 C 1.53092 * 109.16321 * 303.01847 * 21 20 19 23 23 O 1.42898 * 109.48257 * 175.02522 * 17 15 14 24 24 H 1.09001 * 109.46827 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47031 * 299.99743 * 1 2 3 26 26 H 1.09001 * 109.47739 * 60.00102 * 1 2 3 27 27 H 1.09000 * 109.47031 * 240.00257 * 2 1 3 28 28 H 1.09001 * 109.47739 * 119.99898 * 2 1 3 29 29 H 0.97001 * 119.99824 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47281 * 209.99941 * 12 3 2 31 31 H 1.09004 * 109.47174 * 330.00294 * 12 3 2 32 32 H 1.08993 * 109.47236 * 300.00306 * 13 12 3 33 33 H 1.09004 * 109.46546 * 60.00247 * 13 12 3 34 34 H 0.96992 * 120.00352 * 359.97438 * 14 13 12 35 35 H 1.08996 * 109.52431 * 302.30688 * 19 17 15 36 36 H 1.08999 * 109.52514 * 62.49816 * 19 17 15 37 37 H 1.09005 * 109.54317 * 176.84796 * 20 19 17 38 38 H 1.08998 * 109.54638 * 297.02177 * 20 19 17 39 39 H 1.09005 * 109.52122 * 62.92763 * 21 20 19 40 40 H 1.09000 * 109.52432 * 183.11406 * 21 20 19 41 41 H 1.09002 * 109.47999 * 177.59145 * 22 21 20 42 42 H 1.08997 * 109.48262 * 297.61417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3674 1.9841 -1.1789 5 1 2.1494 3.0302 -1.3359 6 6 3.0015 1.2505 -2.1723 7 7 2.9449 1.6520 -3.4245 8 14 3.9353 -0.3062 -1.7320 9 1 3.0563 -1.4854 -1.9369 10 1 5.1347 -0.4261 -2.5993 11 1 4.3573 -0.2447 -0.3095 12 6 2.1330 2.1177 1.2612 13 6 3.5250 1.8960 1.8564 14 7 3.6399 2.6329 3.1174 15 6 4.7868 2.5853 3.8235 16 8 5.7240 1.9329 3.4149 17 6 4.9053 3.3438 5.1204 18 1 4.0956 3.0502 5.7884 19 6 4.8184 4.8468 4.8426 20 6 4.9998 5.6123 6.1569 21 6 6.3381 5.2139 6.7865 22 6 6.3663 3.6968 6.9892 23 8 6.1611 3.0457 5.7338 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3883 1.1396 -4.1186 30 1 1.9821 3.1811 1.0761 31 1 1.3776 1.7599 1.9609 32 1 3.6758 0.8326 2.0415 33 1 4.2804 2.2538 1.1568 34 1 2.8908 3.1556 3.4437 35 1 5.6030 5.1338 4.1426 36 1 3.8437 5.0825 4.4152 37 1 4.9949 6.6841 5.9582 38 1 4.1863 5.3642 6.8387 39 1 7.1535 5.5084 6.1258 40 1 6.4503 5.7122 7.7494 41 1 7.3331 3.4025 7.3976 42 1 5.5760 3.4079 7.6821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267239512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:45 Heat of formation + Delta-G solvation = -94.925183 kcal Electronic energy + Delta-G solvation = -21283.211044 eV Core-core repulsion = 18069.653710 eV Total energy + Delta-G solvation = -3213.557334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30317 -39.53963 -38.28682 -35.92273 -34.59744 -33.88815 -32.75399 -31.57126 -29.48743 -26.84239 -25.44947 -24.84827 -24.26608 -22.05359 -21.70783 -21.14705 -18.81295 -18.44786 -17.73630 -17.30137 -16.73522 -16.70346 -16.21683 -15.79008 -15.51235 -15.38058 -15.20306 -14.87153 -14.61816 -14.42391 -13.86653 -13.67028 -13.61028 -13.50620 -13.08004 -12.80898 -12.67989 -12.52475 -12.35222 -12.17985 -11.94036 -11.91795 -11.72219 -11.42683 -11.38776 -10.80085 -10.66805 -10.48359 -10.13778 -8.85997 -8.24272 -5.61260 1.24262 1.39063 1.47996 1.52526 1.81757 2.37266 2.99400 3.04768 3.40330 3.66372 3.76947 3.90703 4.02554 4.05055 4.17428 4.19311 4.26280 4.31292 4.48977 4.62685 4.64962 4.67863 4.74548 4.80586 4.86127 4.95878 5.03260 5.08511 5.09288 5.12627 5.17699 5.20473 5.37211 5.41370 5.51735 5.92504 6.12601 6.15523 6.57261 6.95772 7.23286 7.59790 8.00539 8.95469 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003999 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.841255 B = 6999.784534 C = 7197.867331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 N -0.613 5.613 4 C -0.254 4.254 5 H 0.052 0.948 6 C -0.012 4.012 7 N -0.944 5.944 8 Si 0.929 3.071 9 H -0.270 1.270 10 H -0.313 1.313 11 H -0.268 1.268 12 C 0.147 3.853 13 C 0.109 3.891 14 N -0.702 5.702 15 C 0.506 3.494 16 O -0.585 6.585 17 C 0.082 3.918 18 H 0.117 0.883 19 C -0.145 4.145 20 C -0.116 4.116 21 C -0.158 4.158 22 C 0.051 3.949 23 O -0.396 6.396 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.420 0.580 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 6.502 24.693 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.005 4.005 3 N -0.336 5.336 4 C -0.384 4.384 5 H 0.069 0.931 6 C -0.209 4.209 7 N -0.588 5.588 8 Si 0.758 3.242 9 H -0.197 1.197 10 H -0.242 1.242 11 H -0.192 1.192 12 C 0.021 3.979 13 C -0.018 4.018 14 N -0.356 5.356 15 C 0.292 3.708 16 O -0.465 6.465 17 C 0.022 3.978 18 H 0.135 0.865 19 C -0.183 4.183 20 C -0.153 4.153 21 C -0.195 4.195 22 C -0.025 4.025 23 O -0.316 6.316 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.258 0.742 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.867 5.883 24.154 24.876 hybrid contribution 0.650 -0.494 -0.587 1.005 sum -0.216 5.389 23.568 24.177 Atomic orbital electron populations 1.22085 0.96083 1.01297 1.01566 1.21302 0.94913 0.85231 0.99077 1.44239 1.74500 1.12299 1.02523 1.18723 1.31966 0.96133 0.91581 0.93056 1.25969 0.98778 1.00962 0.95225 1.69966 1.45927 1.42615 1.00331 0.86092 0.78431 0.81610 0.78038 1.19691 1.24166 1.19244 1.21169 0.92420 0.97415 0.86932 1.21986 1.01072 0.94927 0.83826 1.45709 1.15729 1.51259 1.22949 1.21088 0.82243 0.80975 0.86454 1.90707 1.40140 1.44088 1.71522 1.21968 0.89080 0.95236 0.91554 0.86536 1.22186 1.04086 0.91993 1.00027 1.21612 0.97838 1.00706 0.95168 1.22228 0.98396 0.96126 1.02798 1.22919 1.03109 0.92428 0.84007 1.88035 1.36041 1.70366 1.37109 0.91535 0.91423 0.94645 0.95021 0.92436 0.92839 0.91661 0.89459 0.94146 0.95227 0.74231 0.92911 0.87896 0.89773 0.89234 0.92574 0.88212 0.88100 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 10.23 71.98 0.74 -4.33 16 2 C 0.12 4.84 5.01 86.37 0.43 5.28 16 3 N -0.61 -27.43 2.08 -701.99 -1.46 -28.89 16 4 C -0.25 -14.08 9.91 84.04 0.83 -13.25 16 5 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 6 C -0.01 -0.72 5.26 84.86 0.45 -0.28 16 7 N -0.94 -59.27 13.97 21.65 0.30 -58.97 16 8 Si 0.93 47.86 25.05 68.60 1.72 49.58 16 9 H -0.27 -13.06 6.69 99.48 0.67 -12.40 16 10 H -0.31 -16.60 7.11 99.48 0.71 -15.90 16 11 H -0.27 -13.73 7.11 99.48 0.71 -13.03 16 12 C 0.15 5.05 5.80 86.38 0.50 5.55 16 13 C 0.11 4.00 6.00 86.38 0.52 4.52 16 14 N -0.70 -19.23 5.52 -463.04 -2.56 -21.79 16 15 C 0.51 16.18 7.18 87.66 0.63 16.81 16 16 O -0.59 -26.24 16.51 15.93 0.26 -25.97 16 17 C 0.08 1.81 3.05 29.88 0.09 1.90 16 18 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.14 -2.41 5.37 30.69 0.16 -2.25 16 20 C -0.12 -1.26 6.03 30.71 0.19 -1.08 16 21 C -0.16 -1.97 6.14 30.68 0.19 -1.78 16 22 C 0.05 0.81 6.84 72.01 0.49 1.30 16 23 O -0.40 -10.56 9.94 -130.00 -1.29 -11.85 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.92 8.12 -2.39 -0.02 1.91 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.03 1.46 3.60 -2.39 -0.01 1.45 16 28 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 31 H 0.09 2.33 8.05 -2.39 -0.02 2.31 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.42 7.38 8.32 -92.71 -0.77 6.61 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.24 7.99 -2.39 -0.02 1.22 16 37 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.30 337.10 2.37 -76.93 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.18 Total: 8.57 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.22 Total: 12.40 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.71 Total: -109.64 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -1.03 Total: -37.83 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.72 Total: 49.58 kcal Total: -79.30 2.37 -76.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267239512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.995 kcal (2) G-P(sol) polarization free energy of solvation -79.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds