Wall clock time and date at job start Mon Mar 30 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47656 * 2 1 4 4 C 1.42893 * 114.00329 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47363 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99838 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00013 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47135 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.47499 * 180.02562 * 10 9 8 12 12 C 1.36943 * 120.00274 * 270.00442 * 11 10 9 13 13 H 1.07997 * 120.00300 * 144.92526 * 12 11 10 14 14 C 1.38817 * 119.99408 * 324.92321 * 12 11 10 15 15 N 1.31620 * 120.00119 * 337.93451 * 14 12 11 16 16 Si 1.86796 * 119.99584 * 157.93810 * 14 12 11 17 17 H 1.48491 * 109.47473 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47099 * 120.00190 * 16 14 12 19 19 H 1.48498 * 109.47119 * 239.99265 * 16 14 12 20 20 C 1.46504 * 120.00237 * 89.99677 * 11 10 9 21 21 C 1.53000 * 117.49921 * 183.24237 * 20 11 10 22 22 C 1.52998 * 117.49703 * 114.57839 * 20 11 10 23 23 H 1.09007 * 109.47057 * 300.00375 * 1 2 3 24 24 H 1.08994 * 109.47250 * 59.99866 * 1 2 3 25 25 H 1.08995 * 109.47683 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47057 * 239.99625 * 2 1 3 27 27 H 1.09007 * 109.47575 * 120.00165 * 2 1 3 28 28 H 1.09000 * 109.47719 * 59.99624 * 4 3 2 29 29 H 1.09004 * 109.47321 * 299.99820 * 4 3 2 30 30 H 1.08998 * 109.47455 * 59.99849 * 5 4 3 31 31 H 1.09002 * 109.47515 * 299.99720 * 5 4 3 32 32 H 0.96999 * 120.00208 * 359.97438 * 8 6 5 33 33 H 1.09005 * 109.47192 * 60.00004 * 9 8 6 34 34 H 1.09004 * 109.47527 * 300.00074 * 9 8 6 35 35 H 1.09005 * 109.47091 * 59.99924 * 10 9 8 36 36 H 1.08998 * 109.47356 * 300.00379 * 10 9 8 37 37 H 0.96995 * 119.99672 * 175.91349 * 15 14 12 38 38 H 1.09004 * 115.54877 * 328.91115 * 20 11 10 39 39 H 1.08998 * 117.50153 * 359.97438 * 21 20 11 40 40 H 1.08995 * 117.49708 * 145.02504 * 21 20 11 41 41 H 1.08995 * 117.49988 * 214.98174 * 22 20 11 42 42 H 1.08997 * 117.49880 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 6 5.3278 3.0572 -0.0012 7 8 6.0152 2.0579 -0.0002 8 7 5.9074 4.2740 -0.0011 9 6 7.3679 4.3895 -0.0005 10 6 7.7624 5.8678 0.0001 11 7 9.2228 5.9834 0.0000 12 6 9.9055 6.0369 1.1859 13 1 10.8779 5.5748 1.2706 14 6 9.3476 6.6853 2.2792 15 7 8.4146 7.5960 2.0987 16 14 9.9209 6.2652 4.0067 17 1 10.9702 5.2167 3.9388 18 1 10.4765 7.4812 4.6532 19 1 8.7712 5.7636 4.8015 20 6 9.9530 6.0417 -1.2687 21 6 11.4810 6.0857 -1.2030 22 6 10.6950 7.3387 -1.5978 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8334 0.9765 -0.8907 29 1 3.8341 0.9763 0.8892 30 1 3.4231 3.4221 0.8888 31 1 3.4224 3.4216 -0.8912 32 1 5.3577 5.0731 -0.0015 33 1 7.7710 3.9058 -0.8903 34 1 7.7703 3.9061 0.8897 35 1 7.3593 6.3511 0.8901 36 1 7.3600 6.3516 -0.8899 37 1 7.9828 8.0063 2.8642 38 1 9.5004 5.4967 -2.0971 39 1 11.9430 6.0718 -0.2159 40 1 12.0335 5.5702 -1.9885 41 1 10.7309 7.6468 -2.6427 42 1 10.6395 8.1486 -0.8706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267323165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:18 Heat of formation + Delta-G solvation = -47.531318 kcal Electronic energy + Delta-G solvation = -20520.336031 eV Core-core repulsion = 17308.833850 eV Total energy + Delta-G solvation = -3211.502182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47824 -38.01515 -37.12175 -34.78177 -33.23902 -32.58899 -30.95311 -30.23976 -27.60730 -24.65711 -23.46060 -22.96935 -21.67236 -21.25565 -20.09316 -19.69889 -17.41170 -16.54748 -16.36854 -15.78526 -15.61991 -15.45794 -15.17219 -14.62996 -14.23291 -14.10998 -13.71344 -13.27801 -12.85306 -12.67822 -12.54910 -12.09766 -11.95589 -11.87128 -11.57839 -11.21925 -11.18565 -11.07334 -10.76892 -10.74708 -10.33150 -10.14383 -9.87981 -9.73672 -9.67365 -9.61094 -9.30866 -8.60136 -8.50437 -6.67303 -5.87916 -3.48206 2.91000 3.15467 3.31133 3.40521 3.43905 3.92303 4.41109 4.79659 4.81105 4.89137 4.96863 4.99603 5.11542 5.20683 5.26210 5.30127 5.40176 5.55261 5.64022 5.71456 5.78771 5.87018 5.87569 6.01517 6.08419 6.18188 6.26639 6.47382 6.50075 6.59350 6.83330 6.95726 7.03625 7.04201 7.18877 7.50312 7.74082 7.88146 8.38285 8.53605 9.05750 9.68465 10.23195 11.08465 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.003540 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.312909 B = 7908.004571 C = 8710.981772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.140 4.140 6 C 0.511 3.489 7 O -0.552 6.552 8 N -0.718 5.718 9 C 0.099 3.901 10 C 0.136 3.864 11 N -0.548 5.548 12 C -0.258 4.258 13 H 0.069 0.931 14 C 0.011 3.989 15 N -0.884 5.884 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.287 1.287 20 C 0.119 3.881 21 C -0.195 4.195 22 C -0.220 4.220 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.399 0.601 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.032 0.968 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 -8.581 -5.277 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.180 4.180 6 C 0.297 3.703 7 O -0.430 6.430 8 N -0.369 5.369 9 C -0.027 4.027 10 C 0.009 3.991 11 N -0.265 5.265 12 C -0.387 4.387 13 H 0.086 0.914 14 C -0.190 4.190 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.213 1.213 20 C 0.010 3.990 21 C -0.234 4.234 22 C -0.261 4.261 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.233 0.767 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.474 -8.987 -5.133 15.452 hybrid contribution 0.237 0.075 0.914 0.947 sum -11.237 -8.911 -4.219 14.949 Atomic orbital electron populations 1.21745 0.93817 1.02150 1.03107 1.22435 0.95387 0.83775 1.00249 1.87799 1.21447 1.26576 1.95584 1.22112 0.80254 0.95727 1.01692 1.21480 0.93214 0.97815 1.05498 1.20327 0.89694 0.83783 0.76543 1.90692 1.65433 1.36528 1.50386 1.46075 1.09291 1.07535 1.73969 1.22328 0.76937 1.02055 1.01337 1.21105 0.84755 0.90504 1.02747 1.43247 1.01064 1.82122 1.00040 1.19142 1.03682 1.28368 0.87495 0.91374 1.25130 0.99661 0.94930 0.99249 1.70042 1.28570 1.24263 1.29720 0.86326 0.78450 0.77991 0.84669 1.19933 1.21578 1.21331 1.21236 0.90234 0.97291 0.90232 1.23046 0.95687 1.02459 1.02160 1.23362 1.09040 0.94036 0.99657 0.91857 0.91876 0.91184 0.93375 0.93345 0.92495 0.92430 0.88161 0.88253 0.76719 0.93153 0.91594 0.87641 0.94993 0.93544 0.89479 0.88404 0.90666 0.91160 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -4.71 10.34 -35.23 -0.36 -5.08 16 4 C 0.08 0.98 5.23 37.16 0.19 1.17 16 5 C -0.14 -1.67 6.07 -27.88 -0.17 -1.84 16 6 C 0.51 8.21 7.83 -10.98 -0.09 8.12 16 7 O -0.55 -11.01 15.98 5.55 0.09 -10.92 16 8 N -0.72 -11.56 5.56 -60.29 -0.33 -11.90 16 9 C 0.10 1.95 6.00 -4.04 -0.02 1.93 16 10 C 0.14 2.94 5.45 -4.05 -0.02 2.92 16 11 N -0.55 -13.08 2.78 -165.66 -0.46 -13.54 16 12 C -0.26 -6.74 8.63 -15.05 -0.13 -6.87 16 13 H 0.07 1.81 6.55 -52.49 -0.34 1.46 16 14 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 15 N -0.88 -24.09 11.33 55.49 0.63 -23.46 16 16 Si 0.90 21.12 29.61 -169.99 -5.03 16.09 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 C 0.12 2.50 6.56 -67.93 -0.45 2.05 16 21 C -0.20 -3.82 9.80 -26.69 -0.26 -4.08 16 22 C -0.22 -4.41 10.36 -26.69 -0.28 -4.68 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 5.35 8.47 -40.82 -0.35 5.01 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.11 2.56 5.36 -51.93 -0.28 2.28 16 36 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.25 6.70 8.32 -40.82 -0.34 6.36 16 38 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -30.13 349.93 -8.07 -38.20 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.19 Total: 6.37 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.68 Total: -1.03 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.17 Total: -48.90 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.28 Total: -16.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.13 -8.07 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267323165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.332 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds