Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99805 * 2 1 4 4 H 1.08996 * 110.06016 * 28.58161 * 3 2 1 5 5 C 1.54260 * 110.03150 * 267.16255 * 3 2 1 6 6 C 1.54895 * 104.19755 * 217.10411 * 5 3 2 7 7 C 1.54894 * 102.74332 * 37.94366 * 6 5 3 8 8 C 1.53877 * 110.03134 * 149.99685 * 3 2 1 9 9 H 1.09006 * 110.07352 * 238.58798 * 8 3 2 10 10 C 1.50704 * 110.03242 * 359.97438 * 8 3 2 11 11 O 1.21276 * 119.99736 * 93.18461 * 10 8 3 12 12 N 1.34773 * 119.99690 * 273.45729 * 10 8 3 13 13 C 1.46495 * 120.00357 * 4.53095 * 12 10 8 14 14 C 1.46505 * 119.99687 * 184.53262 * 12 10 8 15 15 C 1.53005 * 109.47315 * 89.99965 * 14 12 10 16 16 N 1.46494 * 109.46988 * 180.02562 * 15 14 12 17 17 C 1.36939 * 119.99954 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00347 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99909 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00118 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47610 * 60.00072 * 21 19 17 23 23 H 1.48506 * 109.47375 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47355 * 299.99984 * 21 19 17 25 25 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47038 * 300.00531 * 1 2 3 27 27 H 1.09003 * 109.46620 * 60.00715 * 1 2 3 28 28 H 1.09005 * 110.48919 * 98.43003 * 5 3 2 29 29 H 1.09001 * 110.49155 * 335.78135 * 5 3 2 30 30 H 1.08997 * 110.75769 * 279.63204 * 6 5 3 31 31 H 1.09002 * 110.75608 * 156.25306 * 6 5 3 32 32 H 1.08999 * 110.48253 * 203.37611 * 7 6 5 33 33 H 1.09003 * 110.60021 * 80.79603 * 7 6 5 34 34 H 1.09000 * 109.47056 * 84.70772 * 13 12 10 35 35 H 1.09003 * 109.46942 * 204.70353 * 13 12 10 36 36 H 1.08998 * 109.47375 * 324.70272 * 13 12 10 37 37 H 1.08994 * 109.47315 * 209.99947 * 14 12 10 38 38 H 1.09001 * 109.46946 * 330.00350 * 14 12 10 39 39 H 1.09006 * 109.46550 * 300.00066 * 15 14 12 40 40 H 1.09001 * 109.46701 * 59.99747 * 15 14 12 41 41 H 0.96994 * 120.00670 * 359.97438 * 16 15 14 42 42 H 0.97002 * 120.00018 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 0.4898 5 6 2.2907 1.7591 -1.4475 6 6 3.6253 2.5389 -1.3494 7 6 4.4266 1.7156 -0.3105 8 6 3.3683 1.2779 0.7229 9 1 3.3586 1.9712 1.5640 10 6 3.6663 -0.1173 1.2085 11 8 4.3159 -0.8738 0.5181 12 7 3.2064 -0.5261 2.4075 13 6 2.3344 0.3491 3.1948 14 6 3.5784 -1.8457 2.9237 15 6 4.8648 -1.7286 3.7438 16 7 5.2372 -3.0483 4.2593 17 6 6.3625 -3.1911 5.0265 18 1 6.9753 -2.3308 5.2518 19 6 6.7150 -4.4415 5.5155 20 7 5.9680 -5.4899 5.2414 21 14 8.2496 -4.6361 6.5625 22 1 8.1277 -3.7959 7.7808 23 1 8.4032 -6.0599 6.9559 24 1 9.4386 -4.2076 5.7827 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.4933 2.4110 -1.8043 29 1 2.4008 0.8955 -2.1034 30 1 3.4544 3.5535 -0.9894 31 1 4.1377 2.5503 -2.3115 32 1 5.1880 2.3358 0.1624 33 1 4.8834 0.8449 -0.7811 34 1 1.3023 0.2231 2.8678 35 1 2.4155 0.0888 4.2502 36 1 2.6366 1.3866 3.0523 37 1 2.7775 -2.2273 3.5568 38 1 3.7399 -2.5295 2.0903 39 1 5.6658 -1.3470 3.1105 40 1 4.7034 -1.0447 4.5771 41 1 4.6867 -3.8209 4.0574 42 1 6.2145 -6.3637 5.5828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267394249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = -69.183454 kcal Electronic energy + Delta-G solvation = -21617.432001 eV Core-core repulsion = 18404.990912 eV Total energy + Delta-G solvation = -3212.441089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38321 -38.26149 -36.19622 -35.47680 -34.23369 -31.43934 -29.73360 -28.45294 -27.93061 -26.30428 -26.15689 -23.77558 -21.90485 -21.04294 -20.71943 -18.74765 -17.59451 -17.06095 -16.46648 -16.12428 -15.65095 -15.18344 -14.86167 -14.44904 -14.21990 -13.95498 -13.68446 -13.18578 -13.10175 -12.86967 -12.80721 -12.61632 -12.23709 -11.69764 -11.65230 -11.55163 -11.26887 -11.14980 -10.95280 -10.86897 -10.85889 -10.71696 -10.56880 -10.09156 -9.76735 -9.70296 -9.39477 -8.80879 -8.29386 -6.86744 -5.70163 -2.99162 2.94529 3.24136 3.48869 3.52702 3.54267 3.57240 4.26875 4.35884 4.61388 4.67254 4.88174 4.97334 5.03309 5.08405 5.12832 5.24154 5.30478 5.36483 5.42057 5.47392 5.53769 5.59059 5.64871 5.71241 5.72662 5.81371 5.84096 5.96946 6.00356 6.13747 6.24853 6.27971 6.69947 6.84592 7.00630 7.04810 7.71734 7.75173 8.48090 8.54930 9.59114 10.16373 10.51631 11.52809 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.003799 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.242477 B = 7368.030412 C = 7763.294691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.098 3.902 4 H 0.069 0.931 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.116 4.116 9 H 0.099 0.901 10 C 0.538 3.462 11 O -0.531 6.531 12 N -0.608 5.608 13 C 0.082 3.918 14 C 0.110 3.890 15 C 0.143 3.857 16 N -0.730 5.730 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.017 0.983 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 19.131 -11.021 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C 0.040 3.960 4 H 0.087 0.913 5 C -0.183 4.183 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.138 4.138 9 H 0.117 0.883 10 C 0.325 3.675 11 O -0.407 6.407 12 N -0.341 5.341 13 C -0.061 4.061 14 C -0.013 4.013 15 C 0.015 3.985 16 N -0.375 5.375 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.634 18.568 -11.284 25.134 hybrid contribution 0.302 -0.105 0.724 0.791 sum -12.332 18.463 -10.560 24.586 Atomic orbital electron populations 1.22777 0.81263 1.02881 0.99556 1.88098 1.19378 1.26693 1.94827 1.22686 0.92819 0.85127 0.95410 0.91304 1.22891 0.97836 1.00658 0.96906 1.22410 0.95452 0.98325 0.99607 1.22387 0.96468 1.00964 0.95431 1.22179 0.96071 0.95981 0.99532 0.88316 1.19915 0.78517 0.88589 0.80488 1.90674 1.39903 1.55331 1.54744 1.47629 1.49471 1.18092 1.18903 1.21745 0.93689 0.94060 0.96652 1.21647 0.97607 0.83246 0.98761 1.20918 0.93541 0.89616 0.94469 1.42211 1.29802 1.03936 1.61557 1.19172 1.00888 0.93652 1.23193 0.91289 1.24741 0.99199 0.95584 1.01473 1.69657 1.39618 0.98921 1.50079 0.86240 0.82980 0.76618 0.80182 1.21299 1.21654 1.21247 0.89637 0.94138 0.94236 0.91446 0.90064 0.91394 0.90919 0.91048 0.88980 0.93071 0.90664 0.91817 0.90825 0.89721 0.96123 0.96567 0.78255 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.59 8.81 -35.23 -0.31 -4.90 16 3 C 0.10 0.98 3.31 -25.62 -0.08 0.89 16 4 H 0.07 0.52 7.81 -51.93 -0.41 0.11 16 5 C -0.15 -1.29 6.56 -25.07 -0.16 -1.45 16 6 C -0.12 -1.00 6.91 -24.73 -0.17 -1.17 16 7 C -0.11 -1.27 6.30 -25.07 -0.16 -1.43 16 8 C -0.12 -1.35 2.55 -90.65 -0.23 -1.58 16 9 H 0.10 0.91 6.25 -51.93 -0.32 0.59 16 10 C 0.54 8.82 5.48 -10.99 -0.06 8.76 16 11 O -0.53 -11.11 15.13 5.56 0.08 -11.03 16 12 N -0.61 -9.42 2.87 -181.57 -0.52 -9.95 16 13 C 0.08 0.89 10.19 59.84 0.61 1.50 16 14 C 0.11 2.06 5.53 -4.04 -0.02 2.03 16 15 C 0.14 3.19 6.58 -4.04 -0.03 3.16 16 16 N -0.73 -19.84 5.60 -59.91 -0.34 -20.17 16 17 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 18 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 21 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.29 8.10 -51.93 -0.42 -0.14 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.29 6.80 -51.93 -0.35 0.94 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.80 8.03 -51.93 -0.42 0.39 16 36 H 0.06 0.55 6.04 -51.93 -0.31 0.23 16 37 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 38 H 0.08 1.79 7.36 -51.93 -0.38 1.40 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.82 7.67 -40.82 -0.31 10.51 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -35.57 339.73 -6.84 -42.41 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.12 Total: 4.50 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 0.54 Total: 4.40 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.13 Total: -58.61 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.23 Total: -15.93 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.57 -6.84 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267394249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.774 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds