Wall clock time and date at job start Mon Mar 30 2020 01:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99805 * 2 1 4 4 H 1.08996 * 110.06016 * 28.58161 * 3 2 1 5 5 C 1.54260 * 110.03150 * 267.16255 * 3 2 1 6 6 C 1.54895 * 104.19755 * 217.10411 * 5 3 2 7 7 C 1.54894 * 102.74332 * 37.94366 * 6 5 3 8 8 C 1.53877 * 110.03134 * 149.99685 * 3 2 1 9 9 H 1.09006 * 110.07352 * 238.58798 * 8 3 2 10 10 C 1.50704 * 110.03242 * 359.97438 * 8 3 2 11 11 O 1.21276 * 119.99736 * 93.18461 * 10 8 3 12 12 N 1.34773 * 119.99690 * 273.45729 * 10 8 3 13 13 C 1.46495 * 120.00357 * 4.53095 * 12 10 8 14 14 C 1.46505 * 119.99687 * 184.53262 * 12 10 8 15 15 C 1.53005 * 109.47315 * 89.99965 * 14 12 10 16 16 N 1.46494 * 109.46988 * 180.02562 * 15 14 12 17 17 C 1.36939 * 119.99954 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00347 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99909 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00118 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47610 * 60.00072 * 21 19 17 23 23 H 1.48506 * 109.47375 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47355 * 299.99984 * 21 19 17 25 25 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47038 * 300.00531 * 1 2 3 27 27 H 1.09003 * 109.46620 * 60.00715 * 1 2 3 28 28 H 1.09005 * 110.48919 * 98.43003 * 5 3 2 29 29 H 1.09001 * 110.49155 * 335.78135 * 5 3 2 30 30 H 1.08997 * 110.75769 * 279.63204 * 6 5 3 31 31 H 1.09002 * 110.75608 * 156.25306 * 6 5 3 32 32 H 1.08999 * 110.48253 * 203.37611 * 7 6 5 33 33 H 1.09003 * 110.60021 * 80.79603 * 7 6 5 34 34 H 1.09000 * 109.47056 * 84.70772 * 13 12 10 35 35 H 1.09003 * 109.46942 * 204.70353 * 13 12 10 36 36 H 1.08998 * 109.47375 * 324.70272 * 13 12 10 37 37 H 1.08994 * 109.47315 * 209.99947 * 14 12 10 38 38 H 1.09001 * 109.46946 * 330.00350 * 14 12 10 39 39 H 1.09006 * 109.46550 * 300.00066 * 15 14 12 40 40 H 1.09001 * 109.46701 * 59.99747 * 15 14 12 41 41 H 0.96994 * 120.00670 * 359.97438 * 16 15 14 42 42 H 0.97002 * 120.00018 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 0.4898 5 6 2.2907 1.7591 -1.4475 6 6 3.6253 2.5389 -1.3494 7 6 4.4266 1.7156 -0.3105 8 6 3.3683 1.2779 0.7229 9 1 3.3586 1.9712 1.5640 10 6 3.6663 -0.1173 1.2085 11 8 4.3159 -0.8738 0.5181 12 7 3.2064 -0.5261 2.4075 13 6 2.3344 0.3491 3.1948 14 6 3.5784 -1.8457 2.9237 15 6 4.8648 -1.7286 3.7438 16 7 5.2372 -3.0483 4.2593 17 6 6.3625 -3.1911 5.0265 18 1 6.9753 -2.3308 5.2518 19 6 6.7150 -4.4415 5.5155 20 7 5.9680 -5.4899 5.2414 21 14 8.2496 -4.6361 6.5625 22 1 8.1277 -3.7959 7.7808 23 1 8.4032 -6.0599 6.9559 24 1 9.4386 -4.2076 5.7827 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.4933 2.4110 -1.8043 29 1 2.4008 0.8955 -2.1034 30 1 3.4544 3.5535 -0.9894 31 1 4.1377 2.5503 -2.3115 32 1 5.1880 2.3358 0.1624 33 1 4.8834 0.8449 -0.7811 34 1 1.3023 0.2231 2.8678 35 1 2.4155 0.0888 4.2502 36 1 2.6366 1.3866 3.0523 37 1 2.7775 -2.2273 3.5568 38 1 3.7399 -2.5295 2.0903 39 1 5.6658 -1.3470 3.1105 40 1 4.7034 -1.0447 4.5771 41 1 4.6867 -3.8209 4.0574 42 1 6.2145 -6.3637 5.5828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267394249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:34 Heat of formation + Delta-G solvation = -94.689014 kcal Electronic energy + Delta-G solvation = -21618.538005 eV Core-core repulsion = 18404.990912 eV Total energy + Delta-G solvation = -3213.547093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45226 -39.26373 -37.45390 -36.62433 -36.03091 -33.44057 -30.95755 -29.36729 -29.15496 -27.41880 -26.97351 -25.66867 -23.57975 -21.97670 -21.74155 -19.88534 -19.20930 -18.53160 -17.38437 -17.34251 -16.89853 -16.36274 -16.07521 -15.79064 -15.44058 -15.19032 -14.98648 -14.88467 -14.63836 -14.25430 -13.85147 -13.39816 -13.24814 -13.07401 -12.86669 -12.78274 -12.54141 -12.36947 -12.27488 -12.22269 -12.17057 -11.96268 -11.88605 -11.71081 -11.48294 -10.98641 -10.70080 -10.49030 -9.60402 -9.08952 -7.98753 -5.30392 1.45031 1.49900 1.55958 1.73818 2.03735 2.55445 2.84848 3.34039 3.48530 3.59084 3.70876 4.05013 4.07589 4.20962 4.23752 4.27548 4.33141 4.41155 4.45655 4.50862 4.54673 4.58720 4.63316 4.73457 4.77864 4.88578 4.95390 4.99179 4.99697 5.04905 5.10364 5.18191 5.21700 5.41240 5.46074 5.60445 6.22185 6.33398 6.52792 7.27871 7.30869 7.99394 8.25349 9.24596 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.003799 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.242477 B = 7368.030412 C = 7763.294691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.096 3.904 4 H 0.107 0.893 5 C -0.144 4.144 6 C -0.110 4.110 7 C -0.121 4.121 8 C -0.112 4.112 9 H 0.132 0.868 10 C 0.528 3.472 11 O -0.592 6.592 12 N -0.608 5.608 13 C 0.074 3.926 14 C 0.125 3.875 15 C 0.151 3.849 16 N -0.744 5.744 17 C -0.255 4.255 18 H 0.074 0.926 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.981 3.019 22 H -0.272 1.272 23 H -0.291 1.291 24 H -0.280 1.280 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.051 0.949 39 H -0.003 1.003 40 H 0.033 0.967 41 H 0.375 0.625 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 22.152 -10.154 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.038 3.962 4 H 0.125 0.875 5 C -0.182 4.182 6 C -0.148 4.148 7 C -0.159 4.159 8 C -0.133 4.133 9 H 0.150 0.850 10 C 0.318 3.682 11 O -0.472 6.472 12 N -0.340 5.340 13 C -0.067 4.067 14 C 0.001 3.999 15 C 0.024 3.976 16 N -0.387 5.387 17 C -0.386 4.386 18 H 0.092 0.908 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.808 3.192 22 H -0.197 1.197 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.051 0.949 41 H 0.206 0.794 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.771 21.658 -10.406 27.695 hybrid contribution 0.616 -1.026 0.418 1.268 sum -13.156 20.632 -9.988 26.429 Atomic orbital electron populations 1.22915 0.79625 1.03007 1.01287 1.88068 1.21390 1.28394 1.95081 1.22901 0.92219 0.85098 0.95953 0.87498 1.22897 0.99099 1.00166 0.96043 1.22409 0.94420 0.99101 0.98831 1.22404 0.97159 1.00037 0.96297 1.22346 0.97375 0.92891 1.00717 0.85028 1.20893 0.77163 0.90152 0.79990 1.90645 1.42582 1.57436 1.56502 1.47753 1.49711 1.17281 1.19213 1.22077 0.93832 0.94659 0.96135 1.21237 0.96472 0.85038 0.97175 1.20944 0.94386 0.87625 0.94683 1.42409 1.29390 1.05379 1.61548 1.19581 1.01652 0.94081 1.23313 0.90815 1.25663 1.02602 0.95191 1.03076 1.69825 1.41474 0.99252 1.51336 0.85120 0.78857 0.76531 0.78669 1.19741 1.21677 1.20615 0.90496 0.92043 0.92728 0.88593 0.92925 0.88349 0.90786 0.89908 0.93177 0.91101 0.90337 0.88722 0.89172 0.93083 0.98519 0.94943 0.79351 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.85 113.37 1.23 1.65 16 2 O -0.41 -9.62 8.81 -148.98 -1.31 -10.94 16 3 C 0.10 1.65 3.31 31.32 0.10 1.75 16 4 H 0.11 1.03 7.81 -2.39 -0.02 1.01 16 5 C -0.14 -2.24 6.56 31.67 0.21 -2.04 16 6 C -0.11 -1.56 6.91 31.89 0.22 -1.34 16 7 C -0.12 -2.60 6.30 31.67 0.20 -2.40 16 8 C -0.11 -2.38 2.55 -10.82 -0.03 -2.41 16 9 H 0.13 1.87 6.25 -2.38 -0.01 1.86 16 10 C 0.53 17.46 5.48 87.66 0.48 17.94 16 11 O -0.59 -26.39 15.13 -3.02 -0.05 -26.43 16 12 N -0.61 -18.45 2.87 -846.76 -2.43 -20.89 16 13 C 0.07 1.39 10.19 127.77 1.30 2.69 16 14 C 0.12 4.78 5.53 86.38 0.48 5.26 16 15 C 0.15 6.88 6.58 86.38 0.57 7.45 16 16 N -0.74 -41.42 5.60 -343.45 -1.92 -43.34 16 17 C -0.25 -15.20 9.99 84.03 0.84 -14.36 16 18 H 0.07 4.23 7.83 -2.91 -0.02 4.20 16 19 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 20 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 21 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 25 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.51 6.80 -2.39 -0.02 1.49 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.44 8.03 -2.39 -0.02 1.42 16 36 H 0.09 1.19 6.04 -2.39 -0.01 1.17 16 37 H 0.09 3.12 8.07 -2.39 -0.02 3.10 16 38 H 0.05 2.29 7.36 -2.39 -0.02 2.28 16 39 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.37 21.88 7.67 -92.71 -0.71 21.17 16 42 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.02 339.73 2.95 -78.08 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.28 Total: 24.88 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.07 Total: 10.27 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -4.07 Total: -125.55 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.36 Total: -37.37 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.02 2.95 -78.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267394249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.612 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds