Wall clock time and date at job start Mon Mar 30 2020 01:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.47032 * 2 1 4 4 C 1.42900 * 113.99921 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47144 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99834 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00318 * 185.19000 * 7 5 4 9 9 C 1.53005 * 109.47145 * 183.95049 * 8 7 5 10 10 C 1.52999 * 109.46969 * 63.95184 * 8 7 5 11 11 N 1.46500 * 109.47030 * 59.99927 * 10 8 7 12 12 C 1.36937 * 120.00138 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99755 * 359.97438 * 12 11 10 14 14 C 1.38808 * 120.00284 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00119 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00156 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47001 * 90.00192 * 16 14 12 18 18 H 1.48499 * 109.47592 * 210.00703 * 16 14 12 19 19 H 1.48501 * 109.46810 * 330.00394 * 16 14 12 20 20 C 1.52994 * 109.47682 * 303.95092 * 8 7 5 21 21 C 1.52995 * 117.52274 * 228.44841 * 20 8 7 22 22 C 1.53001 * 117.49975 * 297.08334 * 20 8 7 23 23 H 1.08998 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46843 * 299.99824 * 1 2 3 25 25 H 1.09001 * 109.47134 * 59.99420 * 1 2 3 26 26 H 1.08997 * 109.46550 * 240.00720 * 2 1 3 27 27 H 1.08996 * 109.47315 * 120.00135 * 2 1 3 28 28 H 1.09002 * 109.47039 * 60.00417 * 4 3 2 29 29 H 1.08998 * 109.47021 * 300.00143 * 4 3 2 30 30 H 0.97001 * 119.99979 * 5.20019 * 7 5 4 31 31 H 1.09003 * 109.46706 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.47099 * 299.99868 * 9 8 7 33 33 H 1.08993 * 109.46980 * 60.00226 * 9 8 7 34 34 H 1.09004 * 109.47388 * 179.97438 * 10 8 7 35 35 H 1.08993 * 109.47268 * 299.99898 * 10 8 7 36 36 H 0.96996 * 120.00435 * 359.97438 * 11 10 8 37 37 H 0.97003 * 120.00431 * 180.02562 * 15 14 12 38 38 H 1.09009 * 115.55026 * 82.74337 * 20 8 7 39 39 H 1.09002 * 117.50479 * 214.96757 * 21 20 8 40 40 H 1.08997 * 117.49803 * 359.97438 * 21 20 8 41 41 H 1.08998 * 117.49554 * 359.96562 * 22 20 8 42 42 H 1.08998 * 117.50237 * 144.97406 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1209 3.2664 -0.0013 8 6 5.5000 4.6768 0.1129 9 6 7.0194 4.8082 -0.0112 10 6 5.0507 5.2172 1.4720 11 7 5.6961 4.4500 2.5402 12 6 5.4433 4.7549 3.8510 13 1 4.7683 5.5612 4.0973 14 6 6.0552 4.0283 4.8631 15 7 5.8118 4.3211 6.1231 16 14 7.2231 2.6341 4.4372 17 1 8.6054 3.1642 4.3215 18 1 7.1756 1.6044 5.5061 19 1 6.8167 2.0253 3.1451 20 6 4.8261 5.4781 -1.0026 21 6 5.7019 6.4345 -1.8143 22 6 5.2011 5.1337 -2.4454 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8333 0.9768 -0.8909 29 1 3.8341 0.9765 0.8891 30 1 5.8067 2.5845 -0.0771 31 1 7.3014 5.8576 0.0743 32 1 7.4995 4.2374 0.7837 33 1 7.3394 4.4232 -0.9793 34 1 5.3331 6.2665 1.5572 35 1 3.9684 5.1236 1.5604 36 1 6.3020 3.7255 2.3190 37 1 6.2396 3.8136 6.8304 38 1 3.7968 5.7802 -0.8086 39 1 5.2490 7.3658 -2.1544 40 1 6.7586 6.4934 -1.5535 41 1 5.9284 4.3367 -2.5998 42 1 4.4186 5.2090 -3.2005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267848711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:27 Heat of formation + Delta-G solvation = -37.546097 kcal Electronic energy + Delta-G solvation = -21895.631171 eV Core-core repulsion = 18684.561980 eV Total energy + Delta-G solvation = -3211.069190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16800 -38.29753 -37.04126 -35.09782 -33.49947 -31.74398 -31.28757 -29.84789 -27.35596 -26.37381 -23.65026 -22.86282 -22.32598 -21.24378 -20.73121 -18.87436 -17.74029 -17.06723 -16.76980 -16.37959 -15.93736 -15.10053 -14.65195 -14.52490 -14.30205 -13.98435 -13.53131 -12.97407 -12.81321 -12.75579 -12.60676 -12.37082 -12.17667 -11.98849 -11.54228 -11.45031 -11.30918 -11.16793 -11.03627 -10.91386 -10.73048 -10.27771 -10.19446 -9.94936 -9.71497 -9.56000 -9.25956 -8.83716 -8.67852 -7.16401 -5.72735 -3.06868 2.89622 3.01159 3.31140 3.34859 3.42201 3.86398 4.19908 4.59365 4.65290 4.89958 4.93311 5.02502 5.05589 5.16777 5.18638 5.24494 5.25565 5.32006 5.35254 5.55096 5.55686 5.57962 5.66977 5.71214 5.81196 5.91693 6.03108 6.06895 6.09459 6.20494 6.36491 6.46796 6.50315 6.81431 6.98762 7.06227 7.79815 8.05254 8.46000 8.57671 9.25475 9.97208 10.18046 11.46269 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.007501 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.015047 B = 3731.949309 C = 5472.680733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.044 3.956 5 C 0.523 3.477 6 O -0.510 6.510 7 N -0.716 5.716 8 C 0.199 3.801 9 C -0.155 4.155 10 C 0.150 3.850 11 N -0.751 5.751 12 C -0.235 4.235 13 H 0.090 0.910 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.884 3.116 17 H -0.285 1.285 18 H -0.292 1.292 19 H -0.281 1.281 20 C -0.142 4.142 21 C -0.182 4.182 22 C -0.174 4.174 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.394 0.606 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.357 0.643 37 H 0.258 0.742 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -6.905 -18.583 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.280 6.280 4 C -0.036 4.036 5 C 0.308 3.692 6 O -0.384 6.384 7 N -0.369 5.369 8 C 0.114 3.886 9 C -0.213 4.213 10 C 0.023 3.977 11 N -0.396 5.396 12 C -0.365 4.365 13 H 0.108 0.892 14 C -0.194 4.194 15 N -0.584 5.584 16 Si 0.714 3.286 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.161 4.161 21 C -0.220 4.220 22 C -0.212 4.212 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.228 0.772 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.190 0.810 37 H 0.068 0.932 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.055 -6.002 -18.350 19.415 hybrid contribution 1.408 -1.745 -0.100 2.245 sum -0.647 -7.747 -18.449 20.020 Atomic orbital electron populations 1.21721 0.93507 1.02025 1.03494 1.22526 0.95939 0.83698 1.00000 1.88029 1.18610 1.25971 1.95379 1.22210 0.83835 0.95432 1.02144 1.19945 0.82790 0.90081 0.76378 1.90676 1.49277 1.51353 1.47050 1.45888 1.06745 1.08492 1.75801 1.20076 0.93834 0.79732 0.94992 1.22147 0.93836 1.03774 1.01527 1.20992 0.97467 0.94522 0.84749 1.42618 1.54952 1.39430 1.02641 1.19088 1.22505 1.14178 0.80734 0.89245 1.24649 1.00376 0.99298 0.95056 1.69699 1.47489 1.43200 0.98053 0.86562 0.81765 0.83238 0.76987 1.21156 1.21829 1.20715 1.22576 1.00665 1.01754 0.91132 1.23146 1.00377 0.94005 1.04432 1.22792 1.03324 0.98931 0.96123 0.91159 0.91521 0.91829 0.93520 0.93170 0.90978 0.90250 0.77243 0.90179 0.91469 0.92516 0.94645 0.93585 0.80964 0.93174 0.86439 0.89064 0.88217 0.89325 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.61 6.66 37.16 0.25 0.86 16 3 O -0.36 -5.60 9.88 -55.14 -0.54 -6.14 16 4 C 0.04 0.60 6.42 36.00 0.23 0.83 16 5 C 0.52 8.78 7.32 -10.99 -0.08 8.70 16 6 O -0.51 -10.53 13.32 -14.36 -0.19 -10.72 16 7 N -0.72 -10.56 4.71 -47.61 -0.22 -10.79 16 8 C 0.20 3.13 0.54 -131.82 -0.07 3.06 16 9 C -0.16 -2.08 7.04 37.16 0.26 -1.82 16 10 C 0.15 3.12 5.02 -4.04 -0.02 3.10 16 11 N -0.75 -17.96 4.98 -59.91 -0.30 -18.26 16 12 C -0.23 -6.81 10.47 -15.06 -0.16 -6.97 16 13 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 14 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 15 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 16 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 20 C -0.14 -2.06 4.05 -90.62 -0.37 -2.43 16 21 C -0.18 -2.14 9.62 -26.73 -0.26 -2.40 16 22 C -0.17 -2.07 9.81 -26.73 -0.26 -2.34 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.39 4.67 8.48 -40.82 -0.35 4.32 16 31 H 0.08 1.04 6.84 -51.93 -0.36 0.69 16 32 H 0.07 0.98 6.86 -51.93 -0.36 0.63 16 33 H 0.06 0.61 7.01 -51.93 -0.36 0.24 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 36 H 0.36 8.09 4.21 -40.82 -0.17 7.92 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.12 2.01 7.18 -51.92 -0.37 1.63 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.08 5.87 -51.93 -0.31 0.78 16 41 H 0.09 0.96 7.42 -51.93 -0.39 0.58 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -35.15 336.35 -7.14 -42.29 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.82 Total: 10.99 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.19 Total: -0.57 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.25 Total: -58.14 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.74 Total: -16.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.15 -7.14 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267848711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.747 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds