Wall clock time and date at job start Mon Mar 30 2020 01:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.47032 * 2 1 4 4 C 1.42900 * 113.99921 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47144 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99834 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00318 * 185.19000 * 7 5 4 9 9 C 1.53005 * 109.47145 * 183.95049 * 8 7 5 10 10 C 1.52999 * 109.46969 * 63.95184 * 8 7 5 11 11 N 1.46500 * 109.47030 * 59.99927 * 10 8 7 12 12 C 1.36937 * 120.00138 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99755 * 359.97438 * 12 11 10 14 14 C 1.38808 * 120.00284 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00119 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00156 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47001 * 90.00192 * 16 14 12 18 18 H 1.48499 * 109.47592 * 210.00703 * 16 14 12 19 19 H 1.48501 * 109.46810 * 330.00394 * 16 14 12 20 20 C 1.52994 * 109.47682 * 303.95092 * 8 7 5 21 21 C 1.52995 * 117.52274 * 228.44841 * 20 8 7 22 22 C 1.53001 * 117.49975 * 297.08334 * 20 8 7 23 23 H 1.08998 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46843 * 299.99824 * 1 2 3 25 25 H 1.09001 * 109.47134 * 59.99420 * 1 2 3 26 26 H 1.08997 * 109.46550 * 240.00720 * 2 1 3 27 27 H 1.08996 * 109.47315 * 120.00135 * 2 1 3 28 28 H 1.09002 * 109.47039 * 60.00417 * 4 3 2 29 29 H 1.08998 * 109.47021 * 300.00143 * 4 3 2 30 30 H 0.97001 * 119.99979 * 5.20019 * 7 5 4 31 31 H 1.09003 * 109.46706 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.47099 * 299.99868 * 9 8 7 33 33 H 1.08993 * 109.46980 * 60.00226 * 9 8 7 34 34 H 1.09004 * 109.47388 * 179.97438 * 10 8 7 35 35 H 1.08993 * 109.47268 * 299.99898 * 10 8 7 36 36 H 0.96996 * 120.00435 * 359.97438 * 11 10 8 37 37 H 0.97003 * 120.00431 * 180.02562 * 15 14 12 38 38 H 1.09009 * 115.55026 * 82.74337 * 20 8 7 39 39 H 1.09002 * 117.50479 * 214.96757 * 21 20 8 40 40 H 1.08997 * 117.49803 * 359.97438 * 21 20 8 41 41 H 1.08998 * 117.49554 * 359.96562 * 22 20 8 42 42 H 1.08998 * 117.50237 * 144.97406 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1209 3.2664 -0.0013 8 6 5.5000 4.6768 0.1129 9 6 7.0194 4.8082 -0.0112 10 6 5.0507 5.2172 1.4720 11 7 5.6961 4.4500 2.5402 12 6 5.4433 4.7549 3.8510 13 1 4.7683 5.5612 4.0973 14 6 6.0552 4.0283 4.8631 15 7 5.8118 4.3211 6.1231 16 14 7.2231 2.6341 4.4372 17 1 8.6054 3.1642 4.3215 18 1 7.1756 1.6044 5.5061 19 1 6.8167 2.0253 3.1451 20 6 4.8261 5.4781 -1.0026 21 6 5.7019 6.4345 -1.8143 22 6 5.2011 5.1337 -2.4454 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8333 0.9768 -0.8909 29 1 3.8341 0.9765 0.8891 30 1 5.8067 2.5845 -0.0771 31 1 7.3014 5.8576 0.0743 32 1 7.4995 4.2374 0.7837 33 1 7.3394 4.4232 -0.9793 34 1 5.3331 6.2665 1.5572 35 1 3.9684 5.1236 1.5604 36 1 6.3020 3.7255 2.3190 37 1 6.2396 3.8136 6.8304 38 1 3.7968 5.7802 -0.8086 39 1 5.2490 7.3658 -2.1544 40 1 6.7586 6.4934 -1.5535 41 1 5.9284 4.3367 -2.5998 42 1 4.4186 5.2090 -3.2005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267848711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:27 Heat of formation + Delta-G solvation = -63.312658 kcal Electronic energy + Delta-G solvation = -21896.748493 eV Core-core repulsion = 18684.561980 eV Total energy + Delta-G solvation = -3212.186512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41787 -39.39511 -38.18717 -36.74311 -35.07286 -33.46963 -32.43743 -31.30488 -28.40611 -27.94543 -25.36660 -23.70491 -23.37818 -22.83004 -21.94909 -20.36047 -19.61806 -18.24805 -17.80724 -17.39035 -17.08620 -16.61321 -16.41104 -15.74374 -15.54720 -15.44207 -14.90112 -14.77606 -14.14785 -13.85285 -13.71982 -13.69010 -13.40518 -13.22028 -13.14554 -12.83017 -12.44929 -12.31104 -12.25573 -12.18474 -12.08472 -11.85857 -11.81546 -11.34597 -11.06445 -11.00703 -10.66580 -10.47382 -9.98370 -9.30235 -8.03165 -5.37533 1.32211 1.41234 1.48119 1.68350 1.89588 2.47788 2.89110 3.18288 3.27495 3.41673 3.76573 3.91132 4.01533 4.03114 4.13984 4.16522 4.18446 4.30840 4.33504 4.34592 4.48117 4.52064 4.77310 4.80474 4.84477 4.90248 4.97400 5.01079 5.03194 5.11943 5.24399 5.26056 5.31467 5.40630 5.62118 5.73492 6.12453 6.19131 6.67523 7.06303 7.38260 7.78676 8.05062 9.19089 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.007501 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.015047 B = 3731.949309 C = 5472.680733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.046 3.954 5 C 0.511 3.489 6 O -0.560 6.560 7 N -0.706 5.706 8 C 0.208 3.792 9 C -0.151 4.151 10 C 0.152 3.848 11 N -0.742 5.742 12 C -0.239 4.239 13 H 0.041 0.959 14 C -0.067 4.067 15 N -0.987 5.987 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.242 1.242 20 C -0.170 4.170 21 C -0.167 4.167 22 C -0.154 4.154 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.413 0.587 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.027 0.973 35 H 0.007 0.993 36 H 0.369 0.631 37 H 0.258 0.742 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -9.482 -21.510 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.321 6.321 4 C -0.034 4.034 5 C 0.298 3.702 6 O -0.438 6.438 7 N -0.360 5.360 8 C 0.122 3.878 9 C -0.208 4.208 10 C 0.024 3.976 11 N -0.389 5.389 12 C -0.370 4.370 13 H 0.059 0.941 14 C -0.258 4.258 15 N -0.638 5.638 16 Si 0.787 3.213 17 H -0.196 1.196 18 H -0.223 1.223 19 H -0.166 1.166 20 C -0.190 4.190 21 C -0.204 4.204 22 C -0.191 4.191 23 H 0.117 0.883 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.249 0.751 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.204 0.796 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.551 -8.597 -21.333 23.007 hybrid contribution 0.469 -0.839 0.858 1.288 sum 1.020 -9.436 -20.476 22.568 Atomic orbital electron populations 1.21775 0.93212 1.03518 1.02289 1.22789 0.96319 0.82134 1.01586 1.87992 1.19739 1.28689 1.95730 1.22317 0.83445 0.93095 1.04529 1.20723 0.82867 0.91334 0.75299 1.90666 1.50772 1.53057 1.49286 1.45820 1.06777 1.08617 1.74760 1.19861 0.95721 0.80289 0.91882 1.22152 0.91043 1.04262 1.03374 1.21004 0.95037 0.94264 0.87286 1.42424 1.55146 1.39976 1.01306 1.18982 1.21539 1.13048 0.83388 0.94087 1.25625 1.02791 1.02855 0.94545 1.69923 1.49212 1.45029 0.99615 0.85323 0.79037 0.78698 0.78223 1.19624 1.22343 1.16607 1.22292 0.99457 1.04523 0.92695 1.23273 1.00680 0.94171 1.02315 1.22878 1.03274 0.99449 0.93529 0.88282 0.93467 0.92305 0.90794 0.92514 0.86598 0.89394 0.75071 0.89838 0.92272 0.88670 0.95474 0.97539 0.79634 0.93300 0.90256 0.88491 0.86469 0.87200 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 0.97 6.66 71.98 0.48 1.45 16 3 O -0.40 -12.15 9.88 -129.94 -1.28 -13.43 16 4 C 0.05 1.14 6.42 71.24 0.46 1.60 16 5 C 0.51 16.79 7.32 87.66 0.64 17.44 16 6 O -0.56 -24.08 13.32 15.98 0.21 -23.87 16 7 N -0.71 -19.27 4.71 -422.93 -1.99 -21.26 16 8 C 0.21 6.28 0.54 3.60 0.00 6.28 16 9 C -0.15 -3.49 7.04 71.98 0.51 -2.98 16 10 C 0.15 6.49 5.02 86.38 0.43 6.92 16 11 N -0.74 -35.61 4.98 -343.46 -1.71 -37.32 16 12 C -0.24 -14.33 10.47 84.03 0.88 -13.45 16 13 H 0.04 2.79 8.06 -2.91 -0.02 2.76 16 14 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 15 N -0.99 -64.98 13.97 21.65 0.30 -64.67 16 16 Si 0.96 44.38 27.74 68.60 1.90 46.28 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 19 H -0.24 -9.52 6.52 99.48 0.65 -8.87 16 20 C -0.17 -4.83 4.05 -10.80 -0.04 -4.88 16 21 C -0.17 -3.49 9.62 30.59 0.29 -3.20 16 22 C -0.15 -3.20 9.81 30.60 0.30 -2.90 16 23 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.41 8.06 8.48 -92.71 -0.79 7.27 16 31 H 0.08 1.90 6.84 -2.39 -0.02 1.88 16 32 H 0.06 1.49 6.86 -2.39 -0.02 1.47 16 33 H 0.09 1.50 7.01 -2.39 -0.02 1.48 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.01 0.33 6.64 -2.39 -0.02 0.32 16 36 H 0.37 15.88 4.21 -92.71 -0.39 15.49 16 37 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.08 2.88 7.18 -2.38 -0.02 2.86 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.12 2.07 5.87 -2.39 -0.01 2.05 16 41 H 0.11 1.83 7.42 -2.39 -0.02 1.82 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -82.44 336.35 2.37 -80.07 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.22 Total: 33.63 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 5.16 Total: 0.58 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -3.40 Total: -123.26 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.07 Total: -37.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Total: -82.44 2.37 -80.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267848711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.754 kcal (2) G-P(sol) polarization free energy of solvation -82.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds