Wall clock time and date at job start Mon Mar 30 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99926 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99773 * 179.97438 * 5 4 3 8 8 C 1.46930 * 120.63268 * 0.02562 * 7 5 4 9 9 C 1.53184 * 108.77660 * 126.36561 * 8 7 5 10 10 C 1.53038 * 109.31344 * 54.63549 * 9 8 7 11 11 H 1.09000 * 109.46247 * 58.65229 * 10 9 8 12 12 N 1.46503 * 109.46204 * 178.62819 * 10 9 8 13 13 C 1.36941 * 119.99708 * 274.99727 * 12 10 9 14 14 H 1.07991 * 120.00145 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99727 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99679 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99971 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47005 * 89.99856 * 17 15 13 19 19 H 1.48505 * 109.46994 * 209.99430 * 17 15 13 20 20 H 1.48500 * 109.47222 * 329.99670 * 17 15 13 21 21 C 1.53040 * 109.53891 * 298.63122 * 10 9 8 22 22 H 1.08997 * 109.49744 * 301.41729 * 21 10 9 23 23 C 1.52998 * 109.50122 * 181.34814 * 21 10 9 24 24 C 1.46925 * 120.62668 * 179.72047 * 7 5 4 25 25 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 27 27 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 29 29 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 30 30 H 1.09001 * 109.47103 * 300.00246 * 4 3 2 31 31 H 1.09004 * 109.47054 * 59.99750 * 4 3 2 32 32 H 1.09002 * 109.58338 * 246.15738 * 8 7 5 33 33 H 1.09000 * 109.58304 * 6.43047 * 8 7 5 34 34 H 1.09003 * 109.49534 * 174.58341 * 9 8 7 35 35 H 1.08999 * 109.50114 * 294.64751 * 9 8 7 36 36 H 0.97000 * 120.00300 * 94.99888 * 12 10 9 37 37 H 0.96999 * 119.99738 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.47212 * 60.00239 * 23 21 10 39 39 H 1.08995 * 109.47153 * 180.02562 * 23 21 10 40 40 H 1.09000 * 109.47374 * 300.00146 * 23 21 10 41 41 H 1.09003 * 109.58897 * 353.41826 * 24 7 5 42 42 H 1.08999 * 109.58453 * 113.85123 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0005 7 7 5.1209 3.2663 0.0008 8 6 6.1723 2.2399 0.0019 9 6 7.1267 2.5105 -1.1653 10 6 7.6494 3.9457 -1.0695 11 1 8.1593 4.0836 -0.1160 12 7 8.5880 4.1975 -2.1658 13 6 9.9054 3.8483 -2.0331 14 1 10.2524 3.3868 -1.1205 15 6 10.7946 4.0864 -3.0721 16 7 12.0608 3.7503 -2.9447 17 14 10.1942 4.8840 -4.6510 18 1 10.3173 6.3596 -4.5380 19 1 11.0160 4.4046 -5.7913 20 1 8.7722 4.5219 -4.8788 21 6 6.4773 4.9248 -1.1672 22 1 5.9520 4.7706 -2.1097 23 6 7.0041 6.3599 -1.1051 24 6 5.5153 4.6816 -0.0060 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9764 -0.8892 32 1 6.7230 2.2820 0.9416 33 1 5.7209 1.2545 -0.1132 34 1 7.9643 1.8145 -1.1192 35 1 6.5955 2.3784 -2.1079 36 1 8.2762 4.6117 -2.9857 37 1 12.6822 3.9170 -3.6706 38 1 7.6904 6.5313 -1.9345 39 1 6.1689 7.0568 -1.1742 40 1 7.5283 6.5141 -0.1619 41 1 4.6310 5.3069 -0.1290 42 1 6.0114 4.9272 0.9330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268123161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:53 Heat of formation + Delta-G solvation = -72.258304 kcal Electronic energy + Delta-G solvation = -21422.287451 eV Core-core repulsion = 18209.713027 eV Total energy + Delta-G solvation = -3212.574424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25883 -38.33601 -37.32647 -34.78029 -33.03638 -31.76451 -31.56665 -29.91612 -28.39483 -26.02317 -24.81581 -23.05190 -22.60577 -21.60911 -20.16580 -19.15268 -17.64015 -17.33742 -16.66683 -16.58736 -15.68476 -15.10768 -14.96359 -14.44077 -14.18387 -13.82314 -13.69626 -13.36035 -13.02676 -12.74603 -12.69127 -12.52196 -12.41049 -11.97604 -11.80099 -11.64935 -11.49727 -11.43559 -11.07718 -10.93328 -10.73328 -10.55704 -10.26574 -9.93785 -9.81128 -9.67890 -9.62009 -8.96773 -8.57682 -7.31703 -5.81861 -3.17372 2.58260 2.67666 3.34144 3.37476 3.42611 3.67576 4.45911 4.54921 4.74490 4.80530 4.92159 4.96975 5.01314 5.06524 5.07143 5.13198 5.21073 5.36837 5.41600 5.48959 5.57496 5.62565 5.66247 5.81513 5.84535 5.94550 5.98937 6.08091 6.23909 6.25616 6.36371 6.46570 6.64524 6.72413 6.84852 6.90841 7.40733 7.93668 8.17652 8.37372 9.15526 9.88414 10.08314 11.36411 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028836 B = 0.003994 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.778683 B = 7009.062639 C = 7351.846872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.046 3.954 5 C 0.516 3.484 6 O -0.529 6.529 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.153 4.153 10 C 0.189 3.811 11 H 0.058 0.942 12 N -0.745 5.745 13 C -0.243 4.243 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.934 5.934 17 Si 0.882 3.118 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.115 4.115 22 H 0.068 0.932 23 C -0.137 4.137 24 C 0.123 3.877 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 -6.220 7.025 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.034 4.034 5 C 0.303 3.697 6 O -0.404 6.404 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.194 4.194 10 C 0.079 3.921 11 H 0.076 0.924 12 N -0.387 5.387 13 C -0.372 4.372 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.581 5.581 17 Si 0.712 3.288 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.135 4.135 22 H 0.087 0.913 23 C -0.195 4.195 24 C 0.000 4.000 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.014 -5.681 7.109 20.182 hybrid contribution 0.092 0.093 -1.308 1.315 sum -17.922 -5.588 5.801 19.649 Atomic orbital electron populations 1.21726 0.93452 1.02178 1.03431 1.22543 0.95937 0.83462 1.00231 1.88013 1.18717 1.26285 1.95431 1.22245 0.83628 0.95026 1.02503 1.20163 0.82343 0.90465 0.76777 1.90697 1.48976 1.51768 1.49005 1.48114 1.04991 1.08006 1.73066 1.21902 0.89262 0.90165 1.00415 1.22663 0.98443 1.01654 0.96664 1.20164 0.88648 0.90411 0.92880 0.92405 1.42783 1.06453 1.74348 1.15108 1.19046 0.82747 1.33687 1.01762 0.89192 1.24660 0.95338 1.01099 0.97922 1.69697 1.02364 1.53018 1.33038 0.86593 0.77862 0.79653 0.84654 1.21040 1.21791 1.20378 1.21718 0.96548 0.96915 0.98317 0.91328 1.21664 1.00409 0.94319 1.03086 1.21586 0.98969 0.80811 0.98605 0.91734 0.91694 0.91005 0.93146 0.93203 0.90320 0.90185 0.90949 0.90623 0.89953 0.92241 0.80605 0.93045 0.91441 0.93490 0.92497 0.89232 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.48 6.66 37.16 0.25 0.72 16 3 O -0.37 -4.69 9.88 -55.14 -0.54 -5.24 16 4 C 0.05 0.51 4.76 36.01 0.17 0.68 16 5 C 0.52 7.51 7.78 -10.98 -0.09 7.43 16 6 O -0.53 -9.79 15.91 -14.35 -0.23 -10.02 16 7 N -0.61 -8.14 2.98 -173.05 -0.52 -8.65 16 8 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 9 C -0.15 -2.34 5.66 -26.62 -0.15 -2.49 16 10 C 0.19 3.32 2.20 -67.89 -0.15 3.17 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 12 N -0.75 -16.51 4.21 -53.38 -0.22 -16.73 16 13 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 14 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 15 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 16 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 17 Si 0.88 21.64 27.74 -169.99 -4.71 16.92 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 21 C -0.11 -1.76 2.44 -90.74 -0.22 -1.98 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 23 C -0.14 -2.04 9.03 37.16 0.34 -1.71 16 24 C 0.12 1.70 5.69 -3.95 -0.02 1.68 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 31 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.36 8.07 5.36 -40.82 -0.22 7.85 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -33.05 335.61 -7.33 -40.39 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.17 Total: 4.69 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.23 Total: 1.38 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.03 Total: -53.18 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.77 Total: -15.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.05 -7.33 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268123161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.871 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds