Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99926 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99773 * 179.97438 * 5 4 3 8 8 C 1.46930 * 120.63268 * 0.02562 * 7 5 4 9 9 C 1.53184 * 108.77660 * 126.36561 * 8 7 5 10 10 C 1.53038 * 109.31344 * 54.63549 * 9 8 7 11 11 H 1.09000 * 109.46247 * 58.65229 * 10 9 8 12 12 N 1.46503 * 109.46204 * 178.62819 * 10 9 8 13 13 C 1.36941 * 119.99708 * 274.99727 * 12 10 9 14 14 H 1.07991 * 120.00145 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99727 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99679 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99971 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47005 * 89.99856 * 17 15 13 19 19 H 1.48505 * 109.46994 * 209.99430 * 17 15 13 20 20 H 1.48500 * 109.47222 * 329.99670 * 17 15 13 21 21 C 1.53040 * 109.53891 * 298.63122 * 10 9 8 22 22 H 1.08997 * 109.49744 * 301.41729 * 21 10 9 23 23 C 1.52998 * 109.50122 * 181.34814 * 21 10 9 24 24 C 1.46925 * 120.62668 * 179.72047 * 7 5 4 25 25 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 27 27 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 29 29 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 30 30 H 1.09001 * 109.47103 * 300.00246 * 4 3 2 31 31 H 1.09004 * 109.47054 * 59.99750 * 4 3 2 32 32 H 1.09002 * 109.58338 * 246.15738 * 8 7 5 33 33 H 1.09000 * 109.58304 * 6.43047 * 8 7 5 34 34 H 1.09003 * 109.49534 * 174.58341 * 9 8 7 35 35 H 1.08999 * 109.50114 * 294.64751 * 9 8 7 36 36 H 0.97000 * 120.00300 * 94.99888 * 12 10 9 37 37 H 0.96999 * 119.99738 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.47212 * 60.00239 * 23 21 10 39 39 H 1.08995 * 109.47153 * 180.02562 * 23 21 10 40 40 H 1.09000 * 109.47374 * 300.00146 * 23 21 10 41 41 H 1.09003 * 109.58897 * 353.41826 * 24 7 5 42 42 H 1.08999 * 109.58453 * 113.85123 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0005 7 7 5.1209 3.2663 0.0008 8 6 6.1723 2.2399 0.0019 9 6 7.1267 2.5105 -1.1653 10 6 7.6494 3.9457 -1.0695 11 1 8.1593 4.0836 -0.1160 12 7 8.5880 4.1975 -2.1658 13 6 9.9054 3.8483 -2.0331 14 1 10.2524 3.3868 -1.1205 15 6 10.7946 4.0864 -3.0721 16 7 12.0608 3.7503 -2.9447 17 14 10.1942 4.8840 -4.6510 18 1 10.3173 6.3596 -4.5380 19 1 11.0160 4.4046 -5.7913 20 1 8.7722 4.5219 -4.8788 21 6 6.4773 4.9248 -1.1672 22 1 5.9520 4.7706 -2.1097 23 6 7.0041 6.3599 -1.1051 24 6 5.5153 4.6816 -0.0060 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9764 -0.8892 32 1 6.7230 2.2820 0.9416 33 1 5.7209 1.2545 -0.1132 34 1 7.9643 1.8145 -1.1192 35 1 6.5955 2.3784 -2.1079 36 1 8.2762 4.6117 -2.9857 37 1 12.6822 3.9170 -3.6706 38 1 7.6904 6.5313 -1.9345 39 1 6.1689 7.0568 -1.1742 40 1 7.5283 6.5141 -0.1619 41 1 4.6310 5.3069 -0.1290 42 1 6.0114 4.9272 0.9330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268123161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = -94.115309 kcal Electronic energy + Delta-G solvation = -21423.235242 eV Core-core repulsion = 18209.713027 eV Total energy + Delta-G solvation = -3213.522215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37495 -39.40876 -38.39176 -36.28636 -34.55553 -33.26041 -32.38331 -31.51413 -29.36656 -27.27037 -26.23699 -24.11009 -23.67583 -23.01455 -21.50545 -20.37403 -19.41005 -18.39303 -17.59996 -17.41364 -16.78337 -16.68321 -16.05566 -16.00204 -15.34460 -15.19382 -14.85750 -14.62953 -14.43239 -13.99570 -13.78157 -13.59500 -13.43134 -13.26626 -12.96697 -12.95053 -12.83066 -12.45603 -12.31706 -12.16265 -12.12239 -11.99546 -11.87643 -11.75808 -11.17300 -10.97399 -10.75755 -10.66077 -9.71679 -9.26551 -7.99524 -5.31130 1.38632 1.39876 1.46975 1.51272 1.71692 2.49665 2.85925 3.32112 3.49860 3.56837 3.79222 3.98160 4.01964 4.14610 4.16438 4.26964 4.28972 4.36106 4.37324 4.48153 4.52038 4.60712 4.73439 4.78890 4.82877 4.84459 4.93928 5.01230 5.04060 5.15266 5.25490 5.27881 5.37525 5.46983 5.60167 5.81347 6.10764 6.24956 6.37910 7.10196 7.10939 7.88094 8.06006 9.22052 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028836 B = 0.003994 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.778683 B = 7009.062639 C = 7351.846872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.047 3.953 5 C 0.510 3.490 6 O -0.576 6.576 7 N -0.605 5.605 8 C 0.112 3.888 9 C -0.146 4.146 10 C 0.181 3.819 11 H 0.051 0.949 12 N -0.748 5.748 13 C -0.216 4.216 14 H 0.063 0.937 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.946 3.054 18 H -0.281 1.281 19 H -0.300 1.300 20 H -0.257 1.257 21 C -0.104 4.104 22 H 0.060 0.940 23 C -0.135 4.135 24 C 0.126 3.874 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.525 -7.255 7.424 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.322 6.322 4 C -0.032 4.032 5 C 0.299 3.701 6 O -0.456 6.456 7 N -0.338 5.338 8 C -0.010 4.010 9 C -0.187 4.187 10 C 0.073 3.927 11 H 0.069 0.931 12 N -0.391 5.391 13 C -0.347 4.347 14 H 0.081 0.919 15 C -0.254 4.254 16 N -0.636 5.636 17 Si 0.775 3.225 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.182 1.182 21 C -0.124 4.124 22 H 0.079 0.921 23 C -0.193 4.193 24 C 0.003 3.997 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.195 0.805 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.923 -6.736 7.535 22.340 hybrid contribution 0.632 0.388 -1.326 1.520 sum -19.290 -6.349 6.209 21.236 Atomic orbital electron populations 1.21776 0.93227 1.03473 1.02405 1.22790 0.96243 0.81994 1.01770 1.87977 1.19611 1.28794 1.95769 1.22355 0.83426 0.92481 1.04939 1.20876 0.81913 0.91799 0.75503 1.90675 1.50219 1.53414 1.51251 1.48184 1.05262 1.08013 1.72384 1.21975 0.88376 0.91312 0.99340 1.22472 0.98761 0.99176 0.98262 1.20426 0.88613 0.92678 0.90968 0.93066 1.42811 1.05533 1.74324 1.16384 1.19011 0.84546 1.31006 1.00165 0.91865 1.25374 0.95495 1.03017 1.01526 1.69863 1.03843 1.55757 1.34089 0.85543 0.78170 0.78532 0.80298 1.20794 1.22685 1.18168 1.21586 0.95659 0.96453 0.98708 0.92127 1.21641 1.00749 0.94635 1.02297 1.21495 0.98209 0.81527 0.98428 0.92601 0.92892 0.88540 0.91803 0.91309 0.87129 0.88045 0.89346 0.87003 0.91284 0.92701 0.80541 0.93559 0.93606 0.91429 0.92174 0.89950 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.40 -9.43 9.88 -129.94 -1.28 -10.71 16 4 C 0.05 0.88 4.76 71.24 0.34 1.22 16 5 C 0.51 13.71 7.78 87.66 0.68 14.39 16 6 O -0.58 -20.85 15.91 16.01 0.25 -20.60 16 7 N -0.60 -14.59 2.98 -819.79 -2.44 -17.04 16 8 C 0.11 2.24 6.34 86.36 0.55 2.79 16 9 C -0.15 -4.16 5.66 30.67 0.17 -3.98 16 10 C 0.18 6.13 2.20 45.02 0.10 6.23 16 11 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 12 N -0.75 -32.60 4.21 -322.81 -1.36 -33.96 16 13 C -0.22 -11.61 10.41 84.03 0.87 -10.74 16 14 H 0.06 3.69 8.06 -2.92 -0.02 3.67 16 15 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 16 N -0.98 -61.72 13.97 21.65 0.30 -61.42 16 17 Si 0.95 44.93 27.74 68.60 1.90 46.83 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 20 H -0.26 -11.14 6.52 99.48 0.65 -10.49 16 21 C -0.10 -3.02 2.44 -10.87 -0.03 -3.05 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 C -0.14 -3.86 9.03 71.98 0.65 -3.21 16 24 C 0.13 3.25 5.69 86.21 0.49 3.74 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 1.36 7.94 -2.39 -0.02 1.34 16 31 H 0.10 1.47 7.70 -2.38 -0.02 1.45 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.49 5.93 -2.39 -0.01 1.48 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.36 15.69 5.36 -92.71 -0.50 15.19 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.04 1.50 7.36 -2.38 -0.02 1.48 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 2.31 7.01 -2.39 -0.02 2.29 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -73.42 335.61 3.32 -70.10 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.43 Total: 22.65 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.52 Total: 4.14 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.50 Total: -112.42 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.03 Total: -31.31 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Total: -73.42 3.32 -70.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268123161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.014 kcal (2) G-P(sol) polarization free energy of solvation -73.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds