Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47171 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.62694 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77757 * 233.58761 * 8 7 5 10 10 C 1.53041 * 109.31182 * 305.36758 * 9 8 7 11 11 H 1.09001 * 109.45985 * 181.37032 * 10 9 8 12 12 N 1.46493 * 109.46203 * 301.34301 * 10 9 8 13 13 C 1.36943 * 120.00252 * 275.00103 * 12 10 9 14 14 H 1.08002 * 119.99555 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00286 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00035 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99918 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47260 * 89.99875 * 17 15 13 19 19 H 1.48503 * 109.46998 * 210.00002 * 17 15 13 20 20 H 1.48500 * 109.46969 * 329.99927 * 17 15 13 21 21 C 1.53041 * 109.53878 * 61.36234 * 10 9 8 22 22 H 1.09004 * 109.49652 * 58.61950 * 21 10 9 23 23 C 1.53000 * 109.49946 * 178.68180 * 21 10 9 24 24 C 1.46922 * 120.63244 * 179.72194 * 7 5 4 25 25 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 26 26 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 28 28 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 29 29 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 31 31 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 32 32 H 1.09004 * 109.58973 * 353.37467 * 8 7 5 33 33 H 1.09005 * 109.58614 * 113.66200 * 8 7 5 34 34 H 1.08997 * 109.49594 * 65.31573 * 9 8 7 35 35 H 1.08999 * 109.49706 * 185.41576 * 9 8 7 36 36 H 0.97008 * 120.00171 * 94.99862 * 12 10 9 37 37 H 0.96998 * 119.99709 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.47103 * 59.99984 * 23 21 10 39 39 H 1.09000 * 109.46859 * 180.02562 * 23 21 10 40 40 H 1.09001 * 109.46808 * 299.99679 * 23 21 10 41 41 H 1.09002 * 109.58436 * 246.19706 * 24 7 5 42 42 H 1.09002 * 109.58650 * 6.61866 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1209 3.2664 0.0013 8 6 6.1722 2.2400 0.0013 9 6 7.1264 2.5116 1.1686 10 6 7.6491 3.9467 1.0717 11 1 8.3472 4.1348 1.8875 12 7 8.3347 4.1309 -0.2096 13 6 9.6527 3.7816 -0.3375 14 1 10.1867 3.3707 0.5066 15 6 10.3023 3.9557 -1.5518 16 7 11.5691 3.6205 -1.6744 17 14 9.3788 4.6671 -3.0114 18 1 9.5142 6.1458 -3.0099 19 1 9.9453 4.1195 -4.2702 20 1 7.9428 4.3015 -2.9146 21 6 6.4769 4.9259 1.1681 22 1 5.9516 4.7729 2.1109 23 6 7.0037 6.3609 1.1042 24 6 5.5153 4.6817 -0.0043 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9765 -0.8892 32 1 5.7211 1.2548 0.1198 33 1 6.7217 2.2796 -0.9393 34 1 6.5947 2.3809 2.1111 35 1 7.9640 1.8155 1.1234 36 1 7.8552 4.5003 -0.9677 37 1 12.0231 3.7425 -2.5229 38 1 7.5279 6.5138 0.1608 39 1 6.1685 7.0579 1.1733 40 1 7.6899 6.5333 1.9333 41 1 6.0138 4.9183 -0.9443 42 1 4.6306 5.3080 0.1103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268123164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = -69.788727 kcal Electronic energy + Delta-G solvation = -21839.773426 eV Core-core repulsion = 18627.306090 eV Total energy + Delta-G solvation = -3212.467335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21330 -38.35755 -37.30295 -34.44522 -32.97817 -31.72299 -31.51061 -29.79976 -28.37423 -25.98239 -24.73582 -23.19467 -23.00593 -21.71983 -19.87206 -18.31815 -17.91433 -17.30176 -16.58922 -16.49092 -15.59040 -15.14220 -14.77064 -14.49366 -14.14524 -13.78993 -13.67154 -13.51138 -12.96067 -12.71996 -12.66243 -12.60646 -12.35364 -11.78458 -11.63078 -11.59617 -11.45852 -11.40828 -11.02944 -10.98274 -10.64340 -10.57966 -10.24980 -9.89347 -9.87878 -9.60508 -9.56925 -8.99885 -8.39408 -7.32734 -5.82889 -3.18360 2.68743 2.76685 3.31003 3.34497 3.41148 3.76201 4.52802 4.55199 4.78619 4.87856 5.00513 5.04087 5.07580 5.11159 5.13980 5.19911 5.31116 5.40435 5.46253 5.56360 5.60326 5.66194 5.72809 5.83294 5.87779 5.90900 6.04893 6.17699 6.25358 6.35652 6.42574 6.51036 6.62403 6.72146 6.81247 6.93283 7.54226 7.93507 8.27651 8.36308 9.14421 9.87085 10.06881 11.35489 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004803 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.428778 B = 5828.302827 C = 6172.325229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.046 3.954 5 C 0.514 3.486 6 O -0.532 6.532 7 N -0.604 5.604 8 C 0.110 3.890 9 C -0.150 4.150 10 C 0.184 3.816 11 H 0.061 0.939 12 N -0.744 5.744 13 C -0.241 4.241 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.933 5.933 17 Si 0.878 3.122 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.112 4.112 22 H 0.072 0.928 23 C -0.138 4.138 24 C 0.119 3.881 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 -5.902 5.041 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.033 4.033 5 C 0.301 3.699 6 O -0.408 6.408 7 N -0.339 5.339 8 C -0.012 4.012 9 C -0.191 4.191 10 C 0.075 3.925 11 H 0.079 0.921 12 N -0.388 5.388 13 C -0.371 4.371 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.709 3.291 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.132 4.132 22 H 0.090 0.910 23 C -0.196 4.196 24 C -0.003 4.003 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.582 -5.364 5.067 18.149 hybrid contribution -0.148 0.058 -1.208 1.218 sum -16.730 -5.306 3.859 17.970 Atomic orbital electron populations 1.21723 0.93485 1.02137 1.03410 1.22538 0.95899 0.83540 1.00212 1.88009 1.18797 1.26206 1.95429 1.22239 0.83490 0.95125 1.02483 1.20148 0.82376 0.90419 0.76923 1.90686 1.49022 1.51756 1.49368 1.48095 1.04981 1.08064 1.72710 1.21787 0.88668 0.89317 1.01411 1.22507 0.98745 1.01657 0.96195 1.20182 0.91550 0.90700 0.90103 0.92092 1.42856 1.10221 1.77349 1.08351 1.19055 0.85096 1.35154 0.97822 0.89149 1.24636 0.95645 1.01281 0.97320 1.69688 1.09373 1.53720 1.25278 0.86666 0.79205 0.79436 0.83821 1.21001 1.21753 1.20513 1.21836 0.96572 0.96789 0.97979 0.90951 1.21677 1.00272 0.94447 1.03225 1.21732 0.98739 0.80943 0.98887 0.91734 0.91035 0.91729 0.93202 0.93205 0.90273 0.90315 0.91108 0.89979 0.92830 0.90101 0.80574 0.93047 0.91705 0.93464 0.92267 0.91428 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.05 0.51 6.66 37.16 0.25 0.76 16 3 O -0.37 -4.99 9.88 -55.14 -0.54 -5.54 16 4 C 0.05 0.57 4.76 36.01 0.17 0.74 16 5 C 0.51 8.21 7.78 -10.98 -0.09 8.12 16 6 O -0.53 -10.45 15.91 -14.35 -0.23 -10.68 16 7 N -0.60 -9.29 2.97 -172.52 -0.51 -9.80 16 8 C 0.11 1.59 6.08 -3.71 -0.02 1.56 16 9 C -0.15 -2.27 5.78 -26.61 -0.15 -2.43 16 10 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 11 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 12 N -0.74 -15.90 3.45 -53.39 -0.18 -16.08 16 13 C -0.24 -6.30 10.41 -15.06 -0.16 -6.45 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -28.23 13.97 55.49 0.78 -27.46 16 17 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 21 C -0.11 -1.71 2.68 -90.29 -0.24 -1.95 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 C -0.14 -2.05 9.05 37.16 0.34 -1.72 16 24 C 0.12 1.91 5.44 -3.51 -0.02 1.89 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 31 H 0.08 0.82 7.94 -51.93 -0.41 0.41 16 32 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 33 H 0.08 1.37 7.74 -51.93 -0.40 0.96 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.36 7.78 3.78 -40.82 -0.15 7.62 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.16 6.64 -51.93 -0.34 0.82 16 42 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -32.17 331.73 -7.23 -39.40 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.01 Total: 5.70 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 0.19 Total: 2.83 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.08 Total: -53.34 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.77 Total: -16.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.17 -7.23 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268123164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.385 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds