Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47171 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.62694 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77757 * 233.58761 * 8 7 5 10 10 C 1.53041 * 109.31182 * 305.36758 * 9 8 7 11 11 H 1.09001 * 109.45985 * 181.37032 * 10 9 8 12 12 N 1.46493 * 109.46203 * 301.34301 * 10 9 8 13 13 C 1.36943 * 120.00252 * 275.00103 * 12 10 9 14 14 H 1.08002 * 119.99555 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00286 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00035 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99918 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47260 * 89.99875 * 17 15 13 19 19 H 1.48503 * 109.46998 * 210.00002 * 17 15 13 20 20 H 1.48500 * 109.46969 * 329.99927 * 17 15 13 21 21 C 1.53041 * 109.53878 * 61.36234 * 10 9 8 22 22 H 1.09004 * 109.49652 * 58.61950 * 21 10 9 23 23 C 1.53000 * 109.49946 * 178.68180 * 21 10 9 24 24 C 1.46922 * 120.63244 * 179.72194 * 7 5 4 25 25 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 26 26 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 28 28 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 29 29 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 31 31 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 32 32 H 1.09004 * 109.58973 * 353.37467 * 8 7 5 33 33 H 1.09005 * 109.58614 * 113.66200 * 8 7 5 34 34 H 1.08997 * 109.49594 * 65.31573 * 9 8 7 35 35 H 1.08999 * 109.49706 * 185.41576 * 9 8 7 36 36 H 0.97008 * 120.00171 * 94.99862 * 12 10 9 37 37 H 0.96998 * 119.99709 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.47103 * 59.99984 * 23 21 10 39 39 H 1.09000 * 109.46859 * 180.02562 * 23 21 10 40 40 H 1.09001 * 109.46808 * 299.99679 * 23 21 10 41 41 H 1.09002 * 109.58436 * 246.19706 * 24 7 5 42 42 H 1.09002 * 109.58650 * 6.61866 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1209 3.2664 0.0013 8 6 6.1722 2.2400 0.0013 9 6 7.1264 2.5116 1.1686 10 6 7.6491 3.9467 1.0717 11 1 8.3472 4.1348 1.8875 12 7 8.3347 4.1309 -0.2096 13 6 9.6527 3.7816 -0.3375 14 1 10.1867 3.3707 0.5066 15 6 10.3023 3.9557 -1.5518 16 7 11.5691 3.6205 -1.6744 17 14 9.3788 4.6671 -3.0114 18 1 9.5142 6.1458 -3.0099 19 1 9.9453 4.1195 -4.2702 20 1 7.9428 4.3015 -2.9146 21 6 6.4769 4.9259 1.1681 22 1 5.9516 4.7729 2.1109 23 6 7.0037 6.3609 1.1042 24 6 5.5153 4.6817 -0.0043 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9765 -0.8892 32 1 5.7211 1.2548 0.1198 33 1 6.7217 2.2796 -0.9393 34 1 6.5947 2.3809 2.1111 35 1 7.9640 1.8155 1.1234 36 1 7.8552 4.5003 -0.9677 37 1 12.0231 3.7425 -2.5229 38 1 7.5279 6.5138 0.1608 39 1 6.1685 7.0579 1.1733 40 1 7.6899 6.5333 1.9333 41 1 6.0138 4.9183 -0.9443 42 1 4.6306 5.3080 0.1103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268123164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = -90.429635 kcal Electronic energy + Delta-G solvation = -21840.668483 eV Core-core repulsion = 18627.306090 eV Total energy + Delta-G solvation = -3213.362392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44260 -39.50623 -38.41006 -35.97736 -34.55733 -33.17385 -32.38978 -31.46565 -29.40477 -27.28061 -26.04321 -24.95734 -23.68195 -23.04176 -21.12006 -19.89429 -19.59370 -18.39607 -17.59540 -17.44443 -16.70135 -16.64649 -16.24110 -15.81798 -15.53274 -15.12243 -15.04193 -14.65665 -14.47831 -13.97728 -13.81856 -13.61458 -13.32122 -13.26864 -13.02897 -12.92860 -12.69305 -12.48457 -12.32991 -12.16513 -12.05910 -11.97953 -11.93260 -11.67555 -11.21034 -10.97584 -10.75643 -10.67258 -9.69126 -9.23535 -7.97914 -5.28641 1.36645 1.38800 1.45274 1.50321 1.69751 2.49402 2.84410 3.34423 3.50730 3.61836 3.80662 3.97244 3.99712 4.11761 4.15237 4.23825 4.29358 4.32511 4.35788 4.46503 4.51294 4.60129 4.68117 4.78693 4.82633 4.93852 4.99965 5.03513 5.11955 5.16217 5.25280 5.26784 5.27897 5.42635 5.59103 5.85134 6.09945 6.26349 6.38304 7.08278 7.13057 7.90055 8.07994 9.23986 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004803 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.428778 B = 5828.302827 C = 6172.325229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.049 3.951 5 C 0.510 3.490 6 O -0.576 6.576 7 N -0.602 5.602 8 C 0.113 3.887 9 C -0.143 4.143 10 C 0.176 3.824 11 H 0.051 0.949 12 N -0.743 5.743 13 C -0.211 4.211 14 H 0.063 0.937 15 C -0.059 4.059 16 N -0.984 5.984 17 Si 0.939 3.061 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.257 1.257 21 C -0.100 4.100 22 H 0.091 0.909 23 C -0.137 4.137 24 C 0.119 3.881 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.361 0.639 37 H 0.255 0.745 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 -7.027 5.665 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.320 6.320 4 C -0.030 4.030 5 C 0.299 3.701 6 O -0.455 6.455 7 N -0.335 5.335 8 C -0.009 4.009 9 C -0.184 4.184 10 C 0.068 3.932 11 H 0.069 0.931 12 N -0.387 5.387 13 C -0.342 4.342 14 H 0.081 0.919 15 C -0.250 4.250 16 N -0.636 5.636 17 Si 0.768 3.232 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.182 1.182 21 C -0.120 4.120 22 H 0.109 0.891 23 C -0.195 4.195 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.196 0.804 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.740 -6.505 5.727 20.647 hybrid contribution 0.471 0.389 -1.276 1.414 sum -18.269 -6.116 4.452 19.773 Atomic orbital electron populations 1.21772 0.93104 1.03503 1.02428 1.22802 0.96318 0.81975 1.01763 1.87975 1.19446 1.28833 1.95761 1.22321 0.83479 0.92379 1.04859 1.20878 0.81768 0.91871 0.75584 1.90664 1.50104 1.53379 1.51387 1.48148 1.05291 1.07844 1.72264 1.21824 0.88335 0.90962 0.99785 1.22379 0.98815 0.99110 0.98072 1.20434 0.92006 0.93072 0.87722 0.93065 1.42827 1.08682 1.77156 1.10033 1.19008 0.86648 1.32163 0.96398 0.91869 1.25281 0.96396 1.03144 1.00213 1.69850 1.11329 1.56654 1.25729 0.85661 0.79047 0.78376 0.80117 1.21056 1.22738 1.18245 1.21744 0.95428 0.96270 0.98564 0.89093 1.21662 1.00909 0.94808 1.02095 1.21653 0.98514 0.81825 0.98405 0.92842 0.88486 0.92598 0.91776 0.91380 0.87294 0.88101 0.87077 0.92255 0.90005 0.91258 0.80439 0.93632 0.93874 0.91413 0.92003 0.92830 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.40 -9.95 9.88 -129.94 -1.28 -11.23 16 4 C 0.05 1.02 4.76 71.24 0.34 1.36 16 5 C 0.51 15.03 7.78 87.66 0.68 15.72 16 6 O -0.58 -21.96 15.91 16.01 0.25 -21.71 16 7 N -0.60 -16.97 2.97 -818.13 -2.43 -19.39 16 8 C 0.11 2.89 6.08 86.36 0.52 3.41 16 9 C -0.14 -3.95 5.78 30.67 0.18 -3.77 16 10 C 0.18 5.84 2.53 45.02 0.11 5.95 16 11 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 12 N -0.74 -31.15 3.45 -322.82 -1.11 -32.27 16 13 C -0.21 -11.08 10.41 84.03 0.87 -10.20 16 14 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 15 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 16 N -0.98 -61.11 13.97 21.65 0.30 -60.81 16 17 Si 0.94 44.44 27.74 68.60 1.90 46.34 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 21 C -0.10 -2.85 2.68 -10.58 -0.03 -2.88 16 22 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 23 C -0.14 -3.84 9.05 71.98 0.65 -3.19 16 24 C 0.12 3.60 5.44 86.50 0.47 4.07 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 1.63 7.69 -2.39 -0.02 1.61 16 31 H 0.10 1.67 7.94 -2.39 -0.02 1.65 16 32 H 0.11 1.96 5.93 -2.38 -0.01 1.95 16 33 H 0.06 1.83 7.74 -2.38 -0.02 1.81 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.36 15.17 3.78 -92.70 -0.35 14.82 16 37 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.04 1.39 7.54 -2.39 -0.02 1.37 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.77 6.64 -2.39 -0.02 1.75 16 42 H 0.08 2.66 7.00 -2.39 -0.02 2.64 16 Total: -1.00 -71.26 331.73 3.71 -67.55 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.58 Total: 24.09 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.49 Total: 7.42 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.24 Total: -112.47 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.03 Total: -32.93 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Total: -71.26 3.71 -67.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268123164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.881 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds