Wall clock time and date at job start Mon Mar 30 2020 01:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00171 * 2 1 4 4 H 1.07996 * 120.00330 * 199.26221 * 3 2 1 5 5 C 1.38819 * 119.99955 * 19.27202 * 3 2 1 6 6 N 1.31623 * 119.99666 * 12.66086 * 5 3 2 7 7 Si 1.86791 * 119.99960 * 192.66661 * 5 3 2 8 8 H 1.48503 * 109.47301 * 89.99634 * 7 5 3 9 9 H 1.48502 * 109.47230 * 209.99770 * 7 5 3 10 10 H 1.48502 * 109.47432 * 329.99656 * 7 5 3 11 11 C 1.46502 * 119.99898 * 180.28007 * 2 1 3 12 12 C 1.52996 * 109.47095 * 89.99974 * 11 2 1 13 13 N 1.46502 * 109.47095 * 180.02562 * 12 11 2 14 14 C 1.46498 * 120.00248 * 89.99602 * 13 12 11 15 15 C 1.34773 * 120.00163 * 270.00324 * 13 12 11 16 16 O 1.21288 * 120.00029 * 355.03419 * 15 13 12 17 17 C 1.50698 * 120.00344 * 175.04309 * 15 13 12 18 18 H 1.09006 * 109.52412 * 53.41566 * 17 15 13 19 19 C 1.53175 * 109.52554 * 173.60546 * 17 15 13 20 20 C 1.53178 * 109.03842 * 176.88484 * 19 17 15 21 21 C 1.53087 * 109.16409 * 303.01673 * 20 19 17 22 22 O 1.42908 * 109.41056 * 57.60806 * 21 20 19 23 23 C 1.42902 * 114.09859 * 298.83963 * 22 21 20 24 24 H 1.09004 * 109.47242 * 266.00881 * 1 2 3 25 25 H 1.09004 * 109.46754 * 26.00690 * 1 2 3 26 26 H 1.08994 * 109.47058 * 146.00807 * 1 2 3 27 27 H 0.96998 * 119.99250 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46788 * 209.99586 * 11 2 1 29 29 H 1.08999 * 109.47035 * 329.99544 * 11 2 1 30 30 H 1.08998 * 109.47335 * 299.99513 * 12 11 2 31 31 H 1.08998 * 109.47040 * 60.00060 * 12 11 2 32 32 H 1.09001 * 109.47023 * 84.34963 * 14 13 12 33 33 H 1.08998 * 109.47383 * 204.35195 * 14 13 12 34 34 H 1.09006 * 109.46954 * 324.35608 * 14 13 12 35 35 H 1.09001 * 109.54607 * 296.75242 * 19 17 15 36 36 H 1.09000 * 109.54815 * 57.01630 * 19 17 15 37 37 H 1.09005 * 109.51985 * 183.10982 * 20 19 17 38 38 H 1.08997 * 109.57406 * 62.95925 * 20 19 17 39 39 H 1.09000 * 109.48146 * 297.62805 * 21 20 19 40 40 H 1.08997 * 109.47955 * 177.58805 * 21 20 19 41 41 H 1.09000 * 109.47970 * 301.17737 * 23 22 21 42 42 H 1.09000 * 109.48728 * 181.15010 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1843 1.2121 -0.3085 5 6 1.5140 2.3544 0.3968 6 7 0.3478 2.2955 1.0043 7 14 2.3134 4.0104 0.0685 8 1 1.8765 4.5169 -1.2574 9 1 1.9089 4.9734 1.1240 10 1 3.7906 3.8575 0.0777 11 6 2.1975 -1.2687 -0.0062 12 6 2.4524 -1.7034 -1.4508 13 7 3.1844 -2.9724 -1.4570 14 6 2.4514 -4.2408 -1.4633 15 6 4.5321 -2.9730 -1.4568 16 8 5.1391 -1.9264 -1.5424 17 6 5.2851 -4.2741 -1.3504 18 1 4.9368 -4.9607 -2.1220 19 6 6.7836 -4.0147 -1.5327 20 6 7.5449 -5.3307 -1.3452 21 6 7.2189 -5.9077 0.0348 22 8 5.8069 -6.0957 0.1494 23 6 5.0463 -4.8919 0.0298 24 1 -0.3634 -0.0715 1.0252 25 1 -0.3633 0.9237 -0.4506 26 1 -0.3633 -0.8520 -0.5745 27 1 -0.0965 3.1120 1.2812 28 1 3.1499 -1.1409 0.5082 29 1 1.6084 -2.0308 0.5040 30 1 1.5001 -1.8312 -1.9653 31 1 3.0415 -0.9412 -1.9609 32 1 2.1821 -4.4997 -2.4873 33 1 3.0801 -5.0259 -1.0434 34 1 1.5464 -4.1405 -0.8640 35 1 6.9674 -3.6268 -2.5346 36 1 7.1210 -3.2896 -0.7921 37 1 8.6166 -5.1451 -1.4186 38 1 7.2444 -6.0395 -2.1168 39 1 7.5575 -5.2168 0.8069 40 1 7.7243 -6.8656 0.1568 41 1 5.3565 -4.1878 0.8019 42 1 3.9866 -5.1180 0.1485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268232135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:36 Heat of formation + Delta-G solvation = -53.549073 kcal Electronic energy + Delta-G solvation = -21689.363248 eV Core-core repulsion = 18477.600117 eV Total energy + Delta-G solvation = -3211.763131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48009 -38.62549 -36.14411 -34.95389 -33.74848 -32.01453 -31.11321 -28.49837 -26.59993 -25.85723 -25.29791 -24.52379 -23.09167 -20.89252 -20.30346 -18.91848 -17.04907 -16.67969 -16.57792 -16.42395 -15.75330 -15.28351 -14.85705 -14.40245 -14.15803 -13.84669 -13.56176 -13.27593 -13.00208 -12.91767 -12.67766 -12.50439 -12.26307 -11.86832 -11.72795 -11.28132 -11.23845 -11.06411 -10.88320 -10.82716 -10.57211 -10.42379 -10.20057 -9.88492 -9.82674 -9.77407 -9.44402 -8.63767 -8.33947 -6.74507 -5.69718 -3.11826 2.75726 3.16794 3.43407 3.49190 3.52430 3.63597 4.39182 4.53378 4.57834 4.65863 4.70069 4.86856 4.97493 5.05870 5.19375 5.36943 5.38627 5.47395 5.48514 5.52872 5.62305 5.66109 5.69287 5.75169 5.81802 5.94254 6.12556 6.16816 6.24936 6.56514 6.68407 6.81128 6.88773 6.99220 7.43629 7.60597 7.72763 7.88267 8.37220 8.44908 9.28538 9.90800 10.37131 11.36842 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.004219 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.393572 B = 6634.274977 C = 7136.297271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.601 5.601 3 C -0.250 4.250 4 H 0.072 0.928 5 C -0.002 4.002 6 N -0.913 5.913 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.091 3.909 13 N -0.612 5.612 14 C 0.065 3.935 15 C 0.514 3.486 16 O -0.530 6.530 17 C -0.142 4.142 18 H 0.101 0.899 19 C -0.104 4.104 20 C -0.155 4.155 21 C 0.056 3.944 22 O -0.378 6.378 23 C 0.064 3.936 24 H 0.015 0.985 25 H 0.067 0.933 26 H -0.010 1.010 27 H 0.252 0.748 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 -18.768 -4.580 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.379 4.379 4 H 0.090 0.910 5 C -0.199 4.199 6 N -0.559 5.559 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.033 4.033 13 N -0.346 5.346 14 C -0.078 4.078 15 C 0.300 3.700 16 O -0.406 6.406 17 C -0.164 4.164 18 H 0.119 0.881 19 C -0.141 4.141 20 C -0.193 4.193 21 C -0.020 4.020 22 O -0.297 6.297 23 C -0.013 4.013 24 H 0.033 0.967 25 H 0.086 0.914 26 H 0.009 0.991 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.865 -18.216 -4.511 20.754 hybrid contribution 0.312 1.154 -0.288 1.230 sum 9.177 -17.061 -4.799 19.958 Atomic orbital electron populations 1.20877 0.82342 0.97572 0.97589 1.43895 1.01985 1.00542 1.85963 1.19328 0.96271 0.84829 1.37492 0.91031 1.24939 0.97604 0.98383 0.99014 1.70098 1.16766 1.26548 1.42491 0.86212 0.78895 0.83843 0.77429 1.21495 1.21768 1.20422 1.20960 0.96275 0.88494 0.92798 1.22525 0.95444 0.83544 1.01790 1.47975 1.05616 1.07872 1.73118 1.22068 0.97909 0.85867 1.01962 1.20364 0.82253 0.90579 0.76792 1.90731 1.67559 1.33494 1.48791 1.21984 0.97463 0.96192 1.00743 0.88141 1.21413 0.91946 0.97041 1.03742 1.22219 1.00979 0.97651 0.98441 1.22642 0.81856 1.01472 0.96080 1.87949 1.17724 1.30857 1.93128 1.22770 0.97101 0.87206 0.94181 0.96696 0.91423 0.99124 0.93810 0.93433 0.94746 0.91453 0.89820 0.92711 0.90314 0.90805 0.90832 0.90611 0.90509 0.91036 0.92906 0.88788 0.92203 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 9.02 59.85 0.54 4.56 16 2 N -0.60 -15.62 2.93 -181.12 -0.53 -16.15 16 3 C -0.25 -7.17 9.70 -15.06 -0.15 -7.31 16 4 H 0.07 2.08 7.86 -52.49 -0.41 1.66 16 5 C 0.00 -0.07 5.08 -17.43 -0.09 -0.15 16 6 N -0.91 -27.16 10.51 55.49 0.58 -26.58 16 7 Si 0.91 22.69 29.57 -169.99 -5.03 17.67 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.14 3.07 6.01 -4.04 -0.02 3.05 16 12 C 0.09 1.69 5.79 -4.04 -0.02 1.67 16 13 N -0.61 -9.09 2.87 -181.57 -0.52 -9.61 16 14 C 0.07 0.67 9.93 59.85 0.59 1.26 16 15 C 0.51 8.05 6.97 -10.99 -0.08 7.98 16 16 O -0.53 -10.71 15.48 5.55 0.09 -10.62 16 17 C -0.14 -1.64 1.88 -91.64 -0.17 -1.81 16 18 H 0.10 1.00 7.68 -51.93 -0.40 0.60 16 19 C -0.10 -1.15 4.68 -26.55 -0.12 -1.28 16 20 C -0.16 -1.30 6.14 -26.59 -0.16 -1.46 16 21 C 0.06 0.48 6.84 37.20 0.25 0.74 16 22 O -0.38 -4.06 10.77 -35.23 -0.38 -4.44 16 23 C 0.06 0.69 5.75 37.20 0.21 0.91 16 24 H 0.01 0.39 7.92 -51.93 -0.41 -0.02 16 25 H 0.07 1.84 6.41 -51.93 -0.33 1.51 16 26 H -0.01 -0.21 8.10 -51.93 -0.42 -0.63 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 29 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.07 1.17 8.07 -51.93 -0.42 0.76 16 31 H 0.08 1.81 7.36 -51.93 -0.38 1.43 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.66 3.95 -51.93 -0.21 0.45 16 34 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 1.03 5.39 -51.93 -0.28 0.75 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -33.24 331.48 -7.04 -40.28 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -7.03 Total: -3.69 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 0.78 Total: 8.14 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.47 Total: -52.33 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.29 Total: -15.06 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.24 -7.04 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268232135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.267 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds