Wall clock time and date at job start Mon Mar 30 2020 01:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00171 * 2 1 4 4 H 1.07996 * 120.00330 * 199.26221 * 3 2 1 5 5 C 1.38819 * 119.99955 * 19.27202 * 3 2 1 6 6 N 1.31623 * 119.99666 * 12.66086 * 5 3 2 7 7 Si 1.86791 * 119.99960 * 192.66661 * 5 3 2 8 8 H 1.48503 * 109.47301 * 89.99634 * 7 5 3 9 9 H 1.48502 * 109.47230 * 209.99770 * 7 5 3 10 10 H 1.48502 * 109.47432 * 329.99656 * 7 5 3 11 11 C 1.46502 * 119.99898 * 180.28007 * 2 1 3 12 12 C 1.52996 * 109.47095 * 89.99974 * 11 2 1 13 13 N 1.46502 * 109.47095 * 180.02562 * 12 11 2 14 14 C 1.46498 * 120.00248 * 89.99602 * 13 12 11 15 15 C 1.34773 * 120.00163 * 270.00324 * 13 12 11 16 16 O 1.21288 * 120.00029 * 355.03419 * 15 13 12 17 17 C 1.50698 * 120.00344 * 175.04309 * 15 13 12 18 18 H 1.09006 * 109.52412 * 53.41566 * 17 15 13 19 19 C 1.53175 * 109.52554 * 173.60546 * 17 15 13 20 20 C 1.53178 * 109.03842 * 176.88484 * 19 17 15 21 21 C 1.53087 * 109.16409 * 303.01673 * 20 19 17 22 22 O 1.42908 * 109.41056 * 57.60806 * 21 20 19 23 23 C 1.42902 * 114.09859 * 298.83963 * 22 21 20 24 24 H 1.09004 * 109.47242 * 266.00881 * 1 2 3 25 25 H 1.09004 * 109.46754 * 26.00690 * 1 2 3 26 26 H 1.08994 * 109.47058 * 146.00807 * 1 2 3 27 27 H 0.96998 * 119.99250 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46788 * 209.99586 * 11 2 1 29 29 H 1.08999 * 109.47035 * 329.99544 * 11 2 1 30 30 H 1.08998 * 109.47335 * 299.99513 * 12 11 2 31 31 H 1.08998 * 109.47040 * 60.00060 * 12 11 2 32 32 H 1.09001 * 109.47023 * 84.34963 * 14 13 12 33 33 H 1.08998 * 109.47383 * 204.35195 * 14 13 12 34 34 H 1.09006 * 109.46954 * 324.35608 * 14 13 12 35 35 H 1.09001 * 109.54607 * 296.75242 * 19 17 15 36 36 H 1.09000 * 109.54815 * 57.01630 * 19 17 15 37 37 H 1.09005 * 109.51985 * 183.10982 * 20 19 17 38 38 H 1.08997 * 109.57406 * 62.95925 * 20 19 17 39 39 H 1.09000 * 109.48146 * 297.62805 * 21 20 19 40 40 H 1.08997 * 109.47955 * 177.58805 * 21 20 19 41 41 H 1.09000 * 109.47970 * 301.17737 * 23 22 21 42 42 H 1.09000 * 109.48728 * 181.15010 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1843 1.2121 -0.3085 5 6 1.5140 2.3544 0.3968 6 7 0.3478 2.2955 1.0043 7 14 2.3134 4.0104 0.0685 8 1 1.8765 4.5169 -1.2574 9 1 1.9089 4.9734 1.1240 10 1 3.7906 3.8575 0.0777 11 6 2.1975 -1.2687 -0.0062 12 6 2.4524 -1.7034 -1.4508 13 7 3.1844 -2.9724 -1.4570 14 6 2.4514 -4.2408 -1.4633 15 6 4.5321 -2.9730 -1.4568 16 8 5.1391 -1.9264 -1.5424 17 6 5.2851 -4.2741 -1.3504 18 1 4.9368 -4.9607 -2.1220 19 6 6.7836 -4.0147 -1.5327 20 6 7.5449 -5.3307 -1.3452 21 6 7.2189 -5.9077 0.0348 22 8 5.8069 -6.0957 0.1494 23 6 5.0463 -4.8919 0.0298 24 1 -0.3634 -0.0715 1.0252 25 1 -0.3633 0.9237 -0.4506 26 1 -0.3633 -0.8520 -0.5745 27 1 -0.0965 3.1120 1.2812 28 1 3.1499 -1.1409 0.5082 29 1 1.6084 -2.0308 0.5040 30 1 1.5001 -1.8312 -1.9653 31 1 3.0415 -0.9412 -1.9609 32 1 2.1821 -4.4997 -2.4873 33 1 3.0801 -5.0259 -1.0434 34 1 1.5464 -4.1405 -0.8640 35 1 6.9674 -3.6268 -2.5346 36 1 7.1210 -3.2896 -0.7921 37 1 8.6166 -5.1451 -1.4186 38 1 7.2444 -6.0395 -2.1168 39 1 7.5575 -5.2168 0.8069 40 1 7.7243 -6.8656 0.1568 41 1 5.3565 -4.1878 0.8019 42 1 3.9866 -5.1180 0.1485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268232135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:36 Heat of formation + Delta-G solvation = -75.725826 kcal Electronic energy + Delta-G solvation = -21690.324904 eV Core-core repulsion = 18477.600117 eV Total energy + Delta-G solvation = -3212.724787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57177 -39.62548 -37.87443 -36.50021 -34.66788 -33.60660 -32.45189 -30.05612 -27.96332 -27.66404 -26.27437 -25.70916 -24.43431 -22.49374 -21.46872 -20.08170 -18.81882 -18.13200 -17.59498 -17.35401 -17.10692 -16.54162 -16.26189 -15.66760 -15.51753 -15.14779 -15.04758 -14.61708 -14.31741 -14.22508 -13.90591 -13.81443 -13.48140 -13.12371 -12.90578 -12.86074 -12.81521 -12.58594 -12.39762 -12.15919 -12.08737 -11.98013 -11.83391 -11.65118 -11.36720 -10.89973 -10.67049 -10.49409 -9.78988 -8.80933 -7.89091 -5.33511 1.42600 1.43412 1.52599 1.54258 1.98302 2.48703 2.84719 3.24828 3.44015 3.65144 3.74081 3.77052 3.95434 4.06079 4.15123 4.19793 4.25804 4.40796 4.45188 4.58200 4.59698 4.68095 4.72840 4.78835 4.84428 4.90143 4.95238 4.97501 5.04881 5.10731 5.13873 5.30712 5.36811 5.52015 5.58999 5.71193 6.11383 6.29072 6.41949 7.11430 7.15385 7.82606 8.22226 9.15083 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.004219 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.393572 B = 6634.274977 C = 7136.297271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.619 5.619 3 C -0.263 4.263 4 H 0.057 0.943 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.282 1.282 9 H -0.288 1.288 10 H -0.278 1.278 11 C 0.148 3.852 12 C 0.110 3.890 13 N -0.610 5.610 14 C 0.059 3.941 15 C 0.507 3.493 16 O -0.586 6.586 17 C -0.130 4.130 18 H 0.127 0.873 19 C -0.106 4.106 20 C -0.146 4.146 21 C 0.049 3.951 22 O -0.383 6.383 23 C 0.069 3.931 24 H -0.006 1.006 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.251 0.749 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.119 0.881 41 H 0.042 0.958 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 -21.190 -5.275 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.343 5.343 3 C -0.393 4.393 4 H 0.075 0.925 5 C -0.245 4.245 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.208 1.208 9 H -0.214 1.214 10 H -0.203 1.203 11 C 0.021 3.979 12 C -0.016 4.016 13 N -0.343 5.343 14 C -0.082 4.082 15 C 0.296 3.704 16 O -0.466 6.466 17 C -0.152 4.152 18 H 0.145 0.855 19 C -0.144 4.144 20 C -0.183 4.183 21 C -0.027 4.027 22 O -0.301 6.301 23 C -0.008 4.008 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.060 0.940 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.997 -20.710 -5.214 23.174 hybrid contribution 0.300 1.830 -0.065 1.855 sum 9.297 -18.880 -5.279 21.697 Atomic orbital electron populations 1.20658 0.81838 0.97859 0.96702 1.44108 1.02572 1.01276 1.86342 1.19445 0.96013 0.86483 1.37364 0.92468 1.25640 0.98322 1.01380 0.99112 1.70236 1.17775 1.27125 1.43249 0.85269 0.77963 0.79877 0.77370 1.20814 1.21399 1.20313 1.21020 0.94836 0.87415 0.94626 1.21953 0.95870 0.84663 0.99100 1.48027 1.05630 1.08255 1.72354 1.22392 0.98193 0.83816 1.03831 1.21173 0.82460 0.91408 0.75391 1.90707 1.68753 1.35836 1.51278 1.21975 0.96978 0.94060 1.02160 0.85491 1.21426 0.92278 0.98248 1.02495 1.22181 1.01479 0.95949 0.98697 1.22861 0.81003 1.02817 0.96040 1.87949 1.18743 1.30374 1.93081 1.22719 0.98099 0.87067 0.92922 0.98735 0.94170 0.95024 0.94015 0.96141 0.92232 0.89633 0.93654 0.90577 0.88094 0.89839 0.91655 0.93035 0.88980 0.89722 0.93322 0.86285 0.93955 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.67 9.02 127.77 1.15 9.82 16 2 N -0.62 -32.52 2.93 -726.93 -2.13 -34.65 16 3 C -0.26 -15.46 9.70 84.03 0.82 -14.64 16 4 H 0.06 3.45 7.86 -2.91 -0.02 3.43 16 5 C -0.05 -2.91 5.08 84.86 0.43 -2.48 16 6 N -0.94 -56.53 10.51 21.65 0.23 -56.31 16 7 Si 0.97 47.40 29.57 68.60 2.03 49.43 16 8 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 C 0.15 6.36 6.01 86.38 0.52 6.88 16 12 C 0.11 4.02 5.79 86.38 0.50 4.52 16 13 N -0.61 -17.30 2.87 -846.76 -2.43 -19.74 16 14 C 0.06 0.99 9.93 127.77 1.27 2.26 16 15 C 0.51 15.80 6.97 87.66 0.61 16.42 16 16 O -0.59 -24.73 15.48 -3.05 -0.05 -24.77 16 17 C -0.13 -2.80 1.88 -11.45 -0.02 -2.82 16 18 H 0.13 2.09 7.68 -2.38 -0.02 2.07 16 19 C -0.11 -2.31 4.68 30.71 0.14 -2.16 16 20 C -0.15 -2.09 6.14 30.68 0.19 -1.90 16 21 C 0.05 0.72 6.84 72.01 0.49 1.22 16 22 O -0.38 -7.17 10.77 -148.98 -1.60 -8.77 16 23 C 0.07 1.35 5.75 72.01 0.41 1.77 16 24 H -0.01 -0.30 7.92 -2.39 -0.02 -0.32 16 25 H 0.04 2.20 6.41 -2.38 -0.02 2.18 16 26 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 27 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.02 0.97 8.04 -2.38 -0.02 0.95 16 29 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 30 H 0.09 2.82 8.07 -2.39 -0.02 2.81 16 31 H 0.04 2.02 7.36 -2.39 -0.02 2.00 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.28 3.95 -2.39 -0.01 1.27 16 34 H 0.08 1.31 8.11 -2.38 -0.02 1.29 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.35 7.94 -2.39 -0.02 1.33 16 37 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 1.98 5.39 -2.39 -0.01 1.96 16 Total: -1.00 -74.38 331.48 3.54 -70.84 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.98 Total: 5.09 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.52 Total: 18.87 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.34 Total: -110.69 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.65 Total: -33.55 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -74.38 3.54 -70.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268232135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.885 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds