Wall clock time and date at job start Mon Mar 30 2020 00:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47482 * 2 1 4 4 C 1.46501 * 120.00103 * 264.68521 * 3 2 1 5 5 C 1.52998 * 109.47376 * 269.99472 * 4 3 2 6 6 N 1.46501 * 109.47376 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99823 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99614 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00311 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99842 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47519 * 89.99738 * 11 9 7 13 13 H 1.48502 * 109.47109 * 209.99760 * 11 9 7 14 14 H 1.48501 * 109.47007 * 329.99549 * 11 9 7 15 15 C 1.34773 * 120.00173 * 84.68038 * 3 2 1 16 16 O 1.21277 * 120.00654 * 185.00357 * 15 3 2 17 17 C 1.50702 * 119.99782 * 5.00348 * 15 3 2 18 18 H 1.09002 * 109.48323 * 315.23309 * 17 15 3 19 19 C 1.53091 * 109.47882 * 75.25531 * 17 15 3 20 20 C 1.53184 * 109.16253 * 177.59245 * 19 17 15 21 21 C 1.53185 * 109.03594 * 303.01825 * 20 19 17 22 22 C 1.53096 * 109.15857 * 56.98212 * 21 20 19 23 23 O 1.42901 * 109.48216 * 195.20142 * 17 15 3 24 24 H 1.08997 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46499 * 299.99648 * 1 2 3 26 26 H 1.09001 * 109.47388 * 59.99617 * 1 2 3 27 27 H 1.09003 * 109.46772 * 240.00632 * 2 1 3 28 28 H 1.09001 * 109.47388 * 120.00383 * 2 1 3 29 29 H 1.09002 * 109.47334 * 29.99752 * 4 3 2 30 30 H 1.09008 * 109.47204 * 149.99392 * 4 3 2 31 31 H 1.09002 * 109.47118 * 300.00412 * 5 4 3 32 32 H 1.09004 * 109.46538 * 59.99849 * 5 4 3 33 33 H 0.97002 * 119.99918 * 0.02562 * 6 5 4 34 34 H 0.96995 * 119.99823 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.52268 * 57.68830 * 19 17 15 36 36 H 1.08992 * 109.52291 * 297.49781 * 19 17 15 37 37 H 1.08998 * 109.54252 * 62.88216 * 20 19 17 38 38 H 1.08995 * 109.54330 * 183.15741 * 20 19 17 39 39 H 1.08994 * 109.52061 * 176.88402 * 21 20 19 40 40 H 1.08994 * 109.52120 * 297.07748 * 21 20 19 41 41 H 1.09003 * 109.47635 * 182.41138 * 22 21 20 42 42 H 1.08998 * 109.48384 * 62.37150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3734 2.0326 -1.2633 5 6 3.8511 1.7807 -1.5694 6 7 4.2063 2.4326 -2.8324 7 6 5.4854 2.3431 -3.3131 8 1 6.2322 1.7916 -2.7614 9 6 5.8220 2.9613 -4.5094 10 7 4.9117 3.6330 -5.1821 11 14 7.5667 2.8386 -5.1655 12 1 7.6847 1.6424 -6.0376 13 1 7.8869 4.0574 -5.9512 14 1 8.5154 2.7186 -4.0295 15 6 2.1410 2.0526 1.1621 16 8 2.4581 3.2231 1.1557 17 6 1.8843 1.3487 2.4697 18 1 0.9762 0.7512 2.3888 19 6 3.0683 0.4358 2.7992 20 6 2.8273 -0.2297 4.1577 21 6 2.6190 0.8574 5.2167 22 6 1.4523 1.7539 4.7937 23 8 1.7270 2.3166 3.5091 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.7610 1.6243 -2.0673 30 1 2.1971 3.1052 -1.1811 31 1 4.4635 2.1889 -0.7654 32 1 4.0273 0.7081 -1.6515 33 1 3.5354 2.9277 -3.3281 34 1 5.1469 4.0647 -6.0183 35 1 3.9833 1.0266 2.8402 36 1 3.1625 -0.3304 2.0298 37 1 1.9396 -0.8598 4.1026 38 1 3.6917 -0.8375 4.4244 39 1 2.3920 0.3926 6.1760 40 1 3.5250 1.4567 5.3065 41 1 1.3269 2.5551 5.5222 42 1 0.5385 1.1619 4.7433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268444442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:43 Heat of formation + Delta-G solvation = -73.850199 kcal Electronic energy + Delta-G solvation = -21550.923045 eV Core-core repulsion = 18338.279591 eV Total energy + Delta-G solvation = -3212.643454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51622 -38.63753 -36.15328 -34.64376 -33.85237 -32.13607 -31.27493 -30.30032 -27.79050 -25.71285 -24.28598 -23.67769 -23.11879 -21.51425 -20.58701 -19.16735 -17.42283 -17.08225 -16.70233 -16.01962 -15.57442 -15.18181 -14.69669 -14.48712 -14.43060 -14.05638 -13.72407 -13.46471 -13.28810 -13.06017 -12.91798 -12.89430 -12.39980 -12.14777 -11.72445 -11.49258 -11.34241 -11.27840 -11.11453 -10.95336 -10.85888 -10.64642 -10.63698 -10.08590 -9.75498 -9.71975 -9.41747 -8.84537 -8.50267 -6.90353 -5.73248 -3.02503 2.69597 2.78767 3.46302 3.51283 3.53604 3.78906 4.32537 4.50061 4.53011 4.63987 4.68535 4.72156 4.81042 4.84323 5.06349 5.10107 5.20891 5.31324 5.40379 5.48360 5.53581 5.56006 5.62222 5.64341 5.67915 5.73376 5.80197 5.84578 5.98771 6.04355 6.08175 6.17632 6.57282 6.74807 6.90248 6.98446 7.51988 7.72923 8.33401 8.45369 9.56134 10.12439 10.47576 11.49717 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.003907 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.212815 B = 7164.302107 C = 7524.687828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.605 5.605 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.519 3.481 16 O -0.511 6.511 17 C 0.076 3.924 18 H 0.080 0.920 19 C -0.150 4.150 20 C -0.119 4.119 21 C -0.159 4.159 22 C 0.059 3.941 23 O -0.355 6.355 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 -11.790 19.508 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.028 4.028 3 N -0.341 5.341 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.305 3.695 16 O -0.385 6.385 17 C 0.015 3.985 18 H 0.097 0.903 19 C -0.187 4.187 20 C -0.157 4.157 21 C -0.197 4.197 22 C -0.017 4.017 23 O -0.273 6.273 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.373 -10.969 19.460 24.629 hybrid contribution 0.707 -0.292 -0.533 0.933 sum -9.666 -11.261 18.926 24.051 Atomic orbital electron populations 1.22261 0.95895 1.02257 1.02735 1.21746 0.94391 0.82820 1.03799 1.47833 1.65560 1.14127 1.06543 1.21720 0.97223 0.99223 0.83213 1.20913 0.91989 0.95726 0.89926 1.42212 1.10578 1.63002 1.21715 1.19205 0.87384 1.27296 1.03042 0.91210 1.24747 0.97885 1.00498 0.97836 1.69664 1.32656 1.38944 1.16933 0.86163 0.84238 0.76990 0.78650 1.21720 1.21710 1.20748 1.20084 0.77859 0.87023 0.84575 1.90746 1.45275 1.15731 1.86740 1.21962 0.98838 0.90281 0.87447 0.90251 1.22206 0.98927 0.99283 0.98326 1.21585 1.02367 0.97585 0.94158 1.22226 1.00366 0.98079 0.99017 1.22648 0.96217 0.97846 0.85034 1.88077 1.91952 1.31166 1.16082 0.91374 0.92679 0.91755 0.89329 0.90466 0.90354 0.89577 0.96055 0.96416 0.78235 0.93486 0.90044 0.89811 0.91600 0.90886 0.90736 0.90704 0.88442 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.05 37.16 0.37 -1.10 16 2 C 0.10 0.97 5.73 -4.05 -0.02 0.94 16 3 N -0.61 -8.84 2.48 -173.69 -0.43 -9.27 16 4 C 0.11 1.92 5.53 -4.04 -0.02 1.90 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.06 16 6 N -0.73 -19.41 5.60 -59.91 -0.34 -19.75 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 11 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.52 8.50 6.93 -10.99 -0.08 8.42 16 16 O -0.51 -10.99 16.12 -13.87 -0.22 -11.21 16 17 C 0.08 0.94 2.22 -27.83 -0.06 0.87 16 18 H 0.08 0.78 6.03 -51.93 -0.31 0.46 16 19 C -0.15 -1.53 5.15 -26.59 -0.14 -1.67 16 20 C -0.12 -0.90 6.03 -26.54 -0.16 -1.06 16 21 C -0.16 -1.22 6.14 -26.59 -0.16 -1.39 16 22 C 0.06 0.54 6.84 37.21 0.25 0.79 16 23 O -0.35 -4.90 9.98 -54.66 -0.55 -5.45 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.47 6.92 -51.92 -0.36 0.11 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 28 H 0.08 0.63 4.73 -51.93 -0.25 0.38 16 29 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.09 1.72 7.36 -51.92 -0.38 1.34 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.75 6.07 -51.93 -0.32 0.43 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -35.46 335.41 -8.03 -43.49 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.96 Total: 4.20 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.29 Total: 3.20 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.04 Total: -57.20 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.77 Total: -16.66 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.46 -8.03 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268444442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.356 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds