Wall clock time and date at job start Mon Mar 30 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47482 * 2 1 4 4 C 1.46501 * 120.00103 * 264.68521 * 3 2 1 5 5 C 1.52998 * 109.47376 * 269.99472 * 4 3 2 6 6 N 1.46501 * 109.47376 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99823 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99614 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00311 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99842 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47519 * 89.99738 * 11 9 7 13 13 H 1.48502 * 109.47109 * 209.99760 * 11 9 7 14 14 H 1.48501 * 109.47007 * 329.99549 * 11 9 7 15 15 C 1.34773 * 120.00173 * 84.68038 * 3 2 1 16 16 O 1.21277 * 120.00654 * 185.00357 * 15 3 2 17 17 C 1.50702 * 119.99782 * 5.00348 * 15 3 2 18 18 H 1.09002 * 109.48323 * 315.23309 * 17 15 3 19 19 C 1.53091 * 109.47882 * 75.25531 * 17 15 3 20 20 C 1.53184 * 109.16253 * 177.59245 * 19 17 15 21 21 C 1.53185 * 109.03594 * 303.01825 * 20 19 17 22 22 C 1.53096 * 109.15857 * 56.98212 * 21 20 19 23 23 O 1.42901 * 109.48216 * 195.20142 * 17 15 3 24 24 H 1.08997 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46499 * 299.99648 * 1 2 3 26 26 H 1.09001 * 109.47388 * 59.99617 * 1 2 3 27 27 H 1.09003 * 109.46772 * 240.00632 * 2 1 3 28 28 H 1.09001 * 109.47388 * 120.00383 * 2 1 3 29 29 H 1.09002 * 109.47334 * 29.99752 * 4 3 2 30 30 H 1.09008 * 109.47204 * 149.99392 * 4 3 2 31 31 H 1.09002 * 109.47118 * 300.00412 * 5 4 3 32 32 H 1.09004 * 109.46538 * 59.99849 * 5 4 3 33 33 H 0.97002 * 119.99918 * 0.02562 * 6 5 4 34 34 H 0.96995 * 119.99823 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.52268 * 57.68830 * 19 17 15 36 36 H 1.08992 * 109.52291 * 297.49781 * 19 17 15 37 37 H 1.08998 * 109.54252 * 62.88216 * 20 19 17 38 38 H 1.08995 * 109.54330 * 183.15741 * 20 19 17 39 39 H 1.08994 * 109.52061 * 176.88402 * 21 20 19 40 40 H 1.08994 * 109.52120 * 297.07748 * 21 20 19 41 41 H 1.09003 * 109.47635 * 182.41138 * 22 21 20 42 42 H 1.08998 * 109.48384 * 62.37150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3734 2.0326 -1.2633 5 6 3.8511 1.7807 -1.5694 6 7 4.2063 2.4326 -2.8324 7 6 5.4854 2.3431 -3.3131 8 1 6.2322 1.7916 -2.7614 9 6 5.8220 2.9613 -4.5094 10 7 4.9117 3.6330 -5.1821 11 14 7.5667 2.8386 -5.1655 12 1 7.6847 1.6424 -6.0376 13 1 7.8869 4.0574 -5.9512 14 1 8.5154 2.7186 -4.0295 15 6 2.1410 2.0526 1.1621 16 8 2.4581 3.2231 1.1557 17 6 1.8843 1.3487 2.4697 18 1 0.9762 0.7512 2.3888 19 6 3.0683 0.4358 2.7992 20 6 2.8273 -0.2297 4.1577 21 6 2.6190 0.8574 5.2167 22 6 1.4523 1.7539 4.7937 23 8 1.7270 2.3166 3.5091 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.7610 1.6243 -2.0673 30 1 2.1971 3.1052 -1.1811 31 1 4.4635 2.1889 -0.7654 32 1 4.0273 0.7081 -1.6515 33 1 3.5354 2.9277 -3.3281 34 1 5.1469 4.0647 -6.0183 35 1 3.9833 1.0266 2.8402 36 1 3.1625 -0.3304 2.0298 37 1 1.9396 -0.8598 4.1026 38 1 3.6917 -0.8375 4.4244 39 1 2.3920 0.3926 6.1760 40 1 3.5250 1.4567 5.3065 41 1 1.3269 2.5551 5.5222 42 1 0.5385 1.1619 4.7433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268444442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:42 Heat of formation + Delta-G solvation = -98.170868 kcal Electronic energy + Delta-G solvation = -21551.977668 eV Core-core repulsion = 18338.279591 eV Total energy + Delta-G solvation = -3213.698077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60945 -39.64507 -37.55713 -36.45293 -34.63984 -33.77268 -32.39807 -31.57398 -29.32699 -26.86961 -25.40941 -25.03732 -24.11439 -23.22562 -21.29300 -20.40164 -19.22618 -18.36149 -17.85828 -16.99671 -16.83501 -16.35857 -16.22709 -15.59498 -15.47404 -15.21238 -15.12212 -14.97164 -14.73411 -14.35458 -14.06235 -13.65385 -13.42863 -13.11133 -12.96465 -12.86278 -12.76098 -12.55264 -12.32270 -12.18917 -12.14841 -11.97706 -11.89871 -11.85927 -11.33983 -10.99604 -10.73304 -10.48080 -9.78851 -9.08959 -7.99241 -5.30561 1.44721 1.46768 1.48404 1.56674 1.66340 2.53837 2.90136 3.33837 3.39610 3.71733 3.82686 3.95128 3.98468 4.02627 4.05925 4.10323 4.18047 4.20382 4.39748 4.41497 4.52780 4.55755 4.64485 4.78263 4.83923 4.84975 4.91505 5.01837 5.04454 5.06754 5.09850 5.16860 5.34975 5.37253 5.41603 5.51793 6.09548 6.22071 6.38163 7.09344 7.28107 7.99190 8.24872 9.24233 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.003907 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.212815 B = 7164.302107 C = 7524.687828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.599 5.599 4 C 0.122 3.878 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.253 4.253 8 H 0.074 0.926 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.279 1.279 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.508 3.492 16 O -0.578 6.578 17 C 0.084 3.916 18 H 0.114 0.886 19 C -0.148 4.148 20 C -0.114 4.114 21 C -0.158 4.158 22 C 0.051 3.949 23 O -0.396 6.396 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.055 0.945 31 H -0.004 1.004 32 H 0.036 0.964 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 -14.823 20.790 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.333 5.333 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.197 1.197 15 C 0.296 3.704 16 O -0.456 6.456 17 C 0.023 3.977 18 H 0.131 0.869 19 C -0.186 4.186 20 C -0.151 4.151 21 C -0.196 4.196 22 C -0.025 4.025 23 O -0.316 6.316 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.054 0.946 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.910 -14.078 20.779 27.367 hybrid contribution 0.830 0.640 -0.870 1.362 sum -10.080 -13.438 19.909 26.049 Atomic orbital electron populations 1.22231 0.94225 1.04059 1.02126 1.22146 0.95737 0.80033 1.05500 1.47934 1.64662 1.15773 1.04927 1.21345 0.95127 0.98115 0.85566 1.20947 0.93981 0.95749 0.87061 1.42402 1.09857 1.63355 1.23078 1.19597 0.88481 1.27069 1.03283 0.90828 1.25641 1.02171 1.00445 0.98235 1.69824 1.34750 1.39985 1.17259 0.85068 0.79247 0.76928 0.78050 1.20599 1.21958 1.19703 1.21065 0.76410 0.86513 0.86367 1.90706 1.48402 1.18756 1.87775 1.21998 1.01005 0.89778 0.84920 0.86885 1.22231 0.96592 0.98882 1.00892 1.21617 1.04152 0.97495 0.91873 1.22232 0.98952 0.97852 1.00520 1.22942 0.97774 0.98694 0.83100 1.88030 1.92415 1.33115 1.17995 0.88272 0.92602 0.93140 0.88698 0.87729 0.88327 0.92642 0.98617 0.94616 0.79262 0.93745 0.93207 0.88245 0.88900 0.89677 0.87945 0.92711 0.87960 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.05 71.98 0.72 -1.61 16 2 C 0.09 1.52 5.73 86.38 0.50 2.01 16 3 N -0.60 -17.28 2.48 -821.82 -2.04 -19.32 16 4 C 0.12 4.44 5.53 86.38 0.48 4.91 16 5 C 0.15 6.61 6.58 86.38 0.57 7.18 16 6 N -0.74 -40.48 5.60 -343.45 -1.92 -42.40 16 7 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 10 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 11 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 C 0.51 16.96 6.93 87.66 0.61 17.57 16 16 O -0.58 -26.43 16.12 15.56 0.25 -26.18 16 17 C 0.08 1.96 2.22 29.88 0.07 2.02 16 18 H 0.11 1.83 6.03 -2.39 -0.01 1.82 16 19 C -0.15 -2.78 5.15 30.69 0.16 -2.62 16 20 C -0.11 -1.33 6.03 30.72 0.19 -1.14 16 21 C -0.16 -2.05 6.14 30.69 0.19 -1.86 16 22 C 0.05 0.82 6.84 72.01 0.49 1.31 16 23 O -0.40 -10.86 9.98 -130.40 -1.30 -12.16 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.78 6.92 -2.38 -0.02 0.76 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.59 8.03 -2.39 -0.02 1.58 16 28 H 0.10 1.28 4.73 -2.39 -0.01 1.27 16 29 H 0.10 3.16 8.07 -2.39 -0.02 3.15 16 30 H 0.05 2.36 7.36 -2.38 -0.02 2.35 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.38 21.41 7.67 -92.71 -0.71 20.70 16 34 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.49 6.07 -2.39 -0.01 1.47 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -80.65 335.41 2.85 -77.79 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.29 Total: 23.64 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.27 Total: 9.91 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -3.68 Total: -122.34 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.05 Total: -38.34 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -80.65 2.85 -77.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268444442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.377 kcal (2) G-P(sol) polarization free energy of solvation -80.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds