Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46677 * 2 1 4 4 C 1.46502 * 120.00104 * 276.87959 * 3 2 1 5 5 C 1.53005 * 109.46829 * 270.00131 * 4 3 2 6 6 N 1.46502 * 109.46829 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99991 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.38808 * 119.99806 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00444 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99897 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47388 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47055 * 119.99838 * 11 9 7 14 14 H 1.48498 * 109.47347 * 240.00022 * 11 9 7 15 15 C 1.34777 * 120.00143 * 96.88468 * 3 2 1 16 16 O 1.21285 * 120.00604 * 184.60653 * 15 3 2 17 17 C 1.50702 * 120.00047 * 4.60387 * 15 3 2 18 18 C 1.52999 * 110.56359 * 297.65100 * 17 15 3 19 19 C 1.54510 * 110.51504 * 174.97248 * 17 15 3 20 20 C 1.54482 * 104.06187 * 241.35603 * 19 17 15 21 21 O 1.44421 * 104.80278 * 23.97591 * 20 19 17 22 22 C 1.44427 * 105.27733 * 319.48882 * 21 20 19 23 23 H 1.09004 * 109.47273 * 177.12031 * 1 2 3 24 24 H 1.09005 * 109.47600 * 297.11611 * 1 2 3 25 25 H 1.09001 * 109.47225 * 57.11585 * 1 2 3 26 26 H 1.08993 * 109.47242 * 240.00160 * 2 1 3 27 27 H 1.09002 * 109.46802 * 119.99469 * 2 1 3 28 28 H 1.08994 * 109.46936 * 30.00627 * 4 3 2 29 29 H 1.09005 * 109.47044 * 150.00531 * 4 3 2 30 30 H 1.09002 * 109.47442 * 299.99897 * 5 4 3 31 31 H 1.08998 * 109.46927 * 59.99956 * 5 4 3 32 32 H 0.97008 * 119.99724 * 0.02562 * 6 5 4 33 33 H 0.96998 * 120.00630 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47389 * 306.95485 * 18 17 15 35 35 H 1.09002 * 109.46986 * 66.95596 * 18 17 15 36 36 H 1.09004 * 109.47123 * 186.94768 * 18 17 15 37 37 H 1.08998 * 110.50937 * 0.02562 * 19 17 15 38 38 H 1.08997 * 110.51086 * 122.71285 * 19 17 15 39 39 H 1.09003 * 110.37049 * 142.80718 * 20 19 17 40 40 H 1.08998 * 110.36988 * 265.03589 * 20 19 17 41 41 H 1.08996 * 110.37120 * 281.68170 * 22 21 20 42 42 H 1.09002 * 110.37190 * 159.34605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1190 2.1225 -1.2596 5 6 3.5044 1.9033 -1.8708 6 7 3.6051 2.6441 -3.1307 7 6 4.7620 2.5976 -3.8618 8 1 5.6005 2.0152 -3.5094 9 6 4.8575 3.3000 -5.0553 10 7 3.8359 4.0102 -5.4846 11 14 6.4360 3.2372 -6.0522 12 1 7.4264 2.3759 -5.3575 13 1 6.1498 2.6773 -7.3975 14 1 6.9869 4.6089 -6.1938 15 6 2.3747 1.9700 1.1588 16 8 2.6992 3.1386 1.1707 17 6 2.3701 1.1763 2.4399 18 6 0.9567 0.6891 2.7651 19 6 2.9320 2.0233 3.6036 20 6 4.1797 1.2405 4.0692 21 8 4.5775 0.4624 2.9195 22 6 3.3448 -0.0180 2.3401 23 1 -0.3634 -1.0264 -0.0516 24 1 -0.3634 0.4684 0.9147 25 1 -0.3634 0.5580 -0.8630 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3559 1.7676 -1.9521 29 1 1.9703 3.1854 -1.0686 30 1 4.2676 2.2583 -1.1782 31 1 3.6532 0.8405 -2.0618 32 1 2.8521 3.1675 -3.4471 33 1 3.9028 4.5013 -6.3184 34 1 0.2697 1.5353 2.7566 35 1 0.6433 -0.0409 2.0188 36 1 0.9503 0.2256 3.7517 37 1 3.2127 3.0163 3.2524 38 1 2.2029 2.0949 4.4106 39 1 4.9749 1.9292 4.3549 40 1 3.9275 0.5861 4.9036 41 1 2.9641 -0.8669 2.9081 42 1 3.4986 -0.2962 1.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268487508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -52.905737 kcal Electronic energy + Delta-G solvation = -21982.323927 eV Core-core repulsion = 18770.588693 eV Total energy + Delta-G solvation = -3211.735234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07712 -38.53508 -36.34845 -34.88807 -33.68320 -31.66271 -30.44413 -29.91846 -27.69804 -26.65450 -24.13159 -23.77235 -22.95755 -22.04807 -20.83319 -18.78775 -17.14301 -17.01984 -16.59828 -16.18075 -15.76558 -15.20365 -14.82785 -14.45065 -14.24708 -13.99157 -13.61626 -13.27316 -13.22381 -12.94751 -12.70201 -12.66833 -12.57779 -12.05358 -11.63670 -11.50369 -11.41886 -11.21330 -10.97371 -10.94243 -10.84684 -10.74422 -10.64669 -10.09925 -10.03146 -9.72965 -9.46378 -8.84300 -8.52030 -6.89621 -5.72893 -3.01939 2.68923 3.01653 3.46848 3.52567 3.55040 3.76645 4.12324 4.29684 4.63782 4.65946 4.71213 4.81595 4.93720 4.98437 5.04651 5.19604 5.21880 5.27977 5.36340 5.48264 5.51327 5.55231 5.59590 5.62879 5.69430 5.70125 5.75343 5.84867 6.02883 6.07587 6.11041 6.18236 6.57015 6.60073 6.77942 6.94920 7.51617 7.74803 8.28861 8.45699 9.56687 10.12794 10.48044 11.50181 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.004444 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.859023 B = 6298.641554 C = 6849.649584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 N -0.604 5.604 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.528 3.472 16 O -0.527 6.527 17 C -0.115 4.115 18 C -0.157 4.157 19 C -0.144 4.144 20 C 0.045 3.955 21 O -0.367 6.367 22 C 0.051 3.949 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.018 0.982 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -11.238 19.791 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.035 4.035 3 N -0.337 5.337 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.315 3.685 16 O -0.403 6.403 17 C -0.119 4.119 18 C -0.213 4.213 19 C -0.182 4.182 20 C -0.031 4.031 21 O -0.286 6.286 22 C -0.026 4.026 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.020 -10.688 19.657 23.769 hybrid contribution 0.330 0.175 -0.705 0.798 sum -7.690 -10.513 18.953 22.997 Atomic orbital electron populations 1.22495 0.95800 1.02540 1.03279 1.21944 0.94679 0.83102 1.03749 1.47827 1.64730 1.14104 1.07039 1.21700 0.98912 0.97616 0.83242 1.20904 0.93622 0.95191 0.88831 1.42216 1.16298 1.57902 1.21068 1.19266 0.92168 1.24346 1.00978 0.91132 1.24739 0.97822 1.00103 0.98333 1.69671 1.30042 1.35491 1.23081 0.86094 0.82772 0.77249 0.79967 1.20531 1.21852 1.21819 1.20127 0.76522 0.87348 0.84493 1.90695 1.47256 1.16515 1.85807 1.22120 0.98229 0.96892 0.94652 1.22416 0.93527 1.02393 1.03011 1.23074 0.97408 1.01484 0.96227 1.23439 0.97057 0.93765 0.88883 1.89202 1.27295 1.69289 1.42768 1.23743 0.84153 0.94427 1.00276 0.91361 0.91384 0.91743 0.89823 0.89553 0.90490 0.89677 0.95962 0.96446 0.78289 0.93564 0.91581 0.89536 0.91387 0.88123 0.90027 0.88844 0.92294 0.91088 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.29 37.16 0.35 -1.16 16 2 C 0.09 0.89 4.84 -4.04 -0.02 0.87 16 3 N -0.60 -8.66 2.41 -173.69 -0.42 -9.08 16 4 C 0.11 1.90 5.58 -4.04 -0.02 1.88 16 5 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 6 N -0.73 -19.53 5.60 -59.90 -0.34 -19.86 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 11 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 15 C 0.53 8.18 6.48 -10.98 -0.07 8.11 16 16 O -0.53 -10.51 14.85 5.55 0.08 -10.43 16 17 C -0.12 -1.28 0.68 -154.09 -0.11 -1.39 16 18 C -0.16 -1.21 6.86 37.16 0.25 -0.96 16 19 C -0.14 -1.56 6.31 -25.16 -0.16 -1.72 16 20 C 0.05 0.46 7.63 37.94 0.29 0.75 16 21 O -0.37 -4.93 11.65 -35.23 -0.41 -5.34 16 22 C 0.05 0.54 5.34 37.93 0.20 0.75 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.53 5.52 -51.93 -0.29 0.24 16 25 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 26 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.09 0.70 3.29 -51.93 -0.17 0.53 16 28 H 0.08 1.24 7.95 -51.93 -0.41 0.83 16 29 H 0.08 1.69 7.36 -51.93 -0.38 1.30 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 33 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.09 0.57 3.27 -51.93 -0.17 0.40 16 36 H 0.07 0.40 8.13 -51.93 -0.42 -0.03 16 37 H 0.10 1.38 6.51 -51.93 -0.34 1.04 16 38 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 42 H 0.10 1.13 5.94 -51.93 -0.31 0.82 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -35.26 325.87 -6.56 -41.82 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.53 Total: 5.56 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 0.44 Total: 2.63 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.03 Total: -57.23 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.33 Total: -15.77 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.26 -6.56 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268487508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.089 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds