Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46677 * 2 1 4 4 C 1.46502 * 120.00104 * 276.87959 * 3 2 1 5 5 C 1.53005 * 109.46829 * 270.00131 * 4 3 2 6 6 N 1.46502 * 109.46829 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99991 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.38808 * 119.99806 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00444 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99897 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47388 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47055 * 119.99838 * 11 9 7 14 14 H 1.48498 * 109.47347 * 240.00022 * 11 9 7 15 15 C 1.34777 * 120.00143 * 96.88468 * 3 2 1 16 16 O 1.21285 * 120.00604 * 184.60653 * 15 3 2 17 17 C 1.50702 * 120.00047 * 4.60387 * 15 3 2 18 18 C 1.52999 * 110.56359 * 297.65100 * 17 15 3 19 19 C 1.54510 * 110.51504 * 174.97248 * 17 15 3 20 20 C 1.54482 * 104.06187 * 241.35603 * 19 17 15 21 21 O 1.44421 * 104.80278 * 23.97591 * 20 19 17 22 22 C 1.44427 * 105.27733 * 319.48882 * 21 20 19 23 23 H 1.09004 * 109.47273 * 177.12031 * 1 2 3 24 24 H 1.09005 * 109.47600 * 297.11611 * 1 2 3 25 25 H 1.09001 * 109.47225 * 57.11585 * 1 2 3 26 26 H 1.08993 * 109.47242 * 240.00160 * 2 1 3 27 27 H 1.09002 * 109.46802 * 119.99469 * 2 1 3 28 28 H 1.08994 * 109.46936 * 30.00627 * 4 3 2 29 29 H 1.09005 * 109.47044 * 150.00531 * 4 3 2 30 30 H 1.09002 * 109.47442 * 299.99897 * 5 4 3 31 31 H 1.08998 * 109.46927 * 59.99956 * 5 4 3 32 32 H 0.97008 * 119.99724 * 0.02562 * 6 5 4 33 33 H 0.96998 * 120.00630 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47389 * 306.95485 * 18 17 15 35 35 H 1.09002 * 109.46986 * 66.95596 * 18 17 15 36 36 H 1.09004 * 109.47123 * 186.94768 * 18 17 15 37 37 H 1.08998 * 110.50937 * 0.02562 * 19 17 15 38 38 H 1.08997 * 110.51086 * 122.71285 * 19 17 15 39 39 H 1.09003 * 110.37049 * 142.80718 * 20 19 17 40 40 H 1.08998 * 110.36988 * 265.03589 * 20 19 17 41 41 H 1.08996 * 110.37120 * 281.68170 * 22 21 20 42 42 H 1.09002 * 110.37190 * 159.34605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1190 2.1225 -1.2596 5 6 3.5044 1.9033 -1.8708 6 7 3.6051 2.6441 -3.1307 7 6 4.7620 2.5976 -3.8618 8 1 5.6005 2.0152 -3.5094 9 6 4.8575 3.3000 -5.0553 10 7 3.8359 4.0102 -5.4846 11 14 6.4360 3.2372 -6.0522 12 1 7.4264 2.3759 -5.3575 13 1 6.1498 2.6773 -7.3975 14 1 6.9869 4.6089 -6.1938 15 6 2.3747 1.9700 1.1588 16 8 2.6992 3.1386 1.1707 17 6 2.3701 1.1763 2.4399 18 6 0.9567 0.6891 2.7651 19 6 2.9320 2.0233 3.6036 20 6 4.1797 1.2405 4.0692 21 8 4.5775 0.4624 2.9195 22 6 3.3448 -0.0180 2.3401 23 1 -0.3634 -1.0264 -0.0516 24 1 -0.3634 0.4684 0.9147 25 1 -0.3634 0.5580 -0.8630 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3559 1.7676 -1.9521 29 1 1.9703 3.1854 -1.0686 30 1 4.2676 2.2583 -1.1782 31 1 3.6532 0.8405 -2.0618 32 1 2.8521 3.1675 -3.4471 33 1 3.9028 4.5013 -6.3184 34 1 0.2697 1.5353 2.7566 35 1 0.6433 -0.0409 2.0188 36 1 0.9503 0.2256 3.7517 37 1 3.2127 3.0163 3.2524 38 1 2.2029 2.0949 4.4106 39 1 4.9749 1.9292 4.3549 40 1 3.9275 0.5861 4.9036 41 1 2.9641 -0.8669 2.9081 42 1 3.4986 -0.2962 1.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268487508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -78.816022 kcal Electronic energy + Delta-G solvation = -21983.447481 eV Core-core repulsion = 18770.588693 eV Total energy + Delta-G solvation = -3212.858788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09922 -39.58068 -37.67262 -36.60913 -34.86956 -33.41946 -31.73535 -30.75461 -29.30932 -27.42449 -25.93309 -24.76010 -23.84593 -23.66490 -22.07299 -19.93736 -19.16294 -18.02271 -17.70162 -17.31601 -16.78064 -16.51726 -16.07174 -15.87979 -15.53074 -15.21272 -15.13524 -14.91276 -14.67964 -14.03965 -13.66494 -13.53376 -13.39081 -13.08828 -12.95458 -12.83579 -12.76661 -12.45523 -12.37766 -12.28190 -12.16493 -12.11586 -11.89413 -11.72886 -11.47100 -11.04094 -11.01248 -10.56179 -9.78483 -9.11047 -8.01222 -5.32590 1.43895 1.46253 1.51504 1.56558 1.86950 2.53031 2.95376 3.23292 3.32062 3.43544 3.81963 3.92275 3.98153 4.07910 4.10986 4.16670 4.19352 4.27694 4.39034 4.48171 4.50817 4.52898 4.60652 4.68744 4.78637 4.83846 4.87294 4.90420 4.98302 5.01682 5.05003 5.15581 5.19422 5.40178 5.46059 5.52379 5.78956 6.20215 6.37079 7.09924 7.26372 7.96620 8.23106 9.22368 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.004444 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.859023 B = 6298.641554 C = 6849.649584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 N -0.601 5.601 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.742 5.742 7 C -0.253 4.253 8 H 0.071 0.929 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.292 1.292 15 C 0.516 3.484 16 O -0.586 6.586 17 C -0.110 4.110 18 C -0.151 4.151 19 C -0.146 4.146 20 C 0.044 3.956 21 O -0.404 6.404 22 C 0.048 3.952 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.057 0.943 30 H -0.007 1.007 31 H 0.031 0.969 32 H 0.376 0.624 33 H 0.254 0.746 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -13.925 21.237 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.041 4.041 3 N -0.333 5.333 4 C -0.001 4.001 5 C 0.023 3.977 6 N -0.385 5.385 7 C -0.385 4.385 8 H 0.089 0.911 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.192 1.192 13 H -0.211 1.211 14 H -0.219 1.219 15 C 0.305 3.695 16 O -0.466 6.466 17 C -0.113 4.113 18 C -0.208 4.208 19 C -0.184 4.184 20 C -0.032 4.032 21 O -0.324 6.324 22 C -0.028 4.028 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.011 0.989 31 H 0.049 0.951 32 H 0.208 0.792 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.733 -13.437 21.134 26.523 hybrid contribution 0.552 1.010 -1.114 1.601 sum -8.181 -12.428 20.021 24.944 Atomic orbital electron populations 1.22477 0.93908 1.04281 1.02962 1.22314 0.96195 0.80469 1.05106 1.47939 1.64308 1.15585 1.05457 1.21289 0.96788 0.96854 0.85178 1.20921 0.95347 0.94830 0.86589 1.42386 1.15486 1.58344 1.22328 1.19620 0.92991 1.24328 1.01521 0.91059 1.25623 1.01294 0.99905 0.99502 1.69823 1.32103 1.36327 1.23496 0.85010 0.78848 0.77157 0.78323 1.19246 1.21139 1.21868 1.21137 0.75090 0.87119 0.86119 1.90668 1.49735 1.19305 1.86850 1.22188 1.00825 0.96522 0.91775 1.22454 0.90540 1.02524 1.05270 1.23094 0.98673 0.99548 0.97051 1.23616 0.96551 0.94094 0.88977 1.89160 1.29118 1.69932 1.44152 1.23952 0.83198 0.95145 1.00502 0.88366 0.90612 0.93384 0.89795 0.86955 0.88646 0.92482 0.98869 0.95132 0.79219 0.93693 0.92273 0.88172 0.88132 0.92030 0.86924 0.89332 0.88673 0.86749 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.29 71.98 0.67 -1.74 16 2 C 0.08 1.44 4.84 86.38 0.42 1.86 16 3 N -0.60 -17.22 2.41 -821.81 -1.98 -19.20 16 4 C 0.12 4.50 5.58 86.38 0.48 4.98 16 5 C 0.15 6.83 6.58 86.38 0.57 7.40 16 6 N -0.74 -40.94 5.60 -343.44 -1.92 -42.86 16 7 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 10 N -0.97 -61.06 13.06 21.65 0.28 -60.77 16 11 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 15 C 0.52 16.27 6.48 87.66 0.57 16.83 16 16 O -0.59 -24.92 14.85 -3.04 -0.05 -24.96 16 17 C -0.11 -2.25 0.68 -51.91 -0.04 -2.28 16 18 C -0.15 -1.77 6.86 71.98 0.49 -1.27 16 19 C -0.15 -3.01 6.31 31.61 0.20 -2.81 16 20 C 0.04 0.82 7.63 72.49 0.55 1.38 16 21 O -0.40 -10.37 11.65 -148.98 -1.74 -12.11 16 22 C 0.05 0.91 5.34 72.48 0.39 1.30 16 23 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.08 0.92 5.52 -2.38 -0.01 0.91 16 25 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 26 H 0.08 1.53 8.12 -2.39 -0.02 1.52 16 27 H 0.11 1.44 3.29 -2.39 -0.01 1.43 16 28 H 0.10 3.12 7.95 -2.39 -0.02 3.10 16 29 H 0.06 2.41 7.36 -2.38 -0.02 2.40 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.38 21.58 7.67 -92.70 -0.71 20.87 16 33 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 35 H 0.10 0.88 3.27 -2.39 -0.01 0.87 16 36 H 0.10 0.60 8.13 -2.39 -0.02 0.58 16 37 H 0.06 1.78 6.51 -2.39 -0.02 1.76 16 38 H 0.11 1.56 7.73 -2.39 -0.02 1.54 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.18 7.87 -2.39 -0.02 1.16 16 42 H 0.09 1.85 5.94 -2.39 -0.01 1.84 16 Total: -1.00 -80.34 325.87 2.54 -77.79 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.31 Total: 24.70 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.61 Total: 7.60 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -3.62 Total: -122.84 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.78 Total: -37.07 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -80.34 2.54 -77.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268487508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.021 kcal (2) G-P(sol) polarization free energy of solvation -80.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds