Wall clock time and date at job start Mon Mar 30 2020 01:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.42906 * 114.00088 * 177.61746 * 3 2 1 5 5 H 1.08994 * 109.46967 * 329.51059 * 4 3 2 6 6 C 1.50700 * 109.46656 * 89.50822 * 4 3 2 7 7 O 1.21281 * 120.00609 * 5.00024 * 6 4 3 8 8 N 1.34781 * 119.99896 * 185.00190 * 6 4 3 9 9 C 1.46494 * 120.00186 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47171 * 34.99981 * 9 8 6 11 11 C 1.52997 * 109.47317 * 275.00172 * 9 8 6 12 12 C 1.53002 * 109.47210 * 154.99715 * 9 8 6 13 13 N 1.46500 * 109.47175 * 305.00403 * 12 9 8 14 14 C 1.36943 * 119.99914 * 179.97438 * 13 12 9 15 15 H 1.07996 * 119.99570 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99950 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99940 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99954 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47240 * 89.99720 * 18 16 14 20 20 H 1.48499 * 109.46840 * 209.99784 * 18 16 14 21 21 H 1.48500 * 109.47147 * 329.99467 * 18 16 14 22 22 C 1.52999 * 109.47010 * 209.50622 * 4 3 2 23 23 C 1.52990 * 117.52061 * 356.32153 * 22 4 3 24 24 C 1.52991 * 117.49988 * 64.95341 * 22 4 3 25 25 H 1.08995 * 109.47409 * 300.00669 * 1 2 3 26 26 H 1.09007 * 109.46432 * 60.00339 * 1 2 3 27 27 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47903 * 239.99521 * 2 1 3 29 29 H 1.09009 * 109.46896 * 119.99417 * 2 1 3 30 30 H 0.96998 * 119.99912 * 0.02562 * 8 6 4 31 31 H 1.08998 * 109.47092 * 60.00004 * 11 9 8 32 32 H 1.09007 * 109.47211 * 180.02562 * 11 9 8 33 33 H 1.09002 * 109.47270 * 299.99683 * 11 9 8 34 34 H 1.09002 * 109.46907 * 65.00202 * 12 9 8 35 35 H 1.08999 * 109.47133 * 185.00336 * 12 9 8 36 36 H 0.97000 * 120.00087 * 0.02562 * 13 12 9 37 37 H 0.97000 * 119.99740 * 180.02562 * 17 16 14 38 38 H 1.09007 * 115.54589 * 210.61407 * 22 4 3 39 39 H 1.08998 * 117.49749 * 214.96979 * 23 22 4 40 40 H 1.08996 * 117.50301 * 359.97438 * 23 22 4 41 41 H 1.09001 * 117.50361 * 359.97355 * 24 22 4 42 42 H 1.09000 * 117.50253 * 144.99256 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4298 1.4605 0.0543 5 1 3.8409 0.6138 0.6040 6 6 3.9868 1.4684 -1.3460 7 8 3.2350 1.4769 -2.2977 8 7 5.3204 1.4661 -1.5409 9 6 5.8619 1.4732 -2.9020 10 1 5.2155 2.0685 -3.5471 11 6 5.9297 0.0394 -3.4315 12 6 7.2668 2.0791 -2.8889 13 7 7.2202 3.4069 -2.2717 14 6 8.3669 4.1453 -2.1487 15 1 9.3055 3.7486 -2.5063 16 6 8.3229 5.4033 -1.5634 17 7 7.1789 5.8865 -1.1272 18 14 9.8869 6.4108 -1.3962 19 1 10.0649 7.2531 -2.6061 20 1 9.7890 7.2813 -0.1971 21 1 11.0501 5.4990 -1.2523 22 6 3.8113 2.7620 0.7623 23 6 2.6759 3.6986 1.1799 24 6 3.4367 2.8988 2.2393 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.9217 1.4589 -0.7798 31 1 4.9288 -0.3922 -3.4409 32 1 6.3330 0.0447 -4.4442 33 1 6.5760 -0.5559 -2.7866 34 1 7.9346 1.4355 -2.3163 35 1 7.6344 2.1663 -3.9113 36 1 6.3773 3.7627 -1.9496 37 1 7.1482 6.7657 -0.7185 38 1 4.7459 3.2183 0.4357 39 1 2.8634 4.7710 1.1282 40 1 1.6568 3.3878 0.9500 41 1 2.9181 2.0617 2.7067 42 1 4.1247 3.4451 2.8845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268645561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:53 Heat of formation + Delta-G solvation = -53.880319 kcal Electronic energy + Delta-G solvation = -21648.303177 eV Core-core repulsion = 18436.525682 eV Total energy + Delta-G solvation = -3211.777495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00160 -37.98995 -36.24134 -35.88905 -33.60876 -31.63921 -31.15507 -30.02295 -27.53034 -25.66016 -23.03203 -22.69634 -22.08434 -21.53905 -20.53118 -19.88190 -17.66375 -16.98316 -16.72361 -15.81054 -15.54680 -15.09945 -14.84436 -14.47190 -14.09184 -13.64803 -13.44355 -13.28008 -12.87853 -12.61901 -12.36817 -12.22651 -12.14453 -11.85809 -11.62630 -11.41451 -11.20485 -11.14754 -10.91424 -10.82965 -10.46668 -10.42716 -10.18503 -10.06100 -9.96540 -9.75425 -8.99378 -8.88965 -8.65464 -6.97245 -5.79346 -3.09118 2.87682 3.30499 3.41552 3.46845 3.48253 3.77644 4.04295 4.55932 4.77470 4.91762 4.93765 5.04077 5.19977 5.25035 5.29953 5.33491 5.36017 5.51822 5.53531 5.57216 5.65239 5.67613 5.83971 5.85928 6.01665 6.03167 6.09475 6.16484 6.19048 6.33931 6.38965 6.47806 6.49639 6.70410 6.95438 7.11576 7.66802 7.90554 8.38470 8.58665 9.50434 10.06273 10.42098 11.42802 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.005243 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.935416 B = 5338.888287 C = 6501.115078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.109 3.891 5 H 0.084 0.916 6 C 0.496 3.504 7 O -0.534 6.534 8 N -0.709 5.709 9 C 0.133 3.867 10 H 0.086 0.914 11 C -0.157 4.157 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.929 5.929 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.172 4.172 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.403 0.597 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 -12.929 5.153 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.047 3.953 5 H 0.101 0.899 6 C 0.281 3.719 7 O -0.410 6.410 8 N -0.362 5.362 9 C 0.028 3.972 10 H 0.104 0.896 11 C -0.215 4.215 12 C 0.016 3.984 13 N -0.376 5.376 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.178 4.178 23 C -0.192 4.192 24 C -0.209 4.209 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.238 0.762 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.350 -12.712 4.448 16.396 hybrid contribution 1.169 0.539 0.480 1.374 sum -8.181 -12.173 4.929 15.473 Atomic orbital electron populations 1.21698 0.93649 1.01982 1.03182 1.22542 0.95800 0.84010 0.99849 1.88000 1.18512 1.26076 1.94402 1.21375 0.82799 0.98549 0.92546 0.89860 1.21124 0.82717 0.76267 0.91766 1.90669 1.58223 1.49104 1.43040 1.46021 1.06424 1.74301 1.09458 1.21230 0.96430 0.96219 0.83316 0.89608 1.22095 1.01735 0.96528 1.01183 1.20979 0.92055 0.88198 0.97129 1.42359 1.09091 1.14200 1.71996 1.19215 0.87931 0.97403 1.32925 0.91181 1.24735 0.96858 0.97653 1.01444 1.69666 1.23745 1.18542 1.45815 0.86202 0.82631 0.80195 0.77203 1.21730 1.21785 1.20789 1.22354 1.01902 0.96576 0.96977 1.22828 0.97282 0.97431 1.01689 1.22933 1.03851 1.03213 0.90921 0.92001 0.91593 0.91325 0.93151 0.93664 0.76196 0.92602 0.91669 0.92616 0.95812 0.94934 0.77961 0.93493 0.85081 0.88606 0.87772 0.89144 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.64 6.48 37.16 0.24 0.88 16 3 O -0.35 -5.20 7.89 -55.09 -0.43 -5.63 16 4 C 0.11 1.57 2.86 -27.88 -0.08 1.49 16 5 H 0.08 0.98 7.76 -51.93 -0.40 0.57 16 6 C 0.50 8.54 7.06 -10.98 -0.08 8.46 16 7 O -0.53 -11.03 16.17 -14.30 -0.23 -11.26 16 8 N -0.71 -11.55 4.39 -53.81 -0.24 -11.78 16 9 C 0.13 2.27 2.73 -67.93 -0.19 2.08 16 10 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 11 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 12 C 0.14 2.81 5.82 -4.04 -0.02 2.78 16 13 N -0.73 -18.00 5.43 -59.91 -0.33 -18.33 16 14 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.16 -2.38 5.70 -90.63 -0.52 -2.89 16 23 C -0.16 -2.24 9.87 -26.74 -0.26 -2.50 16 24 C -0.17 -2.15 10.24 -26.74 -0.27 -2.42 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.44 8.03 -51.92 -0.42 0.02 16 30 H 0.40 6.14 8.60 -40.82 -0.35 5.79 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 10.14 7.33 -40.82 -0.30 9.84 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 2.25 7.99 -51.92 -0.41 1.84 16 39 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.10 1.50 7.03 -51.93 -0.36 1.14 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -31.88 352.00 -8.18 -40.05 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -7.26 Total: 13.61 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.69 Total: -2.22 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.16 Total: -56.90 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.67 Total: -16.89 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.88 -8.18 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268645561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.826 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds