Wall clock time and date at job start Mon Mar 30 2020 01:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.42906 * 114.00088 * 177.61746 * 3 2 1 5 5 H 1.08994 * 109.46967 * 329.51059 * 4 3 2 6 6 C 1.50700 * 109.46656 * 89.50822 * 4 3 2 7 7 O 1.21281 * 120.00609 * 5.00024 * 6 4 3 8 8 N 1.34781 * 119.99896 * 185.00190 * 6 4 3 9 9 C 1.46494 * 120.00186 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47171 * 34.99981 * 9 8 6 11 11 C 1.52997 * 109.47317 * 275.00172 * 9 8 6 12 12 C 1.53002 * 109.47210 * 154.99715 * 9 8 6 13 13 N 1.46500 * 109.47175 * 305.00403 * 12 9 8 14 14 C 1.36943 * 119.99914 * 179.97438 * 13 12 9 15 15 H 1.07996 * 119.99570 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99950 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99940 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99954 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47240 * 89.99720 * 18 16 14 20 20 H 1.48499 * 109.46840 * 209.99784 * 18 16 14 21 21 H 1.48500 * 109.47147 * 329.99467 * 18 16 14 22 22 C 1.52999 * 109.47010 * 209.50622 * 4 3 2 23 23 C 1.52990 * 117.52061 * 356.32153 * 22 4 3 24 24 C 1.52991 * 117.49988 * 64.95341 * 22 4 3 25 25 H 1.08995 * 109.47409 * 300.00669 * 1 2 3 26 26 H 1.09007 * 109.46432 * 60.00339 * 1 2 3 27 27 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47903 * 239.99521 * 2 1 3 29 29 H 1.09009 * 109.46896 * 119.99417 * 2 1 3 30 30 H 0.96998 * 119.99912 * 0.02562 * 8 6 4 31 31 H 1.08998 * 109.47092 * 60.00004 * 11 9 8 32 32 H 1.09007 * 109.47211 * 180.02562 * 11 9 8 33 33 H 1.09002 * 109.47270 * 299.99683 * 11 9 8 34 34 H 1.09002 * 109.46907 * 65.00202 * 12 9 8 35 35 H 1.08999 * 109.47133 * 185.00336 * 12 9 8 36 36 H 0.97000 * 120.00087 * 0.02562 * 13 12 9 37 37 H 0.97000 * 119.99740 * 180.02562 * 17 16 14 38 38 H 1.09007 * 115.54589 * 210.61407 * 22 4 3 39 39 H 1.08998 * 117.49749 * 214.96979 * 23 22 4 40 40 H 1.08996 * 117.50301 * 359.97438 * 23 22 4 41 41 H 1.09001 * 117.50361 * 359.97355 * 24 22 4 42 42 H 1.09000 * 117.50253 * 144.99256 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4298 1.4605 0.0543 5 1 3.8409 0.6138 0.6040 6 6 3.9868 1.4684 -1.3460 7 8 3.2350 1.4769 -2.2977 8 7 5.3204 1.4661 -1.5409 9 6 5.8619 1.4732 -2.9020 10 1 5.2155 2.0685 -3.5471 11 6 5.9297 0.0394 -3.4315 12 6 7.2668 2.0791 -2.8889 13 7 7.2202 3.4069 -2.2717 14 6 8.3669 4.1453 -2.1487 15 1 9.3055 3.7486 -2.5063 16 6 8.3229 5.4033 -1.5634 17 7 7.1789 5.8865 -1.1272 18 14 9.8869 6.4108 -1.3962 19 1 10.0649 7.2531 -2.6061 20 1 9.7890 7.2813 -0.1971 21 1 11.0501 5.4990 -1.2523 22 6 3.8113 2.7620 0.7623 23 6 2.6759 3.6986 1.1799 24 6 3.4367 2.8988 2.2393 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.9217 1.4589 -0.7798 31 1 4.9288 -0.3922 -3.4409 32 1 6.3330 0.0447 -4.4442 33 1 6.5760 -0.5559 -2.7866 34 1 7.9346 1.4355 -2.3163 35 1 7.6344 2.1663 -3.9113 36 1 6.3773 3.7627 -1.9496 37 1 7.1482 6.7657 -0.7185 38 1 4.7459 3.2183 0.4357 39 1 2.8634 4.7710 1.1282 40 1 1.6568 3.3878 0.9500 41 1 2.9181 2.0617 2.7067 42 1 4.1247 3.4451 2.8845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268645561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:52 Heat of formation + Delta-G solvation = -74.398962 kcal Electronic energy + Delta-G solvation = -21649.192933 eV Core-core repulsion = 18436.525682 eV Total energy + Delta-G solvation = -3212.667250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28961 -39.21388 -37.59806 -37.17346 -35.43036 -33.17086 -32.27937 -31.59227 -28.67419 -27.41085 -24.56475 -23.89371 -23.21346 -22.83327 -21.86711 -21.17465 -19.32328 -18.60629 -17.89712 -17.08572 -16.73839 -16.70602 -16.09783 -15.82008 -15.48235 -15.29668 -15.06053 -14.71502 -13.99355 -13.90932 -13.66222 -13.53565 -13.35764 -13.08729 -12.85972 -12.79977 -12.64174 -12.37271 -12.34228 -12.15345 -12.14823 -11.89281 -11.71145 -11.61942 -11.24870 -11.06766 -10.97086 -10.18894 -10.04926 -9.00609 -7.93113 -5.23034 1.48670 1.50001 1.54187 1.58265 2.09243 2.56350 2.65725 2.95100 3.40877 3.59031 3.75260 3.85659 3.92779 4.04052 4.15298 4.18463 4.26790 4.29173 4.32382 4.47742 4.51061 4.54013 4.78592 4.81869 4.82184 4.85679 4.92896 5.01999 5.04781 5.10609 5.24921 5.26220 5.29000 5.34539 5.51267 5.57701 6.08547 6.26953 6.58966 7.24899 7.34551 8.07552 8.31834 9.29515 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.005243 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.935416 B = 5338.888287 C = 6501.115078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.371 6.371 4 C 0.118 3.882 5 H 0.117 0.883 6 C 0.491 3.509 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.138 3.862 10 H 0.053 0.947 11 C -0.145 4.145 12 C 0.146 3.854 13 N -0.744 5.744 14 C -0.246 4.246 15 H 0.079 0.921 16 C -0.070 4.070 17 N -0.965 5.965 18 Si 0.971 3.029 19 H -0.292 1.292 20 H -0.297 1.297 21 H -0.267 1.267 22 C -0.175 4.175 23 C -0.170 4.170 24 C -0.140 4.140 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.410 0.590 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 -14.747 6.267 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 O -0.289 6.289 4 C 0.057 3.943 5 H 0.135 0.865 6 C 0.278 3.722 7 O -0.455 6.455 8 N -0.355 5.355 9 C 0.033 3.967 10 H 0.072 0.928 11 C -0.203 4.203 12 C 0.019 3.981 13 N -0.387 5.387 14 C -0.378 4.378 15 H 0.097 0.903 16 C -0.263 4.263 17 N -0.615 5.615 18 Si 0.801 3.199 19 H -0.220 1.220 20 H -0.223 1.223 21 H -0.192 1.192 22 C -0.194 4.194 23 C -0.207 4.207 24 C -0.176 4.176 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.245 0.755 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.206 0.794 37 H 0.058 0.942 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.549 -14.577 5.555 17.789 hybrid contribution 0.919 1.062 0.076 1.406 sum -7.631 -13.516 5.631 16.511 Atomic orbital electron populations 1.21717 0.92425 1.03456 1.02574 1.22787 0.96871 0.82751 1.00526 1.87989 1.18435 1.28128 1.94321 1.21336 0.82990 0.99347 0.90635 0.86528 1.21766 0.82521 0.75164 0.92758 1.90642 1.59097 1.51107 1.44624 1.45989 1.06496 1.73663 1.09381 1.21097 0.94304 0.97784 0.83468 0.92833 1.21990 1.02038 0.93992 1.02292 1.21128 0.93813 0.86205 0.96943 1.42541 1.07903 1.15938 1.72325 1.19628 0.88936 0.97625 1.31591 0.90337 1.25520 0.99681 0.99023 1.02070 1.69831 1.25797 1.18625 1.47293 0.85174 0.79657 0.78589 0.76503 1.21954 1.22321 1.19150 1.22220 1.00787 0.97042 0.99324 1.22819 0.97223 0.96952 1.03662 1.23009 1.02394 1.02848 0.89378 0.91326 0.93448 0.88813 0.94487 0.90824 0.75450 0.93134 0.90210 0.90546 0.93913 0.94566 0.79391 0.94150 0.87987 0.89804 0.87851 0.86699 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.05 1.01 6.48 71.98 0.47 1.48 16 3 O -0.37 -10.62 7.89 -129.99 -1.03 -11.64 16 4 C 0.12 3.30 2.86 29.85 0.09 3.39 16 5 H 0.12 2.43 7.76 -2.39 -0.02 2.42 16 6 C 0.49 17.04 7.06 87.66 0.62 17.66 16 7 O -0.58 -24.43 16.17 15.96 0.26 -24.17 16 8 N -0.70 -22.81 4.39 -442.54 -1.94 -24.75 16 9 C 0.14 4.70 2.73 44.99 0.12 4.83 16 10 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 11 C -0.14 -3.76 9.48 71.98 0.68 -3.08 16 12 C 0.15 5.54 5.82 86.38 0.50 6.04 16 13 N -0.74 -36.77 5.43 -343.44 -1.87 -38.63 16 14 C -0.25 -13.36 9.99 84.03 0.84 -12.52 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 17 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 18 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C -0.18 -5.18 5.70 -10.80 -0.06 -5.25 16 23 C -0.17 -4.90 9.87 30.59 0.30 -4.60 16 24 C -0.14 -3.23 10.24 30.59 0.31 -2.92 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.18 8.03 -2.38 -0.02 1.16 16 30 H 0.41 12.25 8.60 -92.71 -0.80 11.45 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.37 20.17 7.33 -92.71 -0.68 19.49 16 37 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.10 3.64 7.99 -2.38 -0.02 3.62 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.10 2.99 7.03 -2.39 -0.02 2.97 16 41 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.56 352.00 2.34 -67.22 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.48 Total: 42.91 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.08 Total: -0.34 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -3.53 Total: -121.39 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.77 Total: -35.82 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.56 2.34 -67.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268645561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.179 kcal (2) G-P(sol) polarization free energy of solvation -69.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds