Wall clock time and date at job start Mon Mar 30 2020 01:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00159 * 2 1 4 4 C 1.53001 * 109.46853 * 270.00275 * 3 2 1 5 5 C 1.53001 * 109.46764 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47304 * 180.02562 * 5 4 3 7 7 C 1.36930 * 120.00091 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00014 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47073 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47071 * 119.99832 * 11 9 7 14 14 H 1.48502 * 109.47006 * 239.99786 * 11 9 7 15 15 C 1.34771 * 119.99528 * 180.02562 * 2 1 3 16 16 O 1.21284 * 119.99655 * 186.39926 * 15 2 1 17 17 C 1.50702 * 120.00377 * 6.39117 * 15 2 1 18 18 H 1.08995 * 109.52314 * 307.07295 * 17 15 2 19 19 C 1.53183 * 109.52222 * 186.94116 * 17 15 2 20 20 C 1.53181 * 109.03384 * 183.11774 * 19 17 15 21 21 C 1.53085 * 109.16473 * 56.98108 * 20 19 17 22 22 O 1.42900 * 109.41890 * 302.39562 * 21 20 19 23 23 C 1.42901 * 114.10090 * 61.15365 * 22 21 20 24 24 H 1.09005 * 109.47326 * 264.44516 * 1 2 3 25 25 H 1.09005 * 109.47266 * 24.44498 * 1 2 3 26 26 H 1.08996 * 109.47884 * 144.44432 * 1 2 3 27 27 H 1.08998 * 109.46942 * 29.99778 * 3 2 1 28 28 H 1.08994 * 109.46842 * 150.00203 * 3 2 1 29 29 H 1.09001 * 109.47440 * 299.99596 * 4 3 2 30 30 H 1.08994 * 109.47455 * 60.00303 * 4 3 2 31 31 H 1.09003 * 109.47246 * 299.99461 * 5 4 3 32 32 H 1.08998 * 109.47552 * 59.99720 * 5 4 3 33 33 H 0.96995 * 119.99481 * 0.02562 * 6 5 4 34 34 H 0.97003 * 119.99843 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.54468 * 302.98542 * 19 17 15 36 36 H 1.08997 * 109.53884 * 63.25252 * 19 17 15 37 37 H 1.09003 * 109.51901 * 176.89378 * 20 19 17 38 38 H 1.09004 * 109.52216 * 297.07783 * 20 19 17 39 39 H 1.09001 * 109.48051 * 62.37424 * 21 20 19 40 40 H 1.09001 * 109.48117 * 182.39266 * 21 20 19 41 41 H 1.09000 * 109.48350 * 178.86643 * 23 22 21 42 42 H 1.09000 * 109.47724 * 58.82818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2181 3.0350 -1.4425 6 7 3.4617 3.4583 -2.8238 7 6 4.1347 4.6243 -3.0739 8 1 4.4857 5.2321 -2.2530 9 6 4.3651 5.0256 -4.3827 10 7 3.9370 4.2851 -5.3831 11 14 5.2826 6.6165 -4.7240 12 1 5.6540 7.2595 -3.4380 13 1 6.5117 6.3217 -5.5036 14 1 4.4111 7.5335 -5.5018 15 6 2.1388 -1.1672 -0.0005 16 8 3.3459 -1.1706 0.1165 17 6 1.3923 -2.4682 -0.1464 18 1 0.5982 -2.5180 0.5986 19 6 2.3592 -3.6388 0.0569 20 6 1.6067 -4.9535 -0.1705 21 6 0.9918 -4.9447 -1.5723 22 8 0.1277 -3.8143 -1.7050 23 6 0.7857 -2.5554 -1.5494 24 1 -0.3634 -0.0995 1.0229 25 1 -0.3634 0.9356 -0.4253 26 1 -0.3635 -0.8360 -0.5975 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.0415 0.9507 -1.9564 30 1 1.5001 1.8408 -1.9563 31 1 2.6294 3.7949 -0.9286 32 1 4.1705 2.9043 -0.9288 33 1 3.1455 2.9130 -3.5610 34 1 4.0976 4.5658 -6.2977 35 1 3.1807 -3.5610 -0.6551 36 1 2.7522 -3.6146 1.0733 37 1 2.3001 -5.7900 -0.0820 38 1 0.8163 -5.0542 0.5734 39 1 1.7855 -4.8847 -2.3171 40 1 0.4195 -5.8598 -1.7240 41 1 0.0646 -1.7491 -1.6843 42 1 1.5767 -2.4642 -2.2938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268783993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:32 Heat of formation + Delta-G solvation = -76.399865 kcal Electronic energy + Delta-G solvation = -21085.467304 eV Core-core repulsion = 17872.713288 eV Total energy + Delta-G solvation = -3212.754016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66879 -38.80401 -36.25349 -34.86128 -33.87508 -32.51577 -31.47328 -29.64676 -27.04984 -25.87341 -25.18227 -24.09104 -22.67972 -21.03892 -20.66369 -19.18190 -17.25960 -17.04400 -16.72286 -16.56509 -15.95593 -15.41802 -14.78481 -14.59369 -14.53203 -14.15700 -13.83872 -13.44725 -13.23704 -13.05552 -13.00945 -12.75127 -12.41342 -11.96504 -11.87222 -11.81778 -11.35558 -11.16205 -10.92400 -10.84874 -10.76043 -10.62741 -10.40013 -10.04750 -9.95974 -9.72244 -9.62217 -8.85073 -8.68051 -6.89270 -5.73799 -3.02458 2.50232 2.90231 3.45373 3.50660 3.53231 3.54360 4.22989 4.41733 4.53232 4.60526 4.62433 4.75786 4.84002 4.92065 5.09468 5.14369 5.24247 5.29785 5.37435 5.42568 5.45719 5.54505 5.57426 5.59296 5.70164 5.70840 5.82435 5.91599 6.01956 6.08981 6.30586 6.39568 6.52209 6.81458 6.86947 6.89617 7.29993 7.72957 8.09944 8.45124 9.56066 10.14509 10.49194 11.49363 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.003291 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.521210 B = 8505.075600 C = 8813.091516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.615 5.615 3 C 0.117 3.883 4 C -0.139 4.139 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C 0.518 3.482 16 O -0.531 6.531 17 C -0.142 4.142 18 H 0.102 0.898 19 C -0.104 4.104 20 C -0.155 4.155 21 C 0.055 3.945 22 O -0.377 6.377 23 C 0.065 3.935 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 -18.156 12.509 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.348 5.348 3 C -0.006 4.006 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C 0.305 3.695 16 O -0.407 6.407 17 C -0.164 4.164 18 H 0.120 0.880 19 C -0.142 4.142 20 C -0.193 4.193 21 C -0.021 4.021 22 O -0.295 6.295 23 C -0.012 4.012 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.975 -18.006 12.577 24.122 hybrid contribution 0.588 0.816 -0.424 1.092 sum -9.387 -17.190 12.152 23.050 Atomic orbital electron populations 1.22093 0.79632 1.04077 1.01969 1.47903 1.07001 1.06363 1.73578 1.21523 0.97644 0.83422 0.97977 1.22063 1.01072 0.98971 0.95651 1.20541 0.96041 0.91876 0.88727 1.42359 1.68317 1.26007 1.01090 1.19297 1.27700 0.98096 0.91840 0.91092 1.24758 1.01767 0.99090 0.95558 1.69679 1.51640 1.38867 0.98121 0.86098 0.79172 0.83076 0.77757 1.20535 1.21848 1.21874 1.20420 0.87814 0.84970 0.76285 1.90718 1.14244 1.87103 1.48615 1.21994 0.99852 0.93715 1.00798 0.87992 1.21426 0.97314 0.91868 1.03577 1.22222 1.00566 0.98202 0.98307 1.22655 0.94341 0.89260 0.95868 1.87960 1.35538 1.13695 1.92307 1.22741 0.98092 0.86753 0.93643 0.92485 0.90214 0.90471 0.90444 0.89667 0.91755 0.91918 0.96366 0.96206 0.78337 0.93589 0.90578 0.90833 0.90408 0.90992 0.92831 0.88675 0.87481 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 9.91 59.85 0.59 1.12 16 2 N -0.62 -7.36 2.87 -181.57 -0.52 -7.89 16 3 C 0.12 1.61 5.43 -4.04 -0.02 1.59 16 4 C -0.14 -2.35 5.65 -26.73 -0.15 -2.51 16 5 C 0.16 3.27 6.26 -4.04 -0.03 3.25 16 6 N -0.73 -19.47 5.60 -59.90 -0.34 -19.81 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 11 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 C 0.52 6.90 6.95 -10.99 -0.08 6.82 16 16 O -0.53 -9.23 15.48 5.55 0.09 -9.14 16 17 C -0.14 -1.42 1.91 -91.63 -0.17 -1.60 16 18 H 0.10 0.86 7.75 -51.93 -0.40 0.45 16 19 C -0.10 -1.02 4.69 -26.54 -0.12 -1.14 16 20 C -0.16 -1.15 6.14 -26.59 -0.16 -1.32 16 21 C 0.06 0.44 6.84 37.20 0.25 0.70 16 22 O -0.38 -3.82 10.77 -35.23 -0.38 -4.20 16 23 C 0.06 0.64 5.82 37.21 0.22 0.86 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 26 H 0.08 0.54 4.19 -51.93 -0.22 0.32 16 27 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.08 1.30 7.34 -51.93 -0.38 0.92 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.66 7.67 -40.82 -0.31 10.35 16 34 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.11 0.94 5.31 -51.93 -0.28 0.66 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -34.35 335.74 -7.34 -41.69 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.03 Total: 4.53 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.08 Total: 0.14 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.13 Total: -55.95 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.29 Total: -13.34 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.35 -7.34 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268783993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.708 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds