Wall clock time and date at job start Mon Mar 30 2020 01:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00159 * 2 1 4 4 C 1.53001 * 109.46853 * 270.00275 * 3 2 1 5 5 C 1.53001 * 109.46764 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47304 * 180.02562 * 5 4 3 7 7 C 1.36930 * 120.00091 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00014 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47073 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47071 * 119.99832 * 11 9 7 14 14 H 1.48502 * 109.47006 * 239.99786 * 11 9 7 15 15 C 1.34771 * 119.99528 * 180.02562 * 2 1 3 16 16 O 1.21284 * 119.99655 * 186.39926 * 15 2 1 17 17 C 1.50702 * 120.00377 * 6.39117 * 15 2 1 18 18 H 1.08995 * 109.52314 * 307.07295 * 17 15 2 19 19 C 1.53183 * 109.52222 * 186.94116 * 17 15 2 20 20 C 1.53181 * 109.03384 * 183.11774 * 19 17 15 21 21 C 1.53085 * 109.16473 * 56.98108 * 20 19 17 22 22 O 1.42900 * 109.41890 * 302.39562 * 21 20 19 23 23 C 1.42901 * 114.10090 * 61.15365 * 22 21 20 24 24 H 1.09005 * 109.47326 * 264.44516 * 1 2 3 25 25 H 1.09005 * 109.47266 * 24.44498 * 1 2 3 26 26 H 1.08996 * 109.47884 * 144.44432 * 1 2 3 27 27 H 1.08998 * 109.46942 * 29.99778 * 3 2 1 28 28 H 1.08994 * 109.46842 * 150.00203 * 3 2 1 29 29 H 1.09001 * 109.47440 * 299.99596 * 4 3 2 30 30 H 1.08994 * 109.47455 * 60.00303 * 4 3 2 31 31 H 1.09003 * 109.47246 * 299.99461 * 5 4 3 32 32 H 1.08998 * 109.47552 * 59.99720 * 5 4 3 33 33 H 0.96995 * 119.99481 * 0.02562 * 6 5 4 34 34 H 0.97003 * 119.99843 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.54468 * 302.98542 * 19 17 15 36 36 H 1.08997 * 109.53884 * 63.25252 * 19 17 15 37 37 H 1.09003 * 109.51901 * 176.89378 * 20 19 17 38 38 H 1.09004 * 109.52216 * 297.07783 * 20 19 17 39 39 H 1.09001 * 109.48051 * 62.37424 * 21 20 19 40 40 H 1.09001 * 109.48117 * 182.39266 * 21 20 19 41 41 H 1.09000 * 109.48350 * 178.86643 * 23 22 21 42 42 H 1.09000 * 109.47724 * 58.82818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2181 3.0350 -1.4425 6 7 3.4617 3.4583 -2.8238 7 6 4.1347 4.6243 -3.0739 8 1 4.4857 5.2321 -2.2530 9 6 4.3651 5.0256 -4.3827 10 7 3.9370 4.2851 -5.3831 11 14 5.2826 6.6165 -4.7240 12 1 5.6540 7.2595 -3.4380 13 1 6.5117 6.3217 -5.5036 14 1 4.4111 7.5335 -5.5018 15 6 2.1388 -1.1672 -0.0005 16 8 3.3459 -1.1706 0.1165 17 6 1.3923 -2.4682 -0.1464 18 1 0.5982 -2.5180 0.5986 19 6 2.3592 -3.6388 0.0569 20 6 1.6067 -4.9535 -0.1705 21 6 0.9918 -4.9447 -1.5723 22 8 0.1277 -3.8143 -1.7050 23 6 0.7857 -2.5554 -1.5494 24 1 -0.3634 -0.0995 1.0229 25 1 -0.3634 0.9356 -0.4253 26 1 -0.3635 -0.8360 -0.5975 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.0415 0.9507 -1.9564 30 1 1.5001 1.8408 -1.9563 31 1 2.6294 3.7949 -0.9286 32 1 4.1705 2.9043 -0.9288 33 1 3.1455 2.9130 -3.5610 34 1 4.0976 4.5658 -6.2977 35 1 3.1807 -3.5610 -0.6551 36 1 2.7522 -3.6146 1.0733 37 1 2.3001 -5.7900 -0.0820 38 1 0.8163 -5.0542 0.5734 39 1 1.7855 -4.8847 -2.3171 40 1 0.4195 -5.8598 -1.7240 41 1 0.0646 -1.7491 -1.6843 42 1 1.5767 -2.4642 -2.2938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268783993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:32 Heat of formation + Delta-G solvation = -100.394050 kcal Electronic energy + Delta-G solvation = -21086.507770 eV Core-core repulsion = 17872.713288 eV Total energy + Delta-G solvation = -3213.794482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60242 -39.66006 -37.59683 -36.47080 -34.74030 -34.08910 -32.61299 -31.25178 -28.00903 -27.16810 -26.06800 -25.34816 -24.16056 -22.57893 -21.51734 -20.14237 -19.17433 -18.21233 -17.59856 -17.37535 -16.97738 -16.50569 -16.27549 -16.00760 -15.60427 -15.29089 -15.18701 -14.78752 -14.62106 -14.24767 -13.83998 -13.65618 -13.47399 -13.38742 -12.96585 -12.80501 -12.73653 -12.60721 -12.42136 -12.11966 -12.05187 -11.88823 -11.82309 -11.79785 -11.37593 -10.97961 -10.91631 -10.51747 -9.70282 -9.05001 -7.98348 -5.28493 1.45552 1.47369 1.47631 1.57782 1.95723 2.54243 2.82569 3.35272 3.41201 3.64475 3.71737 3.85528 3.93493 3.99833 4.11457 4.14442 4.21050 4.27922 4.44286 4.50633 4.55849 4.58307 4.61225 4.71456 4.73190 4.79608 4.86397 4.90170 4.97943 5.03903 5.11061 5.25224 5.27769 5.29846 5.46240 5.51570 6.09551 6.23870 6.34074 7.08411 7.29453 8.04193 8.27860 9.25668 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.003291 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.521210 B = 8505.075600 C = 8813.091516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.613 5.613 3 C 0.125 3.875 4 C -0.121 4.121 5 C 0.154 3.846 6 N -0.749 5.749 7 C -0.249 4.249 8 H 0.077 0.923 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.978 3.022 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.289 1.289 15 C 0.511 3.489 16 O -0.581 6.581 17 C -0.132 4.132 18 H 0.128 0.872 19 C -0.106 4.106 20 C -0.146 4.146 21 C 0.048 3.952 22 O -0.385 6.385 23 C 0.068 3.932 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.013 0.987 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 -18.283 13.803 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.345 5.345 3 C 0.001 3.999 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.381 4.381 8 H 0.095 0.905 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.807 3.193 12 H -0.189 1.189 13 H -0.220 1.220 14 H -0.216 1.216 15 C 0.300 3.700 16 O -0.461 6.461 17 C -0.153 4.153 18 H 0.146 0.854 19 C -0.144 4.144 20 C -0.184 4.184 21 C -0.028 4.028 22 O -0.303 6.303 23 C -0.009 4.009 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.204 0.796 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.617 -18.137 13.917 25.643 hybrid contribution 1.070 0.814 -0.788 1.559 sum -10.546 -17.323 13.129 24.160 Atomic orbital electron populations 1.22380 0.76829 1.05155 1.03907 1.47994 1.08673 1.05261 1.72543 1.21331 0.97926 0.85124 0.95482 1.21866 1.00201 0.96078 0.97858 1.20704 0.96424 0.94111 0.86011 1.42610 1.68198 1.25446 1.02949 1.19716 1.27343 0.98810 0.92221 0.90481 1.25652 1.03189 1.02718 0.95421 1.69838 1.53231 1.40782 0.98313 0.85007 0.77472 0.78934 0.77936 1.18903 1.22029 1.21613 1.21058 0.87426 0.86302 0.75248 1.90694 1.16539 1.87886 1.50994 1.21977 1.00016 0.91750 1.01581 0.85426 1.21432 0.97011 0.93373 1.02611 1.22183 1.00851 0.97098 0.98225 1.22865 0.94478 0.89418 0.96073 1.87951 1.36044 1.13974 1.92346 1.22697 0.97835 0.87485 0.92885 0.90089 0.89372 0.89199 0.87446 0.91549 0.94515 0.91100 0.94747 0.96922 0.79617 0.93902 0.93026 0.91228 0.88948 0.89690 0.93457 0.86429 0.86164 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 9.91 127.77 1.27 2.04 16 2 N -0.61 -13.83 2.87 -846.76 -2.43 -16.26 16 3 C 0.12 3.31 5.43 86.38 0.47 3.78 16 4 C -0.12 -4.10 5.65 30.60 0.17 -3.93 16 5 C 0.15 6.45 6.26 86.38 0.54 6.99 16 6 N -0.75 -40.24 5.60 -343.43 -1.92 -42.17 16 7 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 10 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 11 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 15 C 0.51 13.50 6.95 87.66 0.61 14.11 16 16 O -0.58 -20.98 15.48 -3.04 -0.05 -21.03 16 17 C -0.13 -2.49 1.91 -11.45 -0.02 -2.52 16 18 H 0.13 1.78 7.75 -2.39 -0.02 1.76 16 19 C -0.11 -2.05 4.69 30.72 0.14 -1.90 16 20 C -0.15 -1.90 6.14 30.68 0.19 -1.72 16 21 C 0.05 0.69 6.84 72.01 0.49 1.18 16 22 O -0.38 -7.13 10.77 -148.98 -1.60 -8.73 16 23 C 0.07 1.28 5.82 72.01 0.42 1.70 16 24 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.09 1.07 8.03 -2.38 -0.02 1.05 16 26 H 0.09 0.98 4.19 -2.39 -0.01 0.97 16 27 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 28 H 0.07 2.04 7.34 -2.39 -0.02 2.02 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.37 21.23 7.67 -92.71 -0.71 20.52 16 34 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 1.88 5.31 -2.39 -0.01 1.87 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.18 335.74 2.18 -73.01 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.29 Total: 24.89 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.59 Total: 1.94 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -4.07 Total: -119.23 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.65 Total: -29.76 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -75.18 2.18 -73.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268783993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.386 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds