Wall clock time and date at job start Mon Mar 30 2020 01:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00102 * 2 1 4 4 C 1.52992 * 109.47485 * 270.00258 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47586 * 89.99558 * 11 9 7 13 13 H 1.48505 * 109.47293 * 210.00502 * 11 9 7 14 14 H 1.48505 * 109.46772 * 329.99807 * 11 9 7 15 15 C 1.34776 * 120.00414 * 180.02562 * 2 1 3 16 16 O 1.21275 * 120.00456 * 180.02562 * 15 2 1 17 17 C 1.50698 * 119.99503 * 359.97438 * 15 2 1 18 18 H 1.08996 * 109.48374 * 305.02596 * 17 15 2 19 19 C 1.53097 * 109.47986 * 65.06183 * 17 15 2 20 20 C 1.53177 * 109.16172 * 177.58650 * 19 17 15 21 21 C 1.53170 * 109.04135 * 303.02027 * 20 19 17 22 22 C 1.53095 * 109.16360 * 56.97906 * 21 20 19 23 23 O 1.42901 * 109.41617 * 302.39549 * 22 21 20 24 24 H 1.09000 * 109.47121 * 89.99670 * 1 2 3 25 25 H 1.09001 * 109.46705 * 210.00337 * 1 2 3 26 26 H 1.09004 * 109.46774 * 329.99905 * 1 2 3 27 27 H 1.09002 * 109.47280 * 149.99962 * 3 2 1 28 28 H 1.09001 * 109.46702 * 30.00155 * 3 2 1 29 29 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 30 30 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 33 33 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 34 34 H 0.97010 * 119.99864 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.52184 * 297.49172 * 19 17 15 36 36 H 1.08996 * 109.52228 * 57.68577 * 19 17 15 37 37 H 1.08997 * 109.54160 * 183.14742 * 20 19 17 38 38 H 1.09005 * 109.61315 * 62.93627 * 20 19 17 39 39 H 1.09004 * 109.51928 * 297.07694 * 21 20 19 40 40 H 1.08994 * 109.52568 * 176.88551 * 21 20 19 41 41 H 1.08997 * 109.48244 * 182.40795 * 22 21 20 42 42 H 1.09006 * 109.48717 * 62.38058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2170 3.0358 -1.4424 6 7 3.4617 3.4585 -2.8236 7 6 4.1340 4.6249 -3.0738 8 1 4.4843 5.2331 -2.2529 9 6 4.3654 5.0256 -4.3825 10 7 5.0121 6.1465 -4.6230 11 14 3.7589 3.9742 -5.8024 12 1 2.3855 4.3950 -6.1788 13 1 4.6653 4.1439 -6.9664 14 1 3.7440 2.5474 -5.3906 15 6 2.1390 -1.1671 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3855 -2.4722 -0.0005 18 1 0.6933 -2.4924 0.8412 19 6 0.6026 -2.6098 -1.3090 20 6 -0.1119 -3.9646 -1.3274 21 6 0.9244 -5.0785 -1.1502 22 6 1.6948 -4.8456 0.1521 23 8 2.3095 -3.5560 0.1164 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 3.1500 1.1385 0.5138 28 1 1.6084 2.0284 0.5139 29 1 1.5001 1.8409 -1.9562 30 1 3.0415 0.9509 -1.9563 31 1 4.1694 2.9059 -0.9284 32 1 2.6275 3.7952 -0.9286 33 1 3.1467 2.9125 -3.5609 34 1 5.1734 6.4267 -5.5376 35 1 -0.1333 -1.8089 -1.3791 36 1 1.2900 -2.5491 -2.1528 37 1 -0.6258 -4.0928 -2.2800 38 1 -0.8361 -4.0074 -0.5138 39 1 1.6183 -5.0675 -1.9908 40 1 0.4187 -6.0430 -1.1067 41 1 2.4626 -5.6114 0.2622 42 1 1.0066 -4.8970 0.9959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268786590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:28 Heat of formation + Delta-G solvation = -71.104104 kcal Electronic energy + Delta-G solvation = -21153.166727 eV Core-core repulsion = 17940.642353 eV Total energy + Delta-G solvation = -3212.524374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65299 -38.78100 -36.24785 -35.08338 -33.95767 -32.61454 -31.55649 -30.09039 -27.18525 -26.59432 -24.80298 -24.08464 -22.36897 -21.04538 -20.79564 -19.50214 -17.54939 -17.48254 -16.92508 -16.12219 -15.69395 -15.47064 -14.86844 -14.77278 -14.43551 -14.29728 -13.99352 -13.69216 -13.29252 -13.08527 -12.86918 -12.73969 -12.61480 -12.18100 -12.03726 -11.83639 -11.55090 -11.40786 -11.16291 -10.89845 -10.87000 -10.72960 -10.47422 -10.10444 -9.87940 -9.63179 -9.54995 -8.85288 -8.77064 -7.18679 -5.72879 -3.08039 2.48748 2.58151 3.40579 3.44348 3.48030 3.62619 4.16861 4.37724 4.40318 4.54939 4.56426 4.63195 4.70715 4.81916 4.99256 5.05966 5.12324 5.18850 5.23862 5.26969 5.37434 5.41010 5.51373 5.55915 5.61426 5.62371 5.66702 5.79806 5.87022 5.93762 6.05021 6.27887 6.41399 6.77059 6.78647 6.82366 7.23249 8.03692 8.09067 8.46481 9.25615 9.98228 10.18468 11.45696 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.003642 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.005325 B = 7686.422169 C = 8089.614646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.614 5.614 3 C 0.120 3.880 4 C -0.144 4.144 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.517 3.483 16 O -0.511 6.511 17 C 0.077 3.923 18 H 0.081 0.919 19 C -0.155 4.155 20 C -0.120 4.120 21 C -0.160 4.160 22 C 0.060 3.940 23 O -0.354 6.354 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.106 -22.846 11.394 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.349 5.349 3 C -0.002 4.002 4 C -0.183 4.183 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.303 3.697 16 O -0.384 6.384 17 C 0.016 3.984 18 H 0.099 0.901 19 C -0.192 4.192 20 C -0.157 4.157 21 C -0.198 4.198 22 C -0.017 4.017 23 O -0.272 6.272 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.106 -22.609 11.459 29.507 hybrid contribution -0.813 -0.707 -1.233 1.637 sum -15.919 -23.316 10.226 30.026 Atomic orbital electron populations 1.21978 0.79731 1.03204 1.02084 1.47800 1.06916 1.06044 1.74171 1.21516 0.97777 0.83087 0.97806 1.22114 1.00993 0.99005 0.96157 1.20521 0.96667 0.91896 0.87657 1.42707 1.69710 1.26193 1.01630 1.19086 1.27775 0.96775 0.93636 0.89162 1.24672 1.00497 0.97212 0.96901 1.69709 1.46207 1.23028 1.19434 0.86528 0.78397 0.80354 0.83190 1.21103 1.21667 1.20358 1.20137 0.88035 0.84600 0.76924 1.90753 1.13580 1.86825 1.47275 1.21869 0.91096 0.86950 0.98466 0.90125 1.22304 1.00275 0.98973 0.97687 1.21577 0.97603 0.93848 1.02689 1.22230 0.98909 0.99149 0.99465 1.22660 0.97743 0.85073 0.96250 1.88085 1.31665 1.13202 1.94246 0.92088 0.91231 0.90464 0.89515 0.90085 0.92012 0.91628 0.95338 0.95478 0.80724 0.93088 0.89529 0.90220 0.90889 0.91586 0.90715 0.90653 0.88338 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.97 59.85 0.54 1.06 16 2 N -0.61 -7.12 2.87 -181.57 -0.52 -7.65 16 3 C 0.12 1.59 5.45 -4.04 -0.02 1.57 16 4 C -0.14 -2.34 5.65 -26.74 -0.15 -2.49 16 5 C 0.16 3.24 6.26 -4.04 -0.03 3.21 16 6 N -0.76 -19.04 5.41 -59.91 -0.32 -19.36 16 7 C -0.24 -7.18 10.47 -15.06 -0.16 -7.33 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 9 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 10 N -0.94 -30.20 13.97 55.49 0.78 -29.42 16 11 Si 0.88 22.86 27.74 -169.99 -4.71 18.15 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 14 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 15 C 0.52 7.23 7.10 -10.99 -0.08 7.15 16 16 O -0.51 -9.68 16.09 -14.29 -0.23 -9.91 16 17 C 0.08 0.81 2.24 -27.83 -0.06 0.75 16 18 H 0.08 0.64 7.13 -51.93 -0.37 0.27 16 19 C -0.15 -1.30 5.12 -26.59 -0.14 -1.44 16 20 C -0.12 -0.75 6.03 -26.55 -0.16 -0.91 16 21 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 22 C 0.06 0.47 6.84 37.21 0.25 0.73 16 23 O -0.35 -4.42 9.94 -55.09 -0.55 -4.96 16 24 H 0.06 0.40 7.07 -51.93 -0.37 0.04 16 25 H 0.07 0.35 6.06 -51.93 -0.31 0.03 16 26 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 27 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.36 8.86 5.53 -40.82 -0.23 8.63 16 34 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 35 H 0.09 0.58 5.18 -51.93 -0.27 0.31 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -36.88 332.62 -7.80 -44.69 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.99 Total: 2.42 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.26 Total: 1.05 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.07 Total: -56.43 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.78 Total: -14.88 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.71 Total: 18.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.88 -7.80 -44.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268786590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.419 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds