Wall clock time and date at job start Mon Mar 30 2020 01:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00102 * 2 1 4 4 C 1.52992 * 109.47485 * 270.00258 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47586 * 89.99558 * 11 9 7 13 13 H 1.48505 * 109.47293 * 210.00502 * 11 9 7 14 14 H 1.48505 * 109.46772 * 329.99807 * 11 9 7 15 15 C 1.34776 * 120.00414 * 180.02562 * 2 1 3 16 16 O 1.21275 * 120.00456 * 180.02562 * 15 2 1 17 17 C 1.50698 * 119.99503 * 359.97438 * 15 2 1 18 18 H 1.08996 * 109.48374 * 305.02596 * 17 15 2 19 19 C 1.53097 * 109.47986 * 65.06183 * 17 15 2 20 20 C 1.53177 * 109.16172 * 177.58650 * 19 17 15 21 21 C 1.53170 * 109.04135 * 303.02027 * 20 19 17 22 22 C 1.53095 * 109.16360 * 56.97906 * 21 20 19 23 23 O 1.42901 * 109.41617 * 302.39549 * 22 21 20 24 24 H 1.09000 * 109.47121 * 89.99670 * 1 2 3 25 25 H 1.09001 * 109.46705 * 210.00337 * 1 2 3 26 26 H 1.09004 * 109.46774 * 329.99905 * 1 2 3 27 27 H 1.09002 * 109.47280 * 149.99962 * 3 2 1 28 28 H 1.09001 * 109.46702 * 30.00155 * 3 2 1 29 29 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 30 30 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 33 33 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 34 34 H 0.97010 * 119.99864 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.52184 * 297.49172 * 19 17 15 36 36 H 1.08996 * 109.52228 * 57.68577 * 19 17 15 37 37 H 1.08997 * 109.54160 * 183.14742 * 20 19 17 38 38 H 1.09005 * 109.61315 * 62.93627 * 20 19 17 39 39 H 1.09004 * 109.51928 * 297.07694 * 21 20 19 40 40 H 1.08994 * 109.52568 * 176.88551 * 21 20 19 41 41 H 1.08997 * 109.48244 * 182.40795 * 22 21 20 42 42 H 1.09006 * 109.48717 * 62.38058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2170 3.0358 -1.4424 6 7 3.4617 3.4585 -2.8236 7 6 4.1340 4.6249 -3.0738 8 1 4.4843 5.2331 -2.2529 9 6 4.3654 5.0256 -4.3825 10 7 5.0121 6.1465 -4.6230 11 14 3.7589 3.9742 -5.8024 12 1 2.3855 4.3950 -6.1788 13 1 4.6653 4.1439 -6.9664 14 1 3.7440 2.5474 -5.3906 15 6 2.1390 -1.1671 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3855 -2.4722 -0.0005 18 1 0.6933 -2.4924 0.8412 19 6 0.6026 -2.6098 -1.3090 20 6 -0.1119 -3.9646 -1.3274 21 6 0.9244 -5.0785 -1.1502 22 6 1.6948 -4.8456 0.1521 23 8 2.3095 -3.5560 0.1164 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 3.1500 1.1385 0.5138 28 1 1.6084 2.0284 0.5139 29 1 1.5001 1.8409 -1.9562 30 1 3.0415 0.9509 -1.9563 31 1 4.1694 2.9059 -0.9284 32 1 2.6275 3.7952 -0.9286 33 1 3.1467 2.9125 -3.5609 34 1 5.1734 6.4267 -5.5376 35 1 -0.1333 -1.8089 -1.3791 36 1 1.2900 -2.5491 -2.1528 37 1 -0.6258 -4.0928 -2.2800 38 1 -0.8361 -4.0074 -0.5138 39 1 1.6183 -5.0675 -1.9908 40 1 0.4187 -6.0430 -1.1067 41 1 2.4626 -5.6114 0.2622 42 1 1.0066 -4.8970 0.9959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268786590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:28 Heat of formation + Delta-G solvation = -97.332894 kcal Electronic energy + Delta-G solvation = -21154.304093 eV Core-core repulsion = 17940.642353 eV Total energy + Delta-G solvation = -3213.661740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53623 -39.61689 -37.62836 -36.59582 -34.69597 -34.19173 -32.85483 -31.55208 -28.08900 -27.62435 -25.97979 -24.80849 -24.01821 -22.68811 -21.36820 -20.45355 -19.68099 -18.39904 -17.81041 -16.82339 -16.81369 -16.44877 -16.34824 -15.99164 -15.59420 -15.45031 -15.07810 -14.88243 -14.63723 -14.23301 -13.87950 -13.66142 -13.62578 -13.50387 -13.13263 -12.84976 -12.77958 -12.55970 -12.46619 -12.13457 -12.07703 -11.92919 -11.85734 -11.80856 -11.37138 -11.00981 -10.70092 -10.48707 -9.74855 -9.34942 -8.06627 -5.40980 1.34273 1.38549 1.45761 1.48117 1.71908 2.45127 2.91616 3.24301 3.41261 3.58430 3.74487 3.84384 3.94195 4.01000 4.01650 4.17043 4.17929 4.32839 4.38370 4.46466 4.56509 4.60790 4.67416 4.72018 4.75158 4.84256 4.86430 4.91378 5.04327 5.09459 5.16593 5.22355 5.24786 5.35358 5.48703 5.71158 6.07888 6.17691 6.36576 7.03144 7.10162 7.79114 7.98464 9.14962 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.003642 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.005325 B = 7686.422169 C = 8089.614646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.608 5.608 3 C 0.124 3.876 4 C -0.126 4.126 5 C 0.156 3.844 6 N -0.762 5.762 7 C -0.241 4.241 8 H 0.057 0.943 9 C -0.064 4.064 10 N -0.983 5.983 11 Si 0.959 3.041 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.505 3.495 16 O -0.577 6.577 17 C 0.081 3.919 18 H 0.115 0.885 19 C -0.151 4.151 20 C -0.116 4.116 21 C -0.159 4.159 22 C 0.052 3.948 23 O -0.397 6.397 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.014 0.986 32 H 0.042 0.958 33 H 0.365 0.635 34 H 0.260 0.740 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.809 -24.877 11.602 33.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C 0.001 3.999 4 C -0.165 4.165 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.372 4.372 8 H 0.075 0.925 9 C -0.256 4.256 10 N -0.633 5.633 11 Si 0.785 3.215 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.185 1.185 15 C 0.294 3.706 16 O -0.456 6.456 17 C 0.020 3.980 18 H 0.132 0.868 19 C -0.188 4.188 20 C -0.153 4.153 21 C -0.197 4.197 22 C -0.024 4.024 23 O -0.316 6.316 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.198 0.802 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.885 -24.667 11.702 33.198 hybrid contribution 0.363 -0.042 -1.187 1.242 sum -18.522 -24.709 10.515 32.622 Atomic orbital electron populations 1.22368 0.76408 1.05624 1.03558 1.47881 1.08861 1.04681 1.72673 1.21375 0.97979 0.84878 0.95637 1.21923 1.00556 0.95761 0.98272 1.20694 0.96833 0.94346 0.85144 1.42750 1.69243 1.24915 1.03824 1.19080 1.27420 0.97718 0.92938 0.92453 1.25549 1.01197 0.98797 1.00020 1.69891 1.48077 1.25252 1.20121 0.85357 0.78160 0.79137 0.78812 1.19487 1.21939 1.18539 1.20994 0.87614 0.86404 0.75633 1.90715 1.16505 1.87861 1.50509 1.21979 0.90650 0.84634 1.00734 0.86778 1.22311 0.99924 1.01336 0.95272 1.21608 0.97508 0.91916 1.04263 1.22232 0.98753 1.00740 0.97937 1.22904 0.98383 0.83295 0.97800 1.88034 1.33882 1.15061 1.94626 0.90974 0.88535 0.88527 0.91932 0.86738 0.90156 0.94268 0.96761 0.94043 0.80218 0.93163 0.87396 0.93305 0.89898 0.89056 0.92793 0.88280 0.88215 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.97 127.77 1.15 1.76 16 2 N -0.61 -12.88 2.87 -846.76 -2.43 -15.32 16 3 C 0.12 3.13 5.45 86.38 0.47 3.60 16 4 C -0.13 -3.97 5.65 30.59 0.17 -3.79 16 5 C 0.16 6.27 6.26 86.38 0.54 6.81 16 6 N -0.76 -38.04 5.41 -343.45 -1.86 -39.90 16 7 C -0.24 -14.46 10.47 84.03 0.88 -13.58 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 10 N -0.98 -64.80 13.97 21.65 0.30 -64.50 16 11 Si 0.96 47.14 27.74 68.60 1.90 49.04 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 15 C 0.51 13.90 7.10 87.66 0.62 14.53 16 16 O -0.58 -22.90 16.09 15.97 0.26 -22.64 16 17 C 0.08 1.55 2.24 29.88 0.07 1.61 16 18 H 0.11 1.37 7.13 -2.39 -0.02 1.35 16 19 C -0.15 -2.18 5.12 30.69 0.16 -2.02 16 20 C -0.12 -1.05 6.03 30.71 0.19 -0.86 16 21 C -0.16 -1.78 6.14 30.68 0.19 -1.60 16 22 C 0.05 0.74 6.84 72.01 0.49 1.24 16 23 O -0.40 -9.76 9.94 -129.99 -1.29 -11.05 16 24 H 0.07 0.61 7.07 -2.39 -0.02 0.60 16 25 H 0.10 0.47 6.06 -2.39 -0.01 0.45 16 26 H 0.10 0.65 7.89 -2.39 -0.02 0.63 16 27 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 28 H 0.11 2.12 7.89 -2.39 -0.02 2.10 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.36 17.41 5.53 -92.71 -0.51 16.90 16 34 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16 35 H 0.11 1.04 5.18 -2.39 -0.01 1.03 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -84.48 332.62 2.69 -81.78 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.43 Total: 18.35 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.39 Total: 4.23 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -3.99 Total: -119.72 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.04 Total: -33.69 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.90 Total: 49.04 kcal Total: -84.48 2.69 -81.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268786590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.548 kcal (2) G-P(sol) polarization free energy of solvation -84.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds