Wall clock time and date at job start Mon Mar 30 2020 01:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99791 * 2 1 4 4 C 1.52992 * 109.47228 * 269.99945 * 3 2 1 5 5 C 1.53000 * 109.47296 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47186 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99598 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99700 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00133 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99935 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47308 * 89.99929 * 11 9 7 13 13 H 1.48507 * 109.47197 * 209.99891 * 11 9 7 14 14 H 1.48495 * 109.47151 * 329.99645 * 11 9 7 15 15 C 1.34774 * 120.00289 * 179.97438 * 2 1 3 16 16 O 1.21283 * 120.00288 * 179.97438 * 15 2 1 17 17 C 1.50700 * 119.99737 * 0.02562 * 15 2 1 18 18 H 1.09002 * 109.48161 * 54.99676 * 17 15 2 19 19 C 1.53093 * 109.47903 * 294.97243 * 17 15 2 20 20 C 1.53178 * 109.16255 * 182.39629 * 19 17 15 21 21 C 1.53178 * 109.03511 * 56.98447 * 20 19 17 22 22 C 1.53096 * 109.16278 * 303.01594 * 21 20 19 23 23 O 1.42904 * 109.47876 * 175.02146 * 17 15 2 24 24 H 1.08996 * 109.47394 * 269.99722 * 1 2 3 25 25 H 1.09006 * 109.47342 * 29.99961 * 1 2 3 26 26 H 1.09001 * 109.47129 * 150.00017 * 1 2 3 27 27 H 1.08996 * 109.46815 * 30.00148 * 3 2 1 28 28 H 1.08999 * 109.46851 * 150.00044 * 3 2 1 29 29 H 1.09009 * 109.47122 * 300.00045 * 4 3 2 30 30 H 1.08995 * 109.47494 * 59.99942 * 4 3 2 31 31 H 1.08999 * 109.47043 * 299.99909 * 5 4 3 32 32 H 1.08999 * 109.47017 * 59.99957 * 5 4 3 33 33 H 0.97000 * 120.00004 * 359.97438 * 6 5 4 34 34 H 0.97000 * 120.00208 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.52228 * 302.30610 * 19 17 15 36 36 H 1.08998 * 109.52401 * 62.49459 * 19 17 15 37 37 H 1.09002 * 109.54461 * 176.84793 * 20 19 17 38 38 H 1.08992 * 109.54753 * 297.02597 * 20 19 17 39 39 H 1.08999 * 109.52488 * 62.92180 * 21 20 19 40 40 H 1.08996 * 109.52248 * 183.05161 * 21 20 19 41 41 H 1.09003 * 109.48254 * 177.58780 * 22 21 20 42 42 H 1.08992 * 109.48305 * 297.61902 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2180 3.0352 -1.4424 6 7 3.4627 3.4578 -2.8237 7 6 4.1359 4.6237 -3.0738 8 1 4.4861 5.2320 -2.2529 9 6 4.3682 5.0239 -4.3825 10 7 5.0149 6.1448 -4.6231 11 14 3.7619 3.9723 -5.8024 12 1 2.3889 4.3940 -6.1797 13 1 4.6689 4.1412 -6.9661 14 1 3.7459 2.5458 -5.3902 15 6 2.1389 -1.1671 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4722 0.0005 18 1 0.6935 -2.4925 -0.8415 19 6 0.6019 -2.6094 1.3086 20 6 -0.1129 -3.9640 1.3269 21 6 0.9234 -5.0782 1.1504 22 6 1.6944 -4.8457 -0.1516 23 8 2.3095 -3.5560 -0.1158 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 2.6292 3.7950 -0.9285 32 1 4.1704 2.9045 -0.9287 33 1 3.1478 2.9118 -3.5610 34 1 5.1775 6.4243 -5.5376 35 1 1.2889 -2.5485 2.1527 36 1 -0.1339 -1.8083 1.3782 37 1 -0.6273 -4.0921 2.2793 38 1 -0.8368 -4.0054 0.5131 39 1 1.6168 -5.0672 1.9913 40 1 0.4175 -6.0427 1.1080 41 1 2.4623 -5.6116 -0.2610 42 1 1.0067 -4.8972 -0.9955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268786591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:30 Heat of formation + Delta-G solvation = -71.174906 kcal Electronic energy + Delta-G solvation = -21049.625255 eV Core-core repulsion = 17837.097811 eV Total energy + Delta-G solvation = -3212.527445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65676 -38.78626 -36.24763 -35.08550 -33.97840 -32.62500 -31.55616 -30.08297 -27.18984 -26.60693 -24.80864 -24.11480 -22.36105 -21.07323 -20.74694 -19.53895 -17.52318 -17.49247 -16.90948 -16.13860 -15.89515 -15.30443 -14.89622 -14.76884 -14.41014 -14.27299 -14.13543 -13.66632 -13.27286 -13.11717 -12.85000 -12.77024 -12.58644 -12.19917 -12.04113 -11.83369 -11.58351 -11.43997 -11.17207 -10.89868 -10.83112 -10.78453 -10.48093 -10.10050 -9.88698 -9.63502 -9.54692 -8.84992 -8.76506 -7.18465 -5.72611 -3.07769 2.48973 2.58115 3.40998 3.44986 3.48460 3.62340 4.15012 4.34430 4.37117 4.53081 4.57003 4.63559 4.69075 4.83156 4.97610 5.04027 5.12156 5.17910 5.22720 5.27261 5.35559 5.38939 5.47235 5.55928 5.57813 5.61000 5.62660 5.80828 5.82317 5.93643 6.05046 6.27508 6.41407 6.76882 6.78890 6.82352 7.23547 8.03898 8.09185 8.46716 9.25842 9.98470 10.18712 11.45951 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.003345 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.098445 B = 8369.100667 C = 8669.144189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.614 5.614 3 C 0.120 3.880 4 C -0.144 4.144 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.091 0.909 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.517 3.483 16 O -0.511 6.511 17 C 0.076 3.924 18 H 0.082 0.918 19 C -0.153 4.153 20 C -0.120 4.120 21 C -0.159 4.159 22 C 0.059 3.941 23 O -0.354 6.354 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 -22.835 13.570 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.349 5.349 3 C -0.002 4.002 4 C -0.183 4.183 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.303 3.697 16 O -0.384 6.384 17 C 0.015 3.985 18 H 0.100 0.900 19 C -0.191 4.191 20 C -0.158 4.158 21 C -0.197 4.197 22 C -0.018 4.018 23 O -0.271 6.271 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.117 -22.596 13.608 30.402 hybrid contribution -0.811 -0.716 -1.169 1.593 sum -15.928 -23.312 12.439 30.852 Atomic orbital electron populations 1.21970 0.79750 1.03570 1.01757 1.47799 1.06907 1.06035 1.74186 1.21493 0.97746 0.83153 0.97790 1.22120 1.01002 0.99047 0.96147 1.20518 0.96661 0.91881 0.87663 1.42710 1.69681 1.26228 1.01630 1.19085 1.27752 0.96800 0.93629 0.89168 1.24677 1.00497 0.97219 0.96912 1.69705 1.46198 1.23029 1.19439 0.86524 0.78385 0.80366 0.83171 1.21114 1.21675 1.20334 1.20138 0.88036 0.84603 0.76923 1.90755 1.13576 1.86825 1.47291 1.21878 0.91166 0.86991 0.98482 0.90041 1.22294 1.00164 0.98979 0.97617 1.21584 0.97654 0.93877 1.02669 1.22225 0.98849 0.99158 0.99440 1.22671 0.97796 0.85092 0.96261 1.88096 1.31599 1.13184 1.94263 0.92171 0.90330 0.91215 0.90091 0.89493 0.91589 0.92013 0.95475 0.95337 0.80714 0.93089 0.90371 0.89572 0.90946 0.91524 0.90794 0.90647 0.88310 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.92 59.85 0.53 1.05 16 2 N -0.61 -7.13 2.87 -181.58 -0.52 -7.65 16 3 C 0.12 1.59 5.41 -4.04 -0.02 1.57 16 4 C -0.14 -2.35 5.65 -26.74 -0.15 -2.50 16 5 C 0.16 3.24 6.26 -4.04 -0.03 3.22 16 6 N -0.76 -19.06 5.41 -59.91 -0.32 -19.38 16 7 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 9 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 10 N -0.94 -30.21 13.97 55.49 0.78 -29.43 16 11 Si 0.89 22.90 27.74 -169.99 -4.71 18.18 16 12 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 15 C 0.52 7.23 7.10 -10.99 -0.08 7.15 16 16 O -0.51 -9.69 16.09 -14.30 -0.23 -9.92 16 17 C 0.08 0.80 2.24 -27.84 -0.06 0.74 16 18 H 0.08 0.70 7.13 -51.93 -0.37 0.33 16 19 C -0.15 -1.14 5.12 -26.59 -0.14 -1.27 16 20 C -0.12 -0.68 6.03 -26.55 -0.16 -0.84 16 21 C -0.16 -0.99 6.14 -26.59 -0.16 -1.15 16 22 C 0.06 0.47 6.84 37.21 0.25 0.73 16 23 O -0.35 -4.44 9.95 -55.09 -0.55 -4.99 16 24 H 0.06 0.32 7.06 -51.93 -0.37 -0.05 16 25 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 26 H 0.07 0.39 6.06 -51.93 -0.31 0.07 16 27 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 28 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 29 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.36 8.87 5.53 -40.82 -0.23 8.65 16 34 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.48 5.17 -51.93 -0.27 0.21 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -36.92 332.89 -7.82 -44.74 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.01 Total: 2.10 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.26 Total: 1.34 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.07 Total: -56.46 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.78 Total: -14.91 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.71 Total: 18.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.92 -7.82 -44.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268786591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.432 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds